Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.23305 Avicennia marina HOM05D004165 ORTHO05D005063 0.0e+00 6345.0 3197 100.0
Migut.H02450 Erythranthe guttata HOM05D004165 ORTHO05D005063 0.0e+00 4643.2 3231 74.7
SalBow6G1439 Salvia bowleyana HOM05D004165 ORTHO05D005063 0.0e+00 4487.2 3251 72.2
SGA_v2.0_scaffold2G01283 Striga asiatica HOM05D004165 ORTHO05D005063 0.0e+00 3987.2 2969 70.1
Dinv21242 Davidia involucrata HOM05D004165 ORTHO05D005063 0.0e+00 3867.4 3287 62.3
CSS0013219 Camellia sinensis var. sinensis HOM05D004165 ORTHO05D005063 0.0e+00 3661.3 3274 60.5
Cc07_g16560 Coffea canephora HOM05D004165 ORTHO05D005063 0.0e+00 3647.4 3293 60.0
Lj4C863G6 Lonicera japonica HOM05D004165 ORTHO05D005063 0.0e+00 3581.6 3219 60.1
Cfa002775 Carpinus fangiana HOM05D004165 ORTHO05D005063 0.0e+00 3517.6 3238 59.5
Oeu054941.1 Olea europaea HOM05D004165 ORTHO05D005063 0.0e+00 3499.9 3072 61.4
CiPaw.03G132500 Carya illinoinensis HOM05D004165 ORTHO05D005063 0.0e+00 3494.9 3266 58.4
TAR628G1404 Trochodendron aralioides HOM05D004165 ORTHO05D005063 0.0e+00 3487.6 3288 58.5
Atru.chr4.460 Acer truncatum HOM05D004165 ORTHO05D005063 0.0e+00 3465.6 3277 58.3
Prupe.6G168600 Prunus persica HOM05D004165 ORTHO05D005063 0.0e+00 3461.4 3252 58.3
Sopen04g022920 Solanum pennellii HOM05D004165 ORTHO05D005063 0.0e+00 3456.4 3254 58.1
Thecc.01G115900 Theobroma cacao HOM05D004165 ORTHO05D005063 0.0e+00 3452.9 3243 58.5
vmacro12886 Vaccinium macrocarpon HOM05D004165 ORTHO05D005063 0.0e+00 3419.8 3378 56.2
FAN26G2965 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3409.0 3251 57.4
FvH4_1g23050 Fragaria vesca HOM05D004165 ORTHO05D005063 0.0e+00 3408.2 3251 57.4
FAN23G0468 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3403.2 3251 57.4
Potri.005G086100 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 3402.1 3271 57.3
RcHm_v2.0_Chr2g0117761 Rosa chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3401.3 3257 57.7
Potri.007G078650 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 3397.4 3263 57.5
FAN19G2841 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3392.1 3251 57.1
Actinidia28449 Actinidia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3388.6 3233 57.4
Gohir.D12G093100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 3386.3 3238 57.6
FAN28G2110 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3384.3 3253 57.1
Gohir.A12G083100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 3382.8 3242 57.6
Gorai.008G100800 Gossypium raimondii HOM05D004165 ORTHO05D005063 0.0e+00 3377.0 3251 57.4
Nn5g28841 Nelumbo nucifera HOM05D004165 ORTHO05D005063 0.0e+00 3373.2 3291 57.0
Manes.12G144600 Manihot esculenta HOM05D004165 ORTHO05D005063 0.0e+00 3368.9 3263 57.2
Sabra05G0071000 Salix brachista HOM05D004165 ORTHO05D005063 0.0e+00 3362.4 3309 56.3
MD15G1330600 Malus domestica HOM05D004165 ORTHO05D005063 0.0e+00 3345.1 3265 56.8
CANSAT01G1143 Cannabis sativa HOM05D004165 ORTHO05D005063 0.0e+00 3321.2 3255 56.8
arahy.Tifrunner.gnm1.ann1.F6TX6D Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 3262.6 3264 55.6
arahy.Tifrunner.gnm1.ann1.KAY7L7 Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 3261.9 3272 55.5
Lalb_Chr13g0296271 Lupinus albus HOM05D004165 ORTHO05D005063 0.0e+00 3246.4 3255 55.4
Ca_17683_v3 Cicer arietinum L. HOM05D004165 ORTHO05D005063 0.0e+00 3241.4 3270 55.2
Lj4g0014922 Lotus japonicus HOM05D004165 ORTHO05D005063 0.0e+00 3234.5 3254 55.3
Glyma.08G143200 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 3233.4 3283 55.2
Phvul.002G266300 Phaseolus vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 3229.1 3259 55.6
HanXRQChr08g0218061 Helianthus annuus HOM05D004165 ORTHO05D005063 0.0e+00 3220.3 3216 55.3
PGR004G2408 Punica granatum HOM05D004165 ORTHO05D005063 0.0e+00 3218.7 3271 55.5
Aqoxy5G02023 Aquilegia oxysepala HOM05D004165 ORTHO05D005063 0.0e+00 3202.9 3284 54.5
PSO210G1143 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 3189.1 3281 54.1
ECA233G2130 Erigeron canadensis HOM05D004165 ORTHO05D005063 0.0e+00 3179.0 3100 55.4
CsaV3_6G042210 Cucumis sativus L. HOM05D004165 ORTHO05D005063 0.0e+00 3169.8 3266 53.8
Solyc04g051570.4 Solanum lycopersicum HOM05D004165 ORTHO05D005063 0.0e+00 3169.8 2697 62.3
Medtr8g092100 Medicago truncatula HOM05D004165 ORTHO05D005063 0.0e+00 3163.6 3264 54.5
Duzib147G0774 Durio zibethinus HOM05D004165 ORTHO05D005063 0.0e+00 3162.5 3236 55.2
PSO170G0015 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 3159.8 3282 53.7
MELO3C007461.2 Cucumis melo HOM05D004165 ORTHO05D005063 0.0e+00 3140.9 3256 53.4
TPR.G2248 Trifolium pratense HOM05D004165 ORTHO05D005063 0.0e+00 3128.6 3260 54.0
Sed0015867 Sechium edule HOM05D004165 ORTHO05D005063 0.0e+00 3126.7 3251 53.2
Sc03g0004750 Simmondsia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3114.7 3249 53.9
Glyma.05G185300 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 3093.1 2909 58.4
AT4G39420 Arabidopsis thaliana HOM05D004165 ORTHO05D005063 0.0e+00 3086.6 3254 53.4
ClCG01G015940 Citrullus lanatus HOM05D004165 ORTHO05D005063 0.0e+00 3083.9 3270 52.6
THA.LOC104804480 Tarenaya hassleriana HOM05D004165 ORTHO05D005063 0.0e+00 3082.7 3259 53.7
C01p00530 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 3082.4 3229 53.6
CARHR247290 Cardamine hirsuta HOM05D004165 ORTHO05D005063 0.0e+00 3082.0 3250 53.5
BolC1t00056H Brassica oleracea HOM05D004165 ORTHO05D005063 0.0e+00 3079.3 3229 53.5
Thhalv10024179m.g Eutrema salsugineum HOM05D004165 ORTHO05D005063 0.0e+00 3074.6 3258 53.4
A01p00380 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 3069.3 3226 53.4
BraA01t00046Z Brassica rapa HOM05D004165 ORTHO05D005063 0.0e+00 3067.3 3228 53.4
AL7G11450 Arabidopsis lyrata HOM05D004165 ORTHO05D005063 0.0e+00 3065.0 3247 53.6
Lsat_1_v5_gn_9_57180 Lactuca sativa HOM05D004165 ORTHO05D005063 0.0e+00 3060.0 3210 53.7
Carub.0007s0134 Capsella rubella HOM05D004165 ORTHO05D005063 0.0e+00 3050.0 3245 53.5
Aa31LG6G15850 Aethionema arabicum HOM05D004165 ORTHO05D005063 0.0e+00 3011.1 3309 51.9
EL10Ac6g15255 Beta vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 3004.2 3258 51.6
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 0.0e+00 2998.8 3294 51.7
DCAR_016674 Daucus carota HOM05D004165 ORTHO05D005063 0.0e+00 2981.8 2437 64.0
Sp7g36440 Schrenkiella parvula HOM05D004165 ORTHO05D005063 0.0e+00 2981.4 3252 52.6
Psat7g050200 Pisum sativum HOM05D004165 ORTHO05D005063 0.0e+00 2825.8 3030 52.9
Nitab4.5_0000184g0120 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 2799.2 3101 51.6
unitig_899.g14615 Utricularia gibba HOM05D004165 ORTHO05D005063 0.0e+00 2753.8 2569 59.5
Ciclev10024679m.g Citrus clementina HOM05D004165 ORTHO05D005063 0.0e+00 2640.1 3258 48.0
QL06p031619 Quercus lobata HOM05D004165 ORTHO05D005063 0.0e+00 2587.4 2031 67.4
Zm00001eb062420 Zea mays HOM05D004165 ORTHO05D005063 0.0e+00 2506.1 3275 45.2
CDE07G1357 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 0.0e+00 2400.9 2456 53.3
GSVIVG01022255001 Vitis vinifera HOM05D004165 ORTHO05D005063 0.0e+00 2210.6 1603 72.0
HPP92_013330 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 2102.0 1995 57.5
Eucgr.I00310 Eucalyptus grandis HOM05D004165 ORTHO05D005063 0.0e+00 2089.7 1702 64.1
Mapoly0066s0021 Marchantia polymorpha HOM05D004165 ORTHO05D005063 0.0e+00 2030.0 3029 42.0
Nitab4.5_0009050g0020 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 1999.2 1506 70.3
Peaxi162Scf00702g00610 Petunia axillaris HOM05D004165 ORTHO05D005063 0.0e+00 1957.6 1467 70.6
Hma1.2p1_0134F.1_g061540 Hydrangea macrophylla HOM05D004165 ORTHO05D005063 0.0e+00 1909.4 1801 58.6
AUR62003622 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1867.0 2395 45.6
Pp3c3_30110 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1863.2 3331 38.4
Rhsim10G0147800 Rhododendron simsii HOM05D004165 ORTHO05D005063 0.0e+00 1860.9 1446 69.0
SEGI_01323 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 0.0e+00 1843.6 2816 41.8
Pp3c10_13600 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1833.5 3316 37.7
AUR62017931 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1815.8 2439 44.4
Pp3c7_14700 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1724.9 3522 35.0
Nitab4.5_0009050g0010 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 1510.7 1728 48.7
Haze_25067 Corylus avellana HOM05D004165 ORTHO05D005063 0.0e+00 1481.8 1007 76.5
HPP92_013326 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1423.7 2152 41.4
SMO116G0345 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 0.0e+00 1239.2 1552 47.7
VMungo0251G1264 Vigna mungo HOM05D004165 ORTHO05D005063 0.0e+00 1236.1 1287 52.4
HPP92_013327 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1202.2 1006 64.5
AUR62017932 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1147.9 840 69.9
Haze_25068 Corylus avellana HOM05D004165 ORTHO05D005063 0.0e+00 1142.5 978 61.5
AUR62003623 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1088.9 834 67.7
MBI01_g36155_MAGBIO Magnolia biondii HOM05D004165 ORTHO05D005063 1.8e-303 1047.7 1536 42.1
SEGI_35182 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 2.1e-296 1024.2 977 58.4
SEGI_21320 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 2.7e-296 1023.8 854 63.3
TPR.G2291 Trifolium pratense HOM05D004165 ORTHO05D005063 3.4e-286 990.3 1138 52.4
CBR_g5608 Chara braunii HOM05D004165 ORTHO05D005063 2.4e-284 984.2 3351 27.2
Peaxi162Scf00702g00617 Petunia axillaris HOM05D004165 ORTHO05D005063 1.8e-271 941.4 1278 44.7
QL06p031599 Quercus lobata HOM05D004165 ORTHO05D005063 1.1e-260 905.6 1487 39.7
TPR.G2323 Trifolium pratense HOM05D004165 ORTHO05D005063 3.2e-236 824.3 1491 37.5
COL.COLO4_22364 Corchorus olitorius HOM05D004165 ORTHO05D005063 2.5e-233 814.7 894 50.2
GSVIVG01022256001 Vitis vinifera HOM05D004165 ORTHO05D005063 2.8e-232 811.2 750 57.5
Cpa.g.sc72.8 Carica papaya HOM05D004165 ORTHO05D005063 3.0e-202 711.4 413 87.7
PGSC0003DMG402020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 3.4e-198 698.0 442 79.6
Peaxi162Scf00702g00611 Petunia axillaris HOM05D004165 ORTHO05D005063 4.0e-154 551.6 452 61.1
AagrBONN_evm.TU.Sc2ySwM_344.5499 Anthoceros agrestis HOM05D004165 ORTHO05D005063 3.7e-144 518.5 633 46.8
GSVIVG01022257001 Vitis vinifera HOM05D004165 ORTHO05D005063 1.6e-134 486.5 833 38.1
CAN.G1044.9 Capsicum annuum HOM05D004165 ORTHO05D005063 1.0e-133 483.8 793 38.7
COL.COLO4_22365 Corchorus olitorius HOM05D004165 ORTHO05D005063 3.3e-132 478.8 786 37.9
Dinv05635 Davidia involucrata HOM05D004165 ORTHO05D005063 1.6e-131 476.5 809 38.3
Haze_25071 Corylus avellana HOM05D004165 ORTHO05D005063 2.4e-130 472.6 798 38.3
Os01g0182900 Oryza sativa ssp. japonica HOM05D004165 ORTHO05D005063 3.0e-125 455.7 328 70.4
Oeu054940.1 Olea europaea HOM05D004165 ORTHO05D005063 4.3e-124 451.8 637 42.5
COL.COLO4_22363 Corchorus olitorius HOM05D004165 ORTHO05D005063 7.1e-119 434.5 250 84.4
VMungo0251G0498 Vigna mungo HOM05D004165 ORTHO05D005063 7.1e-119 434.5 911 35.3
CAN.G1044.6 Capsicum annuum HOM05D004165 ORTHO05D005063 1.5e-116 426.8 270 78.1
DCAR_016673 Daucus carota HOM05D004165 ORTHO05D005063 7.6e-113 414.5 785 34.6
CAN.G1044.7 Capsicum annuum HOM05D004165 ORTHO05D005063 3.5e-110 405.6 412 51.2
Haze_25069 Corylus avellana HOM05D004165 ORTHO05D005063 3.8e-104 385.6 412 51.7
Cpa.g.sc72.12 Carica papaya HOM05D004165 ORTHO05D005063 3.5e-102 379.0 532 44.9
Psat4g052480 Pisum sativum HOM05D004165 ORTHO05D005063 1.5e-100 373.6 567 43.6
Cpa.g.sc72.10 Carica papaya HOM05D004165 ORTHO05D005063 1.5e-97 363.6 302 63.6
Psat4g052520 Pisum sativum HOM05D004165 ORTHO05D005063 1.4e-90 340.5 349 57.6
Psat0s5282g0080 Pisum sativum HOM05D004165 ORTHO05D005063 5.3e-90 338.6 218 81.2
SHI11797 Sapria himalayana HOM05D004165 ORTHO05D005063 1.0e-88 334.3 244 66.4
CDE07G1151 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 1.7e-83 317.0 809 30.3
SHI11786 Sapria himalayana HOM05D004165 ORTHO05D005063 3.2e-79 302.8 564 35.5
Cpa.g.sc72.14 Carica papaya HOM05D004165 ORTHO05D005063 6.1e-78 298.5 251 58.6
SHI11781 Sapria himalayana HOM05D004165 ORTHO05D005063 9.7e-76 291.2 863 28.6
SEGI_28584 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 1.3e-75 290.8 311 53.7
SHI11792 Sapria himalayana HOM05D004165 ORTHO05D005063 6.5e-72 278.5 324 48.8
Cpa.g.sc72.15 Carica papaya HOM05D004165 ORTHO05D005063 2.5e-71 276.6 352 44.9
SHI11791 Sapria himalayana HOM05D004165 ORTHO05D005063 1.9e-63 250.4 296 51.0
TAR629G2775 Trochodendron aralioides HOM05D004165 ORTHO05D005063 3.7e-59 236.1 763 27.0
Os01g0182832 Oryza sativa ssp. japonica HOM05D004165 ORTHO05D005063 3.7e-51 209.5 673 27.6
SEGI_28346 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 2.4e-50 206.8 954 25.5
SHI11785 Sapria himalayana HOM05D004165 ORTHO05D005063 1.0e-48 201.4 236 44.9
SMO116G0288 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 2.5e-47 196.8 399 33.3
Cpa.g.sc72.11 Carica papaya HOM05D004165 ORTHO05D005063 2.3e-45 190.3 156 65.4
AagrBONN_evm.TU.Sc2ySwM_344.5500 Anthoceros agrestis HOM05D004165 ORTHO05D005063 7.8e-41 175.3 711 25.5
SHI11788 Sapria himalayana HOM05D004165 ORTHO05D005063 5.0e-40 172.6 197 50.3
SHI11794 Sapria himalayana HOM05D004165 ORTHO05D005063 2.3e-32 147.1 119 65.5
PGSC0003DMG401020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 8.9e-29 135.2 111 56.8
Dinv05989 Davidia involucrata HOM05D004165 ORTHO05D005063 4.9e-27 129.4 83 77.1
Psat5g190880 Pisum sativum HOM05D004165 ORTHO05D326560 5.4e-26 125.9 97 66.0
arahy.Tifrunner.gnm1.ann1.SA1CMP Arachis hypogaea HOM05D004165 ORTHO05D023735 2.7e-25 123.6 162 46.9
Dinv05988 Davidia involucrata HOM05D004165 ORTHO05D005063 1.1e-21 111.7 86 64.0
SHI11789 Sapria himalayana HOM05D004165 ORTHO05D005063 1.4e-21 111.3 118 55.9
PGSC0003DMG400026832 Solanum tuberosum HOM05D004165 ORTHO05D005063 1.4e-21 111.3 93 55.9
Psat5g077040 Pisum sativum HOM05D004628 ORTHO05D005166 2.2e-19 104.0 126 52.4
Psat0ss6263g0080 Pisum sativum HOM05D004165 ORTHO05D005166 4.9e-19 102.8 117 53.0
Psat0ss6263g0240 Pisum sativum HOM05D004165 ORTHO05D005166 1.1e-18 101.7 103 57.3
TPR.G35587 Trifolium pratense HOM05D004165 ORTHO05D005063 1.4e-18 101.3 70 74.3
Sabra16G0108800 Salix brachista HOM05D000241 ORTHO05D001001 3.5e-09 70.1 65 53.8
SHI11793 Sapria himalayana HOM05D004165 ORTHO05D005063 4.6e-09 69.7 45 75.6
Lsat_1_v5_gn_1_66781 Lactuca sativa HOM05D000921 ORTHO05D002852 1.3e-06 61.6 136 30.9
Cpa.g.c46795 Carica papaya HOM05D004165 ORTHO05D005063 2.8e-06 60.5 47 63.8
Lsat_1_v5_gn_3_81660 Lactuca sativa HOM05D000921 ORTHO05D002852 4.8e-06 59.7 58 51.7


User provided reference genes

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