Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.23218 Avicennia marina HOM05D005752 ORTHO05D006959 2.5e-78 295.4 157 100.0
Migut.O00287 Erythranthe guttata HOM05D005752 ORTHO05D006959 6.7e-55 217.6 161 78.3
Oeu038392.3 Olea europaea HOM05D005752 ORTHO05D006959 3.2e-49 198.7 165 71.5
CSS0040154 Camellia sinensis var. sinensis HOM05D005752 ORTHO05D006959 7.9e-48 194.1 164 69.5
Atru.chr9.27 Acer truncatum HOM05D005752 ORTHO05D006959 2.3e-47 192.6 159 71.7
Dinv04371 Davidia involucrata HOM05D005752 ORTHO05D006959 6.7e-47 191.0 160 71.2
GSVIVG01024240001 Vitis vinifera HOM05D005752 ORTHO05D006959 6.7e-47 191.0 170 68.2
Thecc.03G073300 Theobroma cacao HOM05D005752 ORTHO05D006959 3.7e-45 185.3 165 67.9
Aqoxy3G04339 Aquilegia oxysepala HOM05D005752 ORTHO05D006959 4.8e-45 184.9 165 66.7
TAR472G0004 Trochodendron aralioides HOM05D005752 ORTHO05D006959 6.3e-45 184.5 163 68.7
CANSAT80G0630 Cannabis sativa HOM05D005752 ORTHO05D006959 8.2e-45 184.1 161 68.3
TWI81G0144 Tripterygium wilfordii HOM05D005752 ORTHO05D006959 1.1e-44 183.7 190 61.6
Eucgr.H00664 Eucalyptus grandis HOM05D005752 ORTHO05D006959 1.8e-44 183.0 172 65.1
TAR636G2449 Trochodendron aralioides HOM05D005752 ORTHO05D006959 2.4e-44 182.6 163 66.9
ECA232G1540 Erigeron canadensis HOM05D005752 ORTHO05D006959 3.1e-44 182.2 161 67.1
Gohir.A07G062900 Gossypium hirsutum HOM05D005752 ORTHO05D006959 3.1e-44 182.2 169 65.1
CiPaw.15G108100 Carya illinoinensis HOM05D005752 ORTHO05D006959 4.1e-44 181.8 174 66.1
PGR083G1308 Punica granatum HOM05D005752 ORTHO05D006959 6.9e-44 181.0 166 65.7
Duzib205G1872 Durio zibethinus HOM05D005752 ORTHO05D006959 9.1e-44 180.6 165 64.8
Actinidia06837 Actinidia chinensis HOM05D005752 ORTHO05D006959 1.2e-43 180.3 164 67.1
Sed0024837 Sechium edule HOM05D005752 ORTHO05D006959 4.5e-43 178.3 159 70.4
CARHR066400 Cardamine hirsuta HOM05D005752 ORTHO05D006959 5.9e-43 177.9 159 67.3
Manes.15G187700 Manihot esculenta HOM05D005752 ORTHO05D006959 7.7e-43 177.6 167 64.7
CAN.G65.61 Capsicum annuum HOM05D005752 ORTHO05D006959 2.2e-42 176.0 171 60.8
Gohir.D07G067500 Gossypium hirsutum HOM05D005752 ORTHO05D006959 2.2e-42 176.0 165 65.5
Ciclev10024397m.g Citrus clementina HOM05D005752 ORTHO05D006959 3.8e-42 175.3 187 59.4
Gorai.001G071100 Gossypium raimondii HOM05D005752 ORTHO05D006959 5.0e-42 174.9 165 64.8
Eucgr.G00948 Eucalyptus grandis HOM05D005752 ORTHO05D006959 6.5e-42 174.5 176 60.8
ATR0124G026 Amborella trichopoda HOM05D005752 ORTHO05D006959 1.9e-41 172.9 168 63.1
C06p34060 Brassica napus HOM05D005752 ORTHO05D006959 3.2e-41 172.2 171 62.6
Carub.0002s2009 Capsella rubella HOM05D005752 ORTHO05D006959 5.5e-41 171.4 180 60.6
FvH4_5g27080 Fragaria vesca HOM05D005752 ORTHO05D006959 9.4e-41 170.6 169 62.1
Potri.004G066700 Populus trichocarpa HOM05D005752 ORTHO05D006959 1.2e-40 170.2 167 64.7
AT1G73350 Arabidopsis thaliana HOM05D005752 ORTHO05D006959 1.6e-40 169.9 173 60.1
Nitab4.5_0005315g0030 Nicotiana tabacum HOM05D005752 ORTHO05D006959 1.6e-40 169.9 158 62.0
Prupe.1G588300 Prunus persica HOM05D005752 ORTHO05D006959 1.6e-40 169.9 163 63.8
AL2G33120 Arabidopsis lyrata HOM05D005752 ORTHO05D006959 6.1e-40 167.9 180 59.4
DCAR_023237 Daucus carota HOM05D005752 ORTHO05D006959 6.1e-40 167.9 174 58.0
THA.LOC104812187 Tarenaya hassleriana HOM05D005752 ORTHO05D006959 5.2e-39 164.9 179 58.7
BraA07t30622Z Brassica rapa HOM05D005752 ORTHO05D006959 6.7e-39 164.5 183 58.5
PSO782G4127 Papaver somniferum HOM05D005752 ORTHO05D006959 1.5e-38 163.3 163 62.0
Nitab4.5_0008182g0060 Nicotiana tabacum HOM05D005752 ORTHO05D006959 2.6e-38 162.5 163 59.5
PSO063G6484 Papaver somniferum HOM05D005752 ORTHO05D006959 3.3e-38 162.2 163 61.3
EL10Ac8g19469 Beta vulgaris HOM05D005752 ORTHO05D006959 4.4e-38 161.8 183 57.4
BcaB03g15707 Brassica carinata HOM05D005752 ORTHO05D006959 4.4e-38 161.8 174 58.0
Ah.14g085830 Amaranthus hybridus HOM05D005752 ORTHO05D006959 5.7e-38 161.4 175 58.9
Eucgr.J01173 Eucalyptus grandis HOM05D005752 ORTHO05D006959 7.4e-38 161.0 160 61.9
A07p29840 Brassica napus HOM05D005752 ORTHO05D006959 1.3e-37 160.2 193 55.4
Lj2g0008613 Lotus japonicus HOM05D005752 ORTHO05D006959 1.3e-37 160.2 182 58.2
Glyma.09G161000 Glycine max HOM05D005752 ORTHO05D006959 2.2e-37 159.5 116 76.7
Nitab4.5_0009307g0030 Nicotiana tabacum HOM05D005752 ORTHO05D006959 2.8e-37 159.1 167 58.7
Lsat_1_v5_gn_6_23301 Lactuca sativa HOM05D005752 ORTHO05D006959 8.2e-37 157.5 157 60.5
BcaB03g15052 Brassica carinata HOM05D005752 ORTHO05D006959 1.8e-36 156.4 179 55.3
Os02g0637900 Oryza sativa ssp. japonica HOM05D005752 ORTHO05D006959 2.4e-36 156.0 177 57.6
BraA07t31481Z Brassica rapa HOM05D005752 ORTHO05D006959 3.1e-36 155.6 178 57.9
Glyma.16G210400 Glycine max HOM05D005752 ORTHO05D006959 4.1e-36 155.2 100 83.0
Phvul.004G136400 Phaseolus vulgaris HOM05D005752 ORTHO05D006959 4.1e-36 155.2 107 80.4
Sc10g0008680 Simmondsia chinensis HOM05D005752 ORTHO05D006959 7.0e-36 154.5 175 56.6
Sp5g28280 Schrenkiella parvula HOM05D005752 ORTHO05D006959 1.2e-35 153.7 190 54.7
A07p39320 Brassica napus HOM05D005752 ORTHO05D006959 2.0e-35 152.9 181 54.7
Zm00001eb185640 Zea mays HOM05D005752 ORTHO05D006959 1.7e-34 149.8 172 58.1
PGSC0003DMG400026968 Solanum tuberosum HOM05D005752 ORTHO05D006959 8.5e-34 147.5 165 55.8
CAN.G861.19 Capsicum annuum HOM05D005752 ORTHO05D006959 1.5e-33 146.7 205 47.8
Lj5C168T8 Lonicera japonica HOM05D005752 ORTHO05D006959 1.9e-33 146.4 158 60.1
Mapoly0033s0045 Marchantia polymorpha HOM05D005752 ORTHO05D006959 2.5e-33 146.0 161 58.4
Nitab4.5_0000477g0100 Nicotiana tabacum HOM05D005752 ORTHO05D006959 5.5e-33 144.8 158 57.0
SEGI_37918 Sequoiadendron giganteum HOM05D005752 ORTHO05D006959 9.4e-33 144.1 175 53.7
Hund06741 Selenicereus undatus HOM05D005752 ORTHO05D006959 1.2e-32 143.7 169 53.3
CDE08G1652 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 2.7e-32 142.5 175 49.7
VMungo0464G0712 Vigna mungo HOM05D005752 ORTHO05D006959 3.6e-32 142.1 201 49.3
arahy.Tifrunner.gnm1.ann1.CL4QH0 Arachis hypogaea HOM05D005752 ORTHO05D006959 6.1e-32 141.4 155 56.1
Cfa017810 Carpinus fangiana HOM05D005752 ORTHO05D006959 2.3e-31 139.4 170 55.3
arahy.Tifrunner.gnm1.ann1.LY2Y4A Arachis hypogaea HOM05D005752 ORTHO05D006959 3.0e-31 139.0 224 46.9
Pp3c25_5680 Physcomitrium patens HOM05D005752 ORTHO05D006959 5.2e-31 138.3 158 58.2
unitig_0.g1238 Utricularia gibba HOM05D000376 ORTHO05D000237 8.8e-31 137.5 156 55.8
Thhalv10019162m.g Eutrema salsugineum HOM05D005752 ORTHO05D006959 2.0e-30 136.3 178 51.7
Pp3c16_8600 Physcomitrium patens HOM05D005752 ORTHO05D006959 6.3e-29 131.3 161 56.5
PGSC0003DMG400015277 Solanum tuberosum HOM05D005752 ORTHO05D006959 1.1e-28 130.6 169 53.8
ClCG04G012440 Citrullus lanatus HOM05D005752 ORTHO05D006959 8.5e-26 120.9 138 59.4
CBR_g54189 Chara braunii HOM05D005752 ORTHO05D006959 7.2e-25 117.9 108 63.0
Medtr6g068990 Medicago truncatula HOM05D005752 ORTHO05D006959 2.1e-24 116.3 180 46.7
Solyc06g150131.1 Solanum lycopersicum HOM05D005752 ORTHO05D006959 1.4e-23 113.6 171 46.8
SMO232G0035 Selaginella moellendorffii HOM05D005752 ORTHO05D006959 1.8e-23 113.2 159 47.8
Rhsim08G0128600 Rhododendron simsii HOM05D005752 ORTHO05D006959 9.8e-22 107.5 144 53.5
FAN18G3658 Fragaria x ananassa HOM05D005752 ORTHO05D006959 2.4e-20 102.8 59 89.8
Nn4g25057 Nelumbo nucifera HOM05D005752 ORTHO05D006959 2.4e-20 102.8 74 75.7
SalBow5G5648 Salvia bowleyana HOM05D005752 ORTHO05D006959 4.1e-20 102.1 162 45.1
RcHm_v2.0_Chr7g0218081 Rosa chinensis HOM05D005752 ORTHO05D006959 5.4e-20 101.7 59 89.8
CDE04G3451 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 7.0e-20 101.3 52 98.1
AUR62040639 Chenopodium quinoa HOM05D005752 ORTHO05D006959 7.0e-20 101.3 52 98.1
Cc00_g01570 Coffea canephora HOM05D005752 ORTHO05D006959 7.0e-20 101.3 52 98.1
CsaV3_1G005270 Cucumis sativus L. HOM05D005752 ORTHO05D006959 7.0e-20 101.3 52 98.1
FAN08G2690 Fragaria x ananassa HOM05D005752 ORTHO05D006959 7.0e-20 101.3 59 88.1
Sabra04G0044500 Salix brachista HOM05D005752 ORTHO05D006959 7.0e-20 101.3 52 98.1
HPP92_021122 Vanilla planifolia HOM05D005752 ORTHO05D006959 9.1e-20 100.9 63 85.7
Psat1g118960 Pisum sativum HOM05D005752 ORTHO05D006959 1.2e-19 100.5 144 52.1
MELO3C001966.2 Cucumis melo HOM05D005752 ORTHO05D006959 1.6e-19 100.1 141 53.9
HanXRQChr04g0126291 Helianthus annuus HOM05D005752 ORTHO05D006959 1.6e-19 100.1 52 96.2
Lalb_Chr14g0370131 Lupinus albus HOM05D005752 ORTHO05D006959 1.6e-19 100.1 52 96.2
BcaC08g45648 Brassica carinata HOM05D005752 ORTHO05D006959 3.5e-19 99.0 52 94.2
BolC6t38521H Brassica oleracea HOM05D005752 ORTHO05D006959 3.5e-19 99.0 52 94.2
Sopen03g029760 Solanum pennellii HOM05D005752 ORTHO05D006959 1.3e-18 97.1 52 92.3
QL10p031508 Quercus lobata HOM05D005752 ORTHO05D006959 2.9e-18 95.9 154 47.4
SGA_v2.0_scaffold25G10718 Striga asiatica HOM05D005752 ORTHO05D006959 1.1e-17 94.0 110 52.7
Aa31LG4G3620 Aethionema arabicum HOM05D005752 ORTHO05D006959 3.3e-17 92.4 178 40.4
QL12p037498 Quercus lobata HOM05D005752 ORTHO05D006959 2.8e-16 89.4 117 48.7
C06p47550 Brassica napus HOM05D005752 ORTHO05D006959 4.7e-16 88.6 81 61.7
BolC6t39793H Brassica oleracea HOM05D005752 ORTHO05D006959 4.7e-16 88.6 81 61.7
QL10p035764 Quercus lobata HOM05D005752 ORTHO05D006959 6.1e-16 88.2 117 48.7
Cpa.g.sc628.6 Carica papaya HOM05D005752 ORTHO05D006959 2.3e-15 86.3 134 47.8
MBI03_g11902_MAGBIO Magnolia biondii HOM05D005752 ORTHO05D006959 1.2e-14 84.0 110 49.1
BcaC08g45649 Brassica carinata HOM05D005752 ORTHO05D006959 1.7e-13 80.1 114 49.1
FAN13G1309 Fragaria x ananassa HOM05D005752 ORTHO05D006959 3.1e-12 75.9 114 44.7
Sopen06g028430 Solanum pennellii HOM05D005752 ORTHO05D006959 5.9e-11 71.6 113 43.4
HanXRQChr04g0126301 Helianthus annuus HOM05D005752 ORTHO05D006959 1.7e-10 70.1 54 68.5
Ca_25284_v3 Cicer arietinum L. HOM05D005752 ORTHO05D006959 5.0e-10 68.6 134 41.8
SHI05872 Sapria himalayana HOM05D005752 ORTHO05D006959 6.6e-10 68.2 104 47.1
AUR62041602 Chenopodium quinoa HOM05D005752 ORTHO05D006959 1.1e-09 67.4 36 97.2
vmacro17761 Vaccinium macrocarpon HOM05D005752 ORTHO05D006959 1.9e-09 66.6 36 94.4
CDE04G3305 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 1.2e-08 63.9 51 56.9
vmacro17785 Vaccinium macrocarpon HOM05D005752 ORTHO05D006959 3.6e-08 62.4 42 78.6
vmacro17760 Vaccinium macrocarpon HOM05D005752 ORTHO05D006959 6.1e-08 61.6 84 47.6
COL.COLO4_38544 Corchorus olitorius HOM05D005752 ORTHO05D006959 1.4e-07 60.5 36 88.9
Lalb_Chr14g0370141 Lupinus albus HOM05D005752 ORTHO05D006959 1.4e-07 60.5 56 55.4
AagrBONN_evm.TU.Sc2ySwM_368.1654 Anthoceros agrestis HOM05D005752 ORTHO05D006959 4.0e-07 58.9 145 36.6
PGSC0003DMG400035697 Solanum tuberosum HOM05D005752 ORTHO05D006959 4.0e-07 58.9 35 85.7
Cc00_g01560 Coffea canephora HOM05D005752 ORTHO05D006959 2.6e-06 56.2 87 47.1
Peaxi162Scf00171g00037 Petunia axillaris HOM05D005752 ORTHO05D006959 2.6e-06 56.2 84 42.9


User provided reference genes

Program Settings