Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.23144 Avicennia marina HOM05D005107 ORTHO05D006200 2.5e-195 685.3 343 100.0
Migut.O00123 Erythranthe guttata HOM05D005107 ORTHO05D006200 2.6e-136 489.2 344 72.4
SalBow5G2679 Salvia bowleyana HOM05D005107 ORTHO05D006200 1.6e-125 453.4 345 67.5
SalBow6G4644 Salvia bowleyana HOM05D005107 ORTHO05D006200 2.4e-113 412.9 343 62.1
Oeu016417.1 Olea europaea HOM05D005107 ORTHO05D006200 8.7e-108 394.4 328 59.5
Migut.D01962 Erythranthe guttata HOM05D005107 ORTHO05D006200 5.7e-107 391.7 343 60.9
Dinv20630 Davidia involucrata HOM05D005107 ORTHO05D006200 3.8e-103 379.0 344 57.0
Sopen03g031750 Solanum pennellii HOM05D005107 ORTHO05D006200 3.6e-101 372.5 344 58.1
PGSC0003DMG401018164 Solanum tuberosum HOM05D005107 ORTHO05D006200 6.1e-101 371.7 344 57.8
CAN.G1166.21 Capsicum annuum HOM05D005107 ORTHO05D006200 3.0e-100 369.4 344 57.8
CSS0000196 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 5.1e-100 368.6 343 55.4
GSVIVG01007704001 Vitis vinifera HOM05D005107 ORTHO05D006200 9.7e-99 364.4 345 54.8
Solyc03g112670.3 Solanum lycopersicum HOM05D005107 ORTHO05D006200 1.1e-97 360.9 343 56.6
Hma1.2p1_0592F.1_g185565 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 3.1e-97 359.4 344 55.2
Nitab4.5_0001207g0070 Nicotiana tabacum HOM05D005107 ORTHO05D006200 2.6e-96 356.3 334 55.7
Hma1.2p1_0046F.1_g026720 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 2.5e-94 349.7 343 53.4
Nitab4.5_0003229g0090 Nicotiana tabacum HOM05D005107 ORTHO05D006200 1.2e-93 347.4 324 55.2
MD14G1176600 Malus domestica HOM05D005107 ORTHO05D006200 2.1e-93 346.7 345 52.8
Peaxi162Scf00089g01740 Petunia axillaris HOM05D005107 ORTHO05D006200 1.0e-92 344.4 328 54.6
CSS0014290 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 5.1e-92 342.0 344 52.3
QL10p008945 Quercus lobata HOM05D005107 ORTHO05D006200 2.6e-91 339.7 347 50.1
Cpa.g.sc153.5 Carica papaya HOM05D005107 ORTHO05D006200 5.7e-91 338.6 345 51.3
Prupe.5G170500 Prunus persica HOM05D005107 ORTHO05D006200 7.4e-91 338.2 345 51.9
TAR622G1391 Trochodendron aralioides HOM05D005107 ORTHO05D006200 7.0e-89 331.6 344 52.9
MD06G1170900 Malus domestica HOM05D005107 ORTHO05D006200 1.5e-88 330.5 345 51.9
Sabra12G0063800 Salix brachista HOM05D005107 ORTHO05D006200 4.5e-88 328.9 345 51.6
FvH4_5g05630 Fragaria vesca HOM05D005107 ORTHO05D006200 5.9e-88 328.6 345 51.0
TAR374G1030 Trochodendron aralioides HOM05D005107 ORTHO05D006200 2.2e-87 326.6 345 50.1
RcHm_v2.0_Chr7g0193181 Rosa chinensis HOM05D005107 ORTHO05D006200 2.9e-87 326.2 355 51.0
Potri.015G079700 Populus trichocarpa HOM05D005107 ORTHO05D006200 3.8e-87 325.9 346 51.2
TWI23G1004 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 5.0e-87 325.5 344 50.3
Potri.012G088600 Populus trichocarpa HOM05D005107 ORTHO05D006200 1.1e-86 324.3 347 50.4
CSS0028022 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 1.4e-86 323.9 344 50.3
Thecc.03G018700 Theobroma cacao HOM05D005107 ORTHO05D006200 2.5e-86 323.2 344 48.5
CANSAT80G2623 Cannabis sativa HOM05D005107 ORTHO05D006200 7.2e-86 321.6 345 49.9
Atru.chr9.2518 Acer truncatum HOM05D005107 ORTHO05D006200 9.4e-86 321.2 348 51.4
Sc22g0001200 Simmondsia chinensis HOM05D005107 ORTHO05D006200 1.6e-85 320.5 343 50.4
unitig_26.g9615 Utricularia gibba HOM05D005107 ORTHO05D006200 8.0e-85 318.2 291 53.6
FAN04G1011 Fragaria x ananassa HOM05D005107 ORTHO05D006200 3.0e-84 316.2 345 50.4
Peaxi162Scf00255g00912 Petunia axillaris HOM05D005107 ORTHO05D006200 5.2e-84 315.5 345 50.4
FAN18G1528 Fragaria x ananassa HOM05D005107 ORTHO05D006200 2.0e-83 313.5 345 50.4
COL.COLO4_30099 Corchorus olitorius HOM05D005107 ORTHO05D006200 1.7e-82 310.5 344 47.4
Gorai.008G293700 Gossypium raimondii HOM05D005107 ORTHO05D006200 2.2e-82 310.1 345 47.8
Sabra15G0104000 Salix brachista HOM05D005107 ORTHO05D006200 2.2e-82 310.1 356 48.9
Gohir.D12G273300 Gossypium hirsutum HOM05D005107 ORTHO05D006200 2.8e-82 309.7 345 47.5
Cc06_g17290 Coffea canephora HOM05D005107 ORTHO05D006200 4.8e-82 308.9 335 49.3
Gohir.A12G272600 Gossypium hirsutum HOM05D005107 ORTHO05D006200 6.3e-82 308.5 345 47.8
Nn2g12593 Nelumbo nucifera HOM05D005107 ORTHO05D006200 6.3e-82 308.5 346 48.0
Duzib205G0074 Durio zibethinus HOM05D005107 ORTHO05D006200 1.1e-81 307.8 337 48.1
Haze_07542 Corylus avellana HOM05D005107 ORTHO05D006200 2.4e-81 306.6 291 55.3
TWI14G0467 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 2.4e-81 306.6 344 48.5
FAN08G1807 Fragaria x ananassa HOM05D005107 ORTHO05D006200 2.0e-80 303.5 346 49.4
CiPaw.11G023500 Carya illinoinensis HOM05D005107 ORTHO05D006200 2.6e-80 303.1 348 49.4
Eucgr.B00249 Eucalyptus grandis HOM05D005107 ORTHO05D006200 3.5e-80 302.8 344 49.1
Manes.06G107100 Manihot esculenta HOM05D005107 ORTHO05D006200 5.9e-80 302.0 345 50.4
Nn4g22685 Nelumbo nucifera HOM05D005107 ORTHO05D006200 2.5e-78 296.6 345 47.5
Nn4g22690 Nelumbo nucifera HOM05D005107 ORTHO05D006200 2.5e-78 296.6 345 47.5
Ciclev10021009m.g Citrus clementina HOM05D005107 ORTHO05D006200 1.8e-76 290.4 347 48.1
BolC9t53818H Brassica oleracea HOM05D005107 ORTHO05D006200 2.3e-76 290.0 347 45.0
Psat4g058600 Pisum sativum HOM05D005107 ORTHO05D006200 3.0e-76 289.7 343 46.1
Lj4g0022030 Lotus japonicus HOM05D005107 ORTHO05D006200 8.8e-76 288.1 343 45.8
Gorai.001G071700 Gossypium raimondii HOM05D005107 ORTHO05D006200 4.4e-75 285.8 345 44.3
MBI10_g44387_MAGBIO Magnolia biondii HOM05D005107 ORTHO05D006200 5.7e-75 285.4 340 47.1
Aqoxy3G02846 Aquilegia oxysepala HOM05D005107 ORTHO05D006200 9.7e-75 284.6 345 47.0
Gohir.A07G063500 Gossypium hirsutum HOM05D005107 ORTHO05D006200 9.7e-75 284.6 345 44.1
VMungo1309G0437 Vigna mungo HOM05D005107 ORTHO05D006200 1.3e-74 284.3 347 46.7
Gohir.D07G068200 Gossypium hirsutum HOM05D005107 ORTHO05D006200 1.7e-74 283.9 345 44.3
A09p08000 Brassica napus HOM05D005107 ORTHO05D006200 2.2e-74 283.5 338 45.6
C09p09050 Brassica napus HOM05D005107 ORTHO05D006200 6.3e-74 282.0 338 45.0
Thhalv10004512m.g Eutrema salsugineum HOM05D005107 ORTHO05D006200 1.4e-73 280.8 346 44.2
ClCG01G013290 Citrullus lanatus HOM05D005107 ORTHO05D006200 1.8e-73 280.4 345 47.2
HanXRQChr08g0235041 Helianthus annuus HOM05D005107 ORTHO05D006200 1.8e-73 280.4 345 45.8
Lj1g0017341 Lotus japonicus HOM05D005107 ORTHO05D006200 1.8e-73 280.4 344 45.1
Phvul.009G176100 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 5.3e-73 278.9 347 45.2
PGR083G1692 Punica granatum HOM05D005107 ORTHO05D006200 5.3e-73 278.9 349 45.8
TPR.G37531 Trifolium pratense HOM05D005107 ORTHO05D006200 1.2e-72 277.7 343 45.5
CARHR276850 Cardamine hirsuta HOM05D005107 ORTHO05D006200 1.6e-72 277.3 347 42.9
Glyma.06G180400 Glycine max HOM05D005107 ORTHO05D006200 2.0e-72 276.9 347 46.1
Lalb_Chr08g0236621 Lupinus albus HOM05D005107 ORTHO05D006200 2.0e-72 276.9 345 46.1
PSO063G3062 Papaver somniferum HOM05D005107 ORTHO05D006200 4.5e-72 275.8 347 46.4
Sed0009116 Sechium edule HOM05D005107 ORTHO05D006200 4.5e-72 275.8 345 45.5
Ca_21938_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 5.9e-72 275.4 347 44.7
Sp2g26180 Schrenkiella parvula HOM05D005107 ORTHO05D006200 7.7e-72 275.0 347 43.2
PSO832G2872 Papaver somniferum HOM05D005107 ORTHO05D006200 1.0e-71 274.6 349 46.1
Medtr4g105500 Medicago truncatula HOM05D005107 ORTHO05D006200 1.3e-71 274.2 331 45.0
arahy.Tifrunner.gnm1.ann1.6379ZA Arachis hypogaea HOM05D005107 ORTHO05D006200 3.8e-71 272.7 346 45.1
Glyma.04G185700 Glycine max HOM05D005107 ORTHO05D006200 3.8e-71 272.7 347 45.2
AL8G40070 Arabidopsis lyrata HOM05D005107 ORTHO05D006200 5.0e-71 272.3 346 42.8
Carub.0008s2376 Capsella rubella HOM05D005107 ORTHO05D006200 5.0e-71 272.3 347 42.4
arahy.Tifrunner.gnm1.ann1.5AH6W7 Arachis hypogaea HOM05D005107 ORTHO05D006200 6.5e-71 271.9 346 45.1
THA.LOC104818212 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 6.5e-71 271.9 345 44.9
AUR62018143 Chenopodium quinoa HOM05D005107 ORTHO05D006200 8.5e-71 271.6 305 48.9
THA.LOC104821481 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 8.5e-71 271.6 348 43.7
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 1.1e-70 271.2 343 46.9
Aa31LG11G620 Aethionema arabicum HOM05D005107 ORTHO05D006200 1.9e-70 270.4 337 43.0
Manes.14G063800 Manihot esculenta HOM05D005107 ORTHO05D006200 4.2e-70 269.2 308 49.0
Phvul.003G202200 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 4.2e-70 269.2 349 45.3
BraA09t36452Z Brassica rapa HOM05D005107 ORTHO05D006200 1.6e-69 267.3 293 48.1
HanXRQChr05g0154601 Helianthus annuus HOM05D005107 ORTHO05D006200 1.6e-69 267.3 351 44.2
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 2.1e-69 266.9 318 45.9
MELO3C002281.2 Cucumis melo HOM05D005107 ORTHO05D006200 1.0e-68 264.6 347 45.0
VMungo1215G1987 Vigna mungo HOM05D005107 ORTHO05D006200 1.0e-68 264.6 341 44.0
AT5G63050 Arabidopsis thaliana HOM05D005107 ORTHO05D006200 1.4e-68 264.2 346 41.6
AUR62042560 Chenopodium quinoa HOM05D005107 ORTHO05D006200 2.3e-68 263.5 304 47.4
DCAR_016047 Daucus carota HOM05D005107 ORTHO05D006200 2.3e-68 263.5 344 43.3
FAN18G1595 Fragaria x ananassa HOM05D005107 ORTHO05D008464 3.0e-68 263.1 320 46.9
FAN13G2858 Fragaria x ananassa HOM05D005107 ORTHO05D008464 1.2e-67 261.2 320 46.9
Ca_16156_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 4.4e-67 259.2 347 43.5
TWI39G0316 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 7.5e-67 258.5 351 42.7
ECA246G1934 Erigeron canadensis HOM05D005107 ORTHO05D006200 9.8e-67 258.1 337 45.4
BcaB04g19949 Brassica carinata HOM05D005107 ORTHO05D006200 1.7e-66 257.3 286 47.9
Lsat_1_v5_gn_5_15301 Lactuca sativa HOM05D005107 ORTHO05D006200 2.2e-66 256.9 342 43.3
Ah.10g031930 Amaranthus hybridus HOM05D005107 ORTHO05D006200 4.1e-65 252.7 341 42.2
Dinv38563 Davidia involucrata HOM05D003072 ORTHO05D008464 7.0e-65 251.9 260 52.7
EL10Ac2g03054 Beta vulgaris HOM05D005107 ORTHO05D006200 9.1e-65 251.5 346 41.3
BraA06t25929Z Brassica rapa HOM05D005107 ORTHO05D006200 1.6e-64 250.8 347 42.7
Sed0010155 Sechium edule HOM05D005107 ORTHO05D006200 1.3e-63 247.7 345 42.9
A06p29810 Brassica napus HOM05D005107 ORTHO05D006200 2.9e-63 246.5 347 42.7
CDE05G1562 Ceratophyllum demersum HOM05D005107 ORTHO05D006200 1.9e-62 243.8 279 45.2
BolC8t50877H Brassica oleracea HOM05D005107 ORTHO05D006200 4.2e-62 242.7 349 42.1
CsaV3_1G008660 Cucumis sativus L. HOM05D005107 ORTHO05D006200 1.6e-61 240.7 345 43.2
Oeu024703.1 Olea europaea HOM05D005107 ORTHO05D006200 1.6e-61 240.7 199 61.3
C08p32660 Brassica napus HOM05D005107 ORTHO05D006200 1.0e-60 238.0 344 42.2
Lj5A126T86 Lonicera japonica HOM05D005107 ORTHO05D006200 2.3e-60 236.9 300 45.3
Medtr3g077490 Medicago truncatula HOM05D005107 ORTHO05D006200 3.0e-60 236.5 349 40.7
BolC3t18614H Brassica oleracea HOM05D005107 ORTHO05D006200 1.2e-59 234.6 349 41.0
Psat5g115520 Pisum sativum HOM05D005107 ORTHO05D006200 4.4e-59 232.6 347 40.6
TPR.G14919 Trifolium pratense HOM05D005107 ORTHO05D006200 9.8e-59 231.5 343 40.5
ClCG06G017120 Citrullus lanatus HOM05D005107 ORTHO05D006200 5.4e-57 225.7 345 38.6
HPP92_001300 Vanilla planifolia HOM05D005107 ORTHO05D006200 2.3e-55 220.3 283 42.0
BcaC01g02550 Brassica carinata HOM05D005107 ORTHO05D006200 1.1e-54 218.0 349 40.4
CiPaw.12G028400 Carya illinoinensis HOM05D005107 ORTHO05D006200 1.6e-53 214.2 334 38.6
SGA_v2.0_scaffold90G27886 Striga asiatica HOM05D005107 ORTHO05D006200 1.6e-53 214.2 211 49.8
MELO3C026284.2 Cucumis melo HOM05D005107 ORTHO05D006200 3.4e-51 206.5 327 37.3
Eucgr.J01240 Eucalyptus grandis HOM05D005107 ORTHO05D006200 1.7e-50 204.1 137 66.4
Eucgr.C04410 Eucalyptus grandis HOM05D005107 ORTHO05D006200 7.8e-48 195.3 137 65.0
Eucgr.C03135 Eucalyptus grandis HOM05D005107 ORTHO05D006200 1.2e-45 188.0 129 64.3
ECA232G4933 Erigeron canadensis HOM05D005107 ORTHO05D006200 2.3e-44 183.7 343 35.9
Hund13172 Selenicereus undatus HOM05D005107 ORTHO05D006200 4.0e-44 183.0 294 36.4
ECA232G2224 Erigeron canadensis HOM05D005107 ORTHO05D006200 7.5e-43 178.7 240 41.7
C03p63570 Brassica napus HOM05D005107 ORTHO05D006200 2.2e-42 177.2 311 37.6
BcaB02g09719 Brassica carinata HOM05D005107 ORTHO05D006200 4.0e-36 156.4 344 34.9
HanXRQChr02g0035961 Helianthus annuus HOM05D005107 ORTHO05D006200 4.4e-35 152.9 285 36.5
Lsat_1_v5_gn_1_28200 Lactuca sativa HOM05D005107 ORTHO05D006200 4.9e-34 149.4 328 35.4
BcaC04g23368 Brassica carinata HOM05D005107 ORTHO05D006200 1.8e-28 131.0 103 59.2
SEGI_21940 Sequoiadendron giganteum HOM05D024261 ORTHO05D006200 1.5e-11 74.7 175 28.0
Duzib068G0452 Durio zibethinus HOM05D005107 ORTHO05D006200 1.9e-09 67.8 132 33.3
SGA_v2.0_scaffold25G11046 Striga asiatica HOM05D000637 ORTHO05D002686 1.6e-08 64.7 58 55.2
AagrBONN_evm.TU.Sc2ySwM_362.2194 Anthoceros agrestis HOM05D024261 ORTHO05D026617 5.1e-07 59.7 260 21.9
Hma1.2p1_0522F.1_g171880 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 1.1e-06 58.5 39 64.1


User provided reference genes

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