Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.2322 Avicennia marina HOM05D003853 ORTHO05D004171 7.6e-80 300.4 151 100.0
SGA_v2.0_scaffold287G47154 Striga asiatica HOM05D003853 ORTHO05D004171 1.3e-26 123.6 122 57.4
Migut.E00060 Erythranthe guttata HOM05D003853 ORTHO05D004171 2.0e-24 116.3 135 50.4
Oeu048150.1 Olea europaea HOM05D003853 ORTHO05D004171 1.3e-23 113.6 102 55.9
MSTRG.7763 Avicennia marina HOM05D003853 ORTHO05D004171 8.5e-23 110.9 101 56.4
SGA_v2.0_scaffold16G07759 Striga asiatica HOM05D003853 ORTHO05D004171 1.1e-22 110.5 105 52.4
MSTRG.735 Avicennia marina HOM05D003853 ORTHO05D004171 2.6e-19 99.4 102 54.9
BcaC03g17214 Brassica carinata HOM05D003853 ORTHO05D004171 4.8e-18 95.1 100 47.0
BolC2t11232H Brassica oleracea HOM05D003853 ORTHO05D004171 4.8e-18 95.1 100 47.0
C02p51440 Brassica napus HOM05D003853 ORTHO05D004171 6.3e-18 94.7 95 48.4
BcaB07g30301 Brassica carinata HOM05D003853 ORTHO05D004171 1.1e-17 94.0 128 43.8
AT2G03440 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 1.4e-17 93.6 71 59.2
SGA_v2.0_scaffold36G14434 Striga asiatica HOM05D003853 ORTHO05D004171 1.4e-17 93.6 103 47.6
Thhalv10004968m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 1.8e-17 93.2 92 48.9
Aa31LG2G7160 Aethionema arabicum HOM05D006961 ORTHO05D008809 3.1e-17 92.4 119 41.2
A02p33450 Brassica napus HOM05D003853 ORTHO05D004171 3.1e-17 92.4 95 47.4
BcaC06g31183 Brassica carinata HOM05D003853 ORTHO05D004171 5.3e-17 91.7 111 44.1
Cfa008902 Carpinus fangiana HOM05D003853 ORTHO05D004171 7.0e-17 91.3 90 51.1
Nitab4.5_0002806g0050 Nicotiana tabacum HOM05D003853 ORTHO05D004171 7.0e-17 91.3 94 51.1
Solyc04g005480.1 Solanum lycopersicum HOM05D003853 ORTHO05D004171 7.0e-17 91.3 93 48.4
Sopen04g001500 Solanum pennellii HOM05D003853 ORTHO05D004171 7.0e-17 91.3 93 48.4
ClCG05G023860 Citrullus lanatus HOM05D003853 ORTHO05D004171 9.1e-17 90.9 86 54.7
A06p43140 Brassica napus HOM05D003853 ORTHO05D004171 1.2e-16 90.5 107 43.9
Nn4g23335 Nelumbo nucifera HOM05D003853 ORTHO05D004171 1.6e-16 90.1 79 55.7
Phvul.002G168000 Phaseolus vulgaris HOM05D003853 ORTHO05D004171 1.6e-16 90.1 92 51.1
COL.COLO4_27925 Corchorus olitorius HOM05D003853 ORTHO05D004171 2.0e-16 89.7 87 51.7
Hma1.2p1_0354F.1_g133590 Hydrangea macrophylla HOM05D003853 ORTHO05D004171 2.6e-16 89.4 99 47.5
Carub.0005s0241 Capsella rubella HOM05D003853 ORTHO05D004171 3.5e-16 89.0 70 57.1
Haze_11978 Corylus avellana HOM05D003853 ORTHO05D004171 3.5e-16 89.0 90 50.0
Sp2g14360 Schrenkiella parvula HOM05D003853 ORTHO05D004171 3.5e-16 89.0 119 39.5
Aa31LG4G16180 Aethionema arabicum HOM05D003853 ORTHO05D004171 4.5e-16 88.6 95 47.4
Lj6P782T102 Lonicera japonica HOM05D003853 ORTHO05D004171 4.5e-16 88.6 112 46.4
AL5G13190 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 5.9e-16 88.2 97 48.5
BraA02t08366Z Brassica rapa HOM05D003853 ORTHO05D004171 5.9e-16 88.2 100 43.0
Migut.L01216 Erythranthe guttata HOM05D003853 ORTHO05D004171 5.9e-16 88.2 98 48.0
BcaC06g33998 Brassica carinata HOM05D003853 ORTHO05D004171 7.7e-16 87.8 107 43.0
C07p33870 Brassica napus HOM05D003853 ORTHO05D004171 7.7e-16 87.8 107 43.0
BolC7t43901H Brassica oleracea HOM05D003853 ORTHO05D004171 7.7e-16 87.8 107 43.0
BraA06t27202Z Brassica rapa HOM05D003853 ORTHO05D004171 7.7e-16 87.8 107 43.0
CARHR145780 Cardamine hirsuta HOM05D003853 ORTHO05D004171 7.7e-16 87.8 123 41.5
BcaB03g13120 Brassica carinata HOM05D003853 ORTHO05D004171 1.0e-15 87.4 91 47.3
BcaB03g13123 Brassica carinata HOM05D003853 ORTHO05D004171 1.0e-15 87.4 91 47.3
Nitab4.5_0000014g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 1.0e-15 87.4 120 46.7
unitig_699.g19910 Utricularia gibba HOM05D003853 ORTHO05D004171 1.0e-15 87.4 101 41.6
Glyma.07G226567 Glycine max HOM05D003853 ORTHO05D004171 1.7e-15 86.7 98 48.0
Glyma.07G226633 Glycine max HOM05D003853 ORTHO05D004171 1.7e-15 86.7 98 48.0
CARHR014300 Cardamine hirsuta HOM05D003853 ORTHO05D004171 2.2e-15 86.3 91 48.4
MELO3C012136.2 Cucumis melo HOM05D003853 ORTHO05D004171 2.2e-15 86.3 103 47.6
PGSC0003DMG400035643 Solanum tuberosum HOM05D003853 ORTHO05D004171 2.2e-15 86.3 122 41.8
BolC8t49263H Brassica oleracea HOM05D003853 ORTHO05D004171 2.9e-15 85.9 93 46.2
HanXRQChr10g0308121 Helianthus annuus HOM05D003853 ORTHO05D004171 2.9e-15 85.9 103 43.7
Thecc.02G335500 Theobroma cacao HOM05D003853 ORTHO05D004171 3.8e-15 85.5 126 40.5
TAR622G0811 Trochodendron aralioides HOM05D003853 ORTHO05D004171 3.8e-15 85.5 105 45.7
VMungo0251G2653 Vigna mungo HOM05D003853 ORTHO05D004171 3.8e-15 85.5 92 51.1
BolC8t49264H Brassica oleracea HOM05D003853 ORTHO05D004171 5.0e-15 85.1 95 46.3
Dinv16707 Davidia involucrata HOM05D003853 ORTHO05D004171 5.0e-15 85.1 85 49.4
Glyma.20G027200 Glycine max HOM05D003853 ORTHO05D004171 5.0e-15 85.1 84 51.2
BcaC07g38709 Brassica carinata HOM05D003853 ORTHO05D004171 6.5e-15 84.7 93 45.2
C08p16390 Brassica napus HOM05D003853 ORTHO05D004171 6.5e-15 84.7 93 45.2
BraA08t35142Z Brassica rapa HOM05D003853 ORTHO05D004171 6.5e-15 84.7 90 46.7
Thhalv10008975m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 6.5e-15 84.7 107 40.2
Duzib251G0928 Durio zibethinus HOM05D003853 ORTHO05D004171 8.5e-15 84.3 83 48.2
Sp1g12030 Schrenkiella parvula HOM05D003853 ORTHO05D004171 8.5e-15 84.3 137 40.9
Sed0005785 Sechium edule HOM05D003853 ORTHO05D004171 8.5e-15 84.3 132 43.2
AT1G13930 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 1.1e-14 84.0 93 46.2
CsaV3_5G033160 Cucumis sativus L. HOM05D003853 ORTHO05D004171 1.1e-14 84.0 103 46.6
Gorai.005G143900 Gossypium raimondii HOM05D003853 ORTHO05D004171 1.1e-14 84.0 102 45.1
C08p16400 Brassica napus HOM05D003853 ORTHO05D004171 1.5e-14 83.6 95 45.3
TWI75G0276 Tripterygium wilfordii HOM05D003853 ORTHO05D004171 1.5e-14 83.6 91 46.2
Manes.01G030100 Manihot esculenta HOM05D003853 ORTHO05D004171 1.9e-14 83.2 85 48.2
BcaC07g38710 Brassica carinata HOM05D003853 ORTHO05D004171 2.5e-14 82.8 92 45.7
Gohir.D02G128200 Gossypium hirsutum HOM05D003853 ORTHO05D004171 3.2e-14 82.4 102 44.1
AL1G25770 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 4.2e-14 82.0 93 45.2
Peaxi162Scf00930g00051 Petunia axillaris HOM05D003853 ORTHO05D004171 4.2e-14 82.0 66 60.6
A08p32180 Brassica napus HOM05D003853 ORTHO05D004171 5.5e-14 81.6 66 56.1
CiPaw.05G127700 Carya illinoinensis HOM05D003853 ORTHO05D004171 5.5e-14 81.6 84 51.2
SalBow2G1698 Salvia bowleyana HOM05D003853 ORTHO05D004171 5.5e-14 81.6 98 41.8
SalBow2G1975 Salvia bowleyana HOM05D003853 ORTHO05D004171 5.5e-14 81.6 98 41.8
Carub.0001s1363 Capsella rubella HOM05D003853 ORTHO05D004171 7.2e-14 81.3 91 46.2
Gohir.A03G103000 Gossypium hirsutum HOM05D003853 ORTHO05D004171 7.2e-14 81.3 94 45.7
Ah.03g139160 Amaranthus hybridus HOM05D003853 ORTHO05D004171 9.4e-14 80.9 72 55.6
Nitab4.5_0015741g0010 Nicotiana tabacum HOM05D003853 ORTHO05D004171 9.4e-14 80.9 103 43.7
Thecc.02G335600 Theobroma cacao HOM05D003853 ORTHO05D004171 9.4e-14 80.9 116 41.4
Sc04g0007740 Simmondsia chinensis HOM05D003853 ORTHO05D004171 1.2e-13 80.5 129 39.5
Peaxi162Scf00314g00022 Petunia axillaris HOM05D003853 ORTHO05D004171 2.7e-13 79.3 92 43.5
COL.COLO4_27926 Corchorus olitorius HOM05D003853 ORTHO05D004171 3.6e-13 79.0 81 48.1
Lalb_Chr05g0215091 Lupinus albus HOM05D003853 ORTHO05D004171 3.6e-13 79.0 73 50.7
PGSC0003DMG400028384 Solanum tuberosum HOM05D003853 ORTHO05D004171 3.6e-13 79.0 72 54.2
Duzib251G0287 Durio zibethinus HOM05D003853 ORTHO05D004171 4.7e-13 78.6 105 42.9
Ca_04944_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 8.0e-13 77.8 124 41.1
Potri.010G161200 Populus trichocarpa HOM05D003853 ORTHO05D004171 8.0e-13 77.8 77 48.1
Ah.03g139140 Amaranthus hybridus HOM05D003853 ORTHO05D004171 1.0e-12 77.4 87 44.8
Sed0019389 Sechium edule HOM05D003853 ORTHO05D004171 1.0e-12 77.4 107 43.0
Lsat_1_v5_gn_4_11980 Lactuca sativa HOM05D003853 ORTHO05D004171 1.4e-12 77.0 101 35.6
PSO017G6890 Papaver somniferum HOM05D003853 ORTHO05D004171 1.4e-12 77.0 76 48.7
CDE02G1866 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 3.0e-12 75.9 74 50.0
Manes.01G030000 Manihot esculenta HOM05D003853 ORTHO05D004171 3.0e-12 75.9 84 45.2
Lj4g0005239 Lotus japonicus HOM05D003853 ORTHO05D004171 4.0e-12 75.5 124 37.9
CSS0028215 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 5.2e-12 75.1 71 53.5
AUR62003133 Chenopodium quinoa HOM05D003853 ORTHO05D004171 5.2e-12 75.1 73 50.7
PSO478G4998 Papaver somniferum HOM05D003853 ORTHO05D004171 5.2e-12 75.1 76 47.4
Eucgr.B03178 Eucalyptus grandis HOM05D003853 ORTHO05D004171 8.8e-12 74.3 98 40.8
Potri.008G093200 Populus trichocarpa HOM05D003853 ORTHO05D004171 8.8e-12 74.3 91 39.6
PGR102G0417 Punica granatum HOM05D003853 ORTHO05D004171 8.8e-12 74.3 84 50.0
PGR102G3239 Punica granatum HOM05D003853 ORTHO05D004171 8.8e-12 74.3 84 50.0
Sopen05g007410 Solanum pennellii HOM05D003853 ORTHO05D004171 8.8e-12 74.3 66 54.5
Cpa.g.sc1.96 Carica papaya HOM05D003853 ORTHO05D004171 1.2e-11 73.9 84 48.8
Ciclev10033000m.g Citrus clementina HOM05D003853 ORTHO05D004171 1.2e-11 73.9 121 39.7
QL03p071021 Quercus lobata HOM05D003853 ORTHO05D004171 1.2e-11 73.9 110 40.0
CiPaw.05G127600 Carya illinoinensis HOM05D003853 ORTHO05D004171 1.5e-11 73.6 77 48.1
Ca_18813_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 1.5e-11 73.6 71 50.7
MBI16_g00500_MAGBIO Magnolia biondii HOM05D003853 ORTHO05D004171 1.5e-11 73.6 106 39.6
ECA234G0349 Erigeron canadensis HOM05D003853 ORTHO05D004171 2.0e-11 73.2 102 37.3
Medtr5g043660 Medicago truncatula HOM05D003853 ORTHO05D004171 2.0e-11 73.2 125 38.4
Cpa.g.sc1.97 Carica papaya HOM05D003853 ORTHO05D004171 2.6e-11 72.8 80 48.8
ECA246G1290 Erigeron canadensis HOM05D003853 ORTHO05D004171 4.4e-11 72.0 82 40.2
Ah.02g126530 Amaranthus hybridus HOM05D003853 ORTHO05D004171 5.7e-11 71.6 82 45.1
Sopen05g007400 Solanum pennellii HOM05D003853 ORTHO05D004171 5.7e-11 71.6 82 50.0
Psat7g135240 Pisum sativum HOM05D003853 ORTHO05D004171 7.5e-11 71.2 71 49.3
CSS0045101 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 9.7e-11 70.9 71 52.1
AUR62003132 Chenopodium quinoa HOM05D003853 ORTHO05D004171 9.7e-11 70.9 72 51.4
AUR62007952 Chenopodium quinoa HOM05D003853 ORTHO05D004171 9.7e-11 70.9 65 55.4
Lsat_1_v5_gn_3_56161 Lactuca sativa HOM05D003853 ORTHO05D004171 9.7e-11 70.9 75 41.3
Peaxi162Scf00314g00031 Petunia axillaris HOM05D003853 ORTHO05D004171 1.3e-10 70.5 95 42.1
ATR0111G024 Amborella trichopoda HOM05D003853 ORTHO05D004171 1.7e-10 70.1 105 42.9
Rhsim03G0019300 Rhododendron simsii HOM05D003853 ORTHO05D004171 1.7e-10 70.1 103 40.8
TPR.G2267 Trifolium pratense HOM05D003853 ORTHO05D004171 1.7e-10 70.1 86 47.7
BraA08t35141Z Brassica rapa HOM05D003853 ORTHO05D004171 2.2e-10 69.7 95 41.1
HanXRQChr15g0477051 Helianthus annuus HOM05D003853 ORTHO05D004171 2.2e-10 69.7 82 41.5
Sabra08G0070000 Salix brachista HOM05D003853 ORTHO05D004171 2.2e-10 69.7 91 37.4
QL03p071009 Quercus lobata HOM05D003853 ORTHO05D004171 2.8e-10 69.3 102 40.2
QL03p070977 Quercus lobata HOM05D003853 ORTHO05D004171 3.7e-10 68.9 70 50.0
Sc04g0007730 Simmondsia chinensis HOM05D003853 ORTHO05D004171 4.8e-10 68.6 81 44.4
AUR62003131 Chenopodium quinoa HOM05D003853 ORTHO05D004171 6.3e-10 68.2 97 41.2
AUR62007951 Chenopodium quinoa HOM05D003853 ORTHO05D004171 6.3e-10 68.2 104 41.3
Cc11_g12330 Coffea canephora HOM05D003853 ORTHO05D004171 6.3e-10 68.2 95 37.9
Medtr4g082830 Medicago truncatula HOM05D003853 ORTHO05D004171 6.3e-10 68.2 75 48.0
Sabra10G0122600 Salix brachista HOM05D003853 ORTHO05D004171 6.3e-10 68.2 124 34.7
Lalb_Chr17g0341041 Lupinus albus HOM05D003853 ORTHO05D004171 8.2e-10 67.8 92 38.0
Sabra10G0122700 Salix brachista HOM05D003853 ORTHO05D004171 1.1e-09 67.4 130 36.2
Lj2g0020869 Lotus japonicus HOM05D003853 ORTHO05D004171 1.4e-09 67.0 101 39.6
Nitab4.5_0000334g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 1.4e-09 67.0 112 37.5
A08p32170 Brassica napus HOM05D003853 ORTHO05D004171 1.8e-09 66.6 79 43.0
CAN.G1340.8 Capsicum annuum HOM05D003853 ORTHO05D004171 1.8e-09 66.6 105 40.0
Medtr4g082860 Medicago truncatula HOM05D003853 ORTHO05D004171 1.8e-09 66.6 105 41.0
DCAR_027453 Daucus carota HOM05D003853 ORTHO05D004171 3.1e-09 65.9 109 43.1
Psat7g135200 Pisum sativum HOM05D003853 ORTHO05D004171 3.1e-09 65.9 118 39.0
QL03p070993 Quercus lobata HOM05D003853 ORTHO05D004171 3.1e-09 65.9 109 39.4
Actinidia12318 Actinidia chinensis HOM05D003853 ORTHO05D004171 5.3e-09 65.1 104 42.3
CDE02G2907 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 5.3e-09 65.1 73 43.8
Psat2g127960 Pisum sativum HOM05D003853 ORTHO05D004171 5.3e-09 65.1 121 37.2
TPR.G34063 Trifolium pratense HOM05D003853 ORTHO05D004171 5.3e-09 65.1 75 48.0
CANSAT64G1198 Cannabis sativa HOM05D003853 ORTHO05D004171 7.0e-09 64.7 64 48.4
Os10g0330000 Oryza sativa ssp. japonica HOM05D003853 ORTHO05D004171 7.0e-09 64.7 69 49.3
MD13G1065700 Malus domestica HOM05D003853 ORTHO05D004171 9.1e-09 64.3 83 38.6
MD16G1064200 Malus domestica HOM05D003853 ORTHO05D004171 1.2e-08 63.9 91 39.6
HPP92_023639 Vanilla planifolia HOM05D003853 ORTHO05D004171 1.2e-08 63.9 128 34.4
TPR.G34052 Trifolium pratense HOM05D003853 ORTHO05D004171 1.6e-08 63.5 96 39.6
FAN12G3704 Fragaria x ananassa HOM05D002141 ORTHO05D002119 2.7e-08 62.8 99 40.4
SEGI_07999 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 2.7e-08 62.8 76 47.4
SEGI_33923 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 2.7e-08 62.8 80 45.0
vmacro22354 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 2.7e-08 62.8 92 40.2
vmacro22355 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 2.7e-08 62.8 97 39.2
Zm00001eb334140 Zea mays HOM05D003853 ORTHO05D004171 4.5e-08 62.0 83 42.2
FAN17G1589 Fragaria x ananassa HOM05D003853 ORTHO05D004171 7.7e-08 61.2 75 44.0
Prupe.1G282500 Prunus persica HOM05D003853 ORTHO05D004171 7.7e-08 61.2 70 42.9
HPP92_023625 Vanilla planifolia HOM05D003853 ORTHO05D004171 7.7e-08 61.2 128 33.6
Zm00001eb007060 Zea mays HOM05D003853 ORTHO05D004171 1.0e-07 60.8 95 42.1
MD13G1065600 Malus domestica HOM05D003853 ORTHO05D004171 3.8e-07 58.9 70 41.4
Actinidia28167 Actinidia chinensis HOM05D003853 ORTHO05D004171 5.0e-07 58.5 83 45.8
Ah.03g139150 Amaranthus hybridus HOM05D003853 ORTHO05D004171 1.1e-06 57.4 107 43.0
SalBow8G0382 Salvia bowleyana HOM05D033521 ORTHO05D004171 1.1e-06 57.4 64 53.1
Solyc05g012570.3 Solanum lycopersicum HOM05D003853 ORTHO05D004171 1.5e-06 57.0 83 42.2
THA.LOC104805946 Tarenaya hassleriana HOM05D003853 ORTHO05D004171 2.5e-06 56.2 37 62.2
vmacro22463 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 7.2e-06 54.7 84 38.1
TPR.G24450 Trifolium pratense HOM05D003853 ORTHO05D004171 9.4e-06 54.3 112 33.0


User provided reference genes

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