Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.23132 Avicennia marina HOM05D005308 ORTHO05D006494 0.0e+00 1315.8 668 100.0
MSTRG.11457 Avicennia marina HOM05D005308 ORTHO05D006494 7.8e-278 960.3 668 73.1
Migut.I00006 Erythranthe guttata HOM05D005308 ORTHO05D006494 8.4e-224 780.8 690 63.5
Oeu052497.1 Olea europaea HOM05D005308 ORTHO05D006494 1.1e-223 780.4 671 61.0
SalBow5G1122 Salvia bowleyana HOM05D005308 ORTHO05D006494 1.3e-219 766.9 522 73.9
Oeu016389.1 Olea europaea HOM05D005308 ORTHO05D006494 2.5e-215 752.7 648 60.5
Nitab4.5_0003783g0070 Nicotiana tabacum HOM05D005308 ORTHO05D006494 1.8e-194 683.3 678 54.4
Cc03_g06460 Coffea canephora HOM05D005308 ORTHO05D006494 4.2e-191 672.2 640 56.4
Nitab4.5_0000110g0380 Nicotiana tabacum HOM05D005308 ORTHO05D006494 4.2e-191 672.2 678 54.1
Dinv39406 Davidia involucrata HOM05D005308 ORTHO05D006494 2.1e-190 669.8 678 55.2
Cfa018137 Carpinus fangiana HOM05D005308 ORTHO05D006494 3.6e-190 669.1 686 53.1
Haze_17987 Corylus avellana HOM05D005308 ORTHO05D006494 8.0e-190 667.9 680 54.1
Lj4P784T41 Lonicera japonica HOM05D005308 ORTHO05D006494 8.0e-190 667.9 599 59.4
RcHm_v2.0_Chr6g0300791 Rosa chinensis HOM05D005308 ORTHO05D006494 1.0e-189 667.5 633 57.8
Hma1.2p1_0077F.1_g039700 Hydrangea macrophylla HOM05D005308 ORTHO05D006494 2.0e-188 663.3 638 57.2
CiPaw.15G075700 Carya illinoinensis HOM05D005308 ORTHO05D006494 6.3e-187 658.3 680 53.4
FvH4_2g39960 Fragaria vesca HOM05D005308 ORTHO05D006494 6.3e-187 658.3 598 58.9
Atru.chr13.513 Acer truncatum HOM05D005308 ORTHO05D006494 5.3e-186 655.2 613 56.4
PGSC0003DMG400005144 Solanum tuberosum HOM05D005308 ORTHO05D006494 5.3e-186 655.2 675 53.3
Atru.chr8.2603 Acer truncatum HOM05D005308 ORTHO05D006494 9.1e-186 654.4 613 56.3
FAN27G1201 Fragaria x ananassa HOM05D005308 ORTHO05D006494 9.1e-186 654.4 599 58.6
FAN15G3722 Fragaria x ananassa HOM05D005308 ORTHO05D006494 1.2e-185 654.1 599 59.1
Solyc04g080180.1 Solanum lycopersicum HOM05D005308 ORTHO05D006494 4.5e-185 652.1 674 53.3
Ciclev10000534m.g Citrus clementina HOM05D005308 ORTHO05D006494 1.7e-184 650.2 609 57.8
QL02p007937 Quercus lobata HOM05D005308 ORTHO05D006494 2.2e-184 649.8 610 56.6
Prupe.1G381500 Prunus persica HOM05D005308 ORTHO05D006494 2.9e-184 649.4 643 55.4
CAN.G1126.42 Capsicum annuum HOM05D005308 ORTHO05D006494 1.9e-183 646.7 662 53.8
Manes.05G161700 Manihot esculenta HOM05D005308 ORTHO05D006494 4.2e-183 645.6 618 55.3
GSVIVG01009686001 Vitis vinifera HOM05D005308 ORTHO05D006494 4.7e-182 642.1 597 57.0
Glyma.14G076200 Glycine max HOM05D005308 ORTHO05D006494 1.4e-181 640.6 675 53.2
Sopen04g033770 Solanum pennellii HOM05D005308 ORTHO05D006494 4.0e-181 639.0 671 52.9
Peaxi162Scf00690g00113 Petunia axillaris HOM05D005308 ORTHO05D006494 3.4e-180 636.0 649 53.0
MD15G1030000 Malus domestica HOM05D005308 ORTHO05D006494 1.3e-179 634.0 599 56.9
Eucgr.F01908 Eucalyptus grandis HOM05D005308 ORTHO05D006494 1.1e-178 630.9 607 54.9
vmacro04517 Vaccinium macrocarpon HOM05D005308 ORTHO05D006494 1.8e-178 630.2 607 55.0
MELO3C010930.2 Cucumis melo HOM05D005308 ORTHO05D006494 1.6e-177 627.1 665 52.9
Duzib093G0415 Durio zibethinus HOM05D005308 ORTHO05D006494 1.6e-177 627.1 628 54.3
MD08G1033400 Malus domestica HOM05D005308 ORTHO05D006494 3.5e-177 625.9 600 56.3
Sabra02G0199700 Salix brachista HOM05D005308 ORTHO05D006494 4.5e-177 625.5 527 60.9
ClCG08G015210 Citrullus lanatus HOM05D005308 ORTHO05D006494 5.9e-177 625.2 616 55.2
ClCG08G015240 Citrullus lanatus HOM05D005308 ORTHO05D006494 5.9e-177 625.2 616 55.2
VMungo0647G0443 Vigna mungo HOM05D005308 ORTHO05D006494 1.7e-176 623.6 599 56.4
PGR031G2270 Punica granatum HOM05D005308 ORTHO05D006494 6.6e-176 621.7 694 50.9
CsaV3_2G028560 Cucumis sativus L. HOM05D005308 ORTHO05D006494 7.2e-175 618.2 672 51.9
Lj5g0021582 Lotus japonicus HOM05D005308 ORTHO05D006494 9.5e-175 617.8 617 54.8
Glyma.17G249600 Glycine max HOM05D005308 ORTHO05D006494 1.6e-174 617.1 678 52.4
Phvul.001G015400 Phaseolus vulgaris HOM05D005308 ORTHO05D006494 2.1e-174 616.7 597 55.6
SGA_v2.0_scaffold90G27910 Striga asiatica HOM05D005308 ORTHO05D006494 1.4e-173 614.0 710 51.0
Thecc.08G024400 Theobroma cacao HOM05D005308 ORTHO05D006494 4.0e-173 612.5 637 52.9
Potri.002G262900 Populus trichocarpa HOM05D005308 ORTHO05D006494 6.8e-173 611.7 527 59.8
Gohir.D05G198500 Gossypium hirsutum HOM05D005308 ORTHO05D006494 1.5e-172 610.5 679 50.8
CsaV3_2G028600 Cucumis sativus L. HOM05D005308 ORTHO05D006494 2.0e-172 610.1 615 54.1
Rhsim07G0237100 Rhododendron simsii HOM05D005308 ORTHO05D006494 9.8e-172 607.8 686 50.7
Sc02g0006300 Simmondsia chinensis HOM05D005308 ORTHO05D006494 1.3e-171 607.4 620 54.5
Sed0011840 Sechium edule HOM05D005308 ORTHO05D006494 2.2e-171 606.7 624 53.8
Duzib041G0136 Durio zibethinus HOM05D005308 ORTHO05D006494 3.7e-171 605.9 634 52.8
Gorai.009G203600 Gossypium raimondii HOM05D005308 ORTHO05D006494 1.1e-170 604.4 679 50.5
Potri.014G180900 Populus trichocarpa HOM05D005308 ORTHO05D006494 1.4e-170 604.0 608 54.8
Gohir.A05G195300 Gossypium hirsutum HOM05D005308 ORTHO05D006494 2.4e-170 603.2 598 55.0
Gorai.010G011100 Gossypium raimondii HOM05D005308 ORTHO05D006494 2.4e-170 603.2 617 53.3
Gohir.A06G010900 Gossypium hirsutum HOM05D005308 ORTHO05D006494 1.2e-169 600.9 617 52.7
Medtr1g022045 Medicago truncatula HOM05D005308 ORTHO05D006494 1.6e-169 600.5 676 50.0
Psat6g007480 Pisum sativum HOM05D005308 ORTHO05D006494 4.5e-169 599.0 661 50.2
Gohir.D06G008300 Gossypium hirsutum HOM05D005308 ORTHO05D006494 7.8e-169 598.2 617 53.0
Sed0021548 Sechium edule HOM05D005308 ORTHO05D006494 2.9e-168 596.3 625 53.3
EL10Ac9g23018 Beta vulgaris HOM05D005308 ORTHO05D006494 6.6e-168 595.1 617 52.5
Ca_13346_v3 Cicer arietinum L. HOM05D005308 ORTHO05D006494 1.5e-167 594.0 602 53.3
TPR.G29756 Trifolium pratense HOM05D005308 ORTHO05D006494 4.3e-167 592.4 643 50.2
TWI73G1022 Tripterygium wilfordii HOM05D005308 ORTHO05D006494 5.6e-167 592.0 627 53.1
AUR62032897 Chenopodium quinoa HOM05D005308 ORTHO05D006494 2.1e-166 590.1 589 53.8
Duzib116G0819 Durio zibethinus HOM05D005308 ORTHO05D006494 8.0e-166 588.2 630 51.7
COL.COLO4_26340 Corchorus olitorius HOM05D005308 ORTHO05D006494 1.4e-165 587.4 531 58.9
Lalb_Chr22g0355491 Lupinus albus HOM05D005308 ORTHO05D006494 5.2e-165 585.5 575 54.4
Ah.01g011450 Amaranthus hybridus HOM05D005308 ORTHO05D006494 8.9e-165 584.7 614 51.8
DCAR_019524 Daucus carota HOM05D005308 ORTHO05D006494 3.7e-163 579.3 606 53.5
Aqoxy3G02057 Aquilegia oxysepala HOM05D005308 ORTHO05D006494 4.9e-163 578.9 625 49.8
DCAR_020966 Daucus carota HOM05D005308 ORTHO05D006494 3.3e-159 566.2 572 54.7
CSS0027115 Camellia sinensis var. sinensis HOM05D005308 ORTHO05D006494 1.2e-158 564.3 588 53.6
HanXRQChr05g0151851 Helianthus annuus HOM05D005308 ORTHO05D006494 3.4e-156 556.2 612 52.1
Carub.0002s2195 Capsella rubella HOM05D005308 ORTHO05D006494 2.4e-154 550.1 668 48.1
THA.LOC104813841 Tarenaya hassleriana HOM05D005308 ORTHO05D006494 3.0e-152 543.1 696 47.0
AUR62017754 Chenopodium quinoa HOM05D005308 ORTHO05D006494 3.9e-152 542.7 494 56.7
PSO063G3485 Papaver somniferum HOM05D005308 ORTHO05D006494 2.5e-151 540.0 629 48.3
Sp5g30270 Schrenkiella parvula HOM05D005308 ORTHO05D006494 3.3e-151 539.7 670 47.3
TAR376G0813 Trochodendron aralioides HOM05D005308 ORTHO05D006494 4.3e-151 539.3 549 52.5
PSO782G4716 Papaver somniferum HOM05D005308 ORTHO05D006494 5.6e-151 538.9 632 48.4
Lsat_1_v5_gn_5_29021 Lactuca sativa HOM05D005308 ORTHO05D006494 2.8e-150 536.6 546 53.3
ECA246G5303 Erigeron canadensis HOM05D005308 ORTHO05D006494 2.3e-149 533.5 568 52.3
Thhalv10018268m.g Eutrema salsugineum HOM05D005308 ORTHO05D006494 6.8e-149 531.9 668 46.7
CSS0028044 Camellia sinensis var. sinensis HOM05D005308 ORTHO05D006494 5.8e-148 528.9 442 62.2
AT1G75140 Arabidopsis thaliana HOM05D005308 ORTHO05D006494 1.1e-146 524.6 604 48.5
AL2G35040 Arabidopsis lyrata HOM05D005308 ORTHO05D006494 1.9e-146 523.9 676 46.2
CARHR068470 Cardamine hirsuta HOM05D005308 ORTHO05D006494 7.1e-146 521.9 600 47.8
Aa31LG7G4080 Aethionema arabicum HOM05D005308 ORTHO05D006494 1.6e-145 520.8 668 45.2
Nn3g19273 Nelumbo nucifera HOM05D005308 ORTHO05D006494 1.6e-145 520.8 539 51.4
THA.LOC104806374 Tarenaya hassleriana HOM05D005308 ORTHO05D006494 6.0e-145 518.8 668 46.4
BraA07t30544Z Brassica rapa HOM05D005308 ORTHO05D006494 1.0e-144 518.1 667 46.0
A07p29040 Brassica napus HOM05D005308 ORTHO05D006494 5.6e-143 512.3 667 45.4
BolC6t38403H Brassica oleracea HOM05D005308 ORTHO05D006494 7.3e-143 511.9 590 47.6
CDE11G0691 Ceratophyllum demersum HOM05D005308 ORTHO05D006494 7.3e-143 511.9 622 45.0
MBI04_g27271_MAGBIO Magnolia biondii HOM05D005308 ORTHO05D006494 4.7e-142 509.2 664 44.7
BcaB02g06995 Brassica carinata HOM05D005308 ORTHO05D006494 1.2e-140 504.6 588 47.6
AT1G19370 Arabidopsis thaliana HOM05D005308 ORTHO05D006494 3.4e-140 503.1 600 47.0
C06p32820 Brassica napus HOM05D005308 ORTHO05D006494 3.4e-140 503.1 594 47.5
Carub.0001s1896 Capsella rubella HOM05D005308 ORTHO05D006494 7.6e-140 501.9 597 47.6
Aa31LG4G5330 Aethionema arabicum HOM05D005308 ORTHO05D006494 8.4e-139 498.4 580 47.6
CARHR019960 Cardamine hirsuta HOM05D005308 ORTHO05D006494 8.4e-139 498.4 557 49.0
AL1G31960 Arabidopsis lyrata HOM05D005308 ORTHO05D006494 1.2e-137 494.6 599 46.7
BcaB02g07009 Brassica carinata HOM05D005308 ORTHO05D006494 2.1e-137 493.8 607 46.6
Sp1g17280 Schrenkiella parvula HOM05D005308 ORTHO05D006494 2.7e-137 493.4 599 45.9
BraA06t24665Z Brassica rapa HOM05D005308 ORTHO05D006494 8.7e-136 488.4 528 48.9
A06p15530 Brassica napus HOM05D005308 ORTHO05D006494 1.5e-135 487.6 528 49.1
BolC5t30482H Brassica oleracea HOM05D005308 ORTHO05D006494 2.4e-133 480.3 533 47.7
BcaB07g31957 Brassica carinata HOM05D005308 ORTHO05D006494 1.5e-132 477.6 511 49.1
ATR0829G103 Amborella trichopoda HOM05D005308 ORTHO05D006494 7.3e-127 458.8 598 43.3
Thhalv10009294m.g Eutrema salsugineum HOM05D005308 ORTHO05D006494 5.3e-125 452.6 602 44.4
SHI08167 Sapria himalayana HOM05D005308 ORTHO05D006494 1.2e-121 441.4 515 47.0
SEGI_39092 Sequoiadendron giganteum HOM05D005308 ORTHO05D006494 1.2e-121 441.4 643 41.4
MBI04_g21134_MAGBIO Magnolia biondii HOM05D005308 ORTHO05D006494 6.9e-117 425.6 658 39.7
Zm00001eb269050 Zea mays HOM05D005308 ORTHO05D006494 7.9e-105 385.6 629 38.2
Os06g0115200 Oryza sativa ssp. japonica HOM05D005308 ORTHO05D006494 1.0e-104 385.2 636 37.3
unitig_0.g1436 Utricularia gibba HOM05D005308 ORTHO05D006494 5.9e-100 369.4 403 50.9
Actinidia38015 Actinidia chinensis HOM05D005308 ORTHO05D006494 2.9e-99 367.1 623 40.0
Pp3c20_21760 Physcomitrium patens HOM05D005308 ORTHO05D006494 3.9e-80 303.5 539 35.6
AagrBONN_evm.TU.Sc2ySwM_228.2792 Anthoceros agrestis HOM05D005308 ORTHO05D006494 5.7e-79 299.7 587 32.9
Pp3c10_23930 Physcomitrium patens HOM05D005308 ORTHO05D006494 1.4e-77 295.0 647 32.8
C05p17770 Brassica napus HOM05D005308 ORTHO05D006494 2.4e-77 294.3 266 53.4
Mapoly0094s0054 Marchantia polymorpha HOM05D005308 ORTHO05D006494 4.1e-77 293.5 583 33.6
SMO361G0791 Selaginella moellendorffii HOM05D005308 ORTHO05D006494 7.0e-77 292.7 414 39.9
BcaNung07297 Brassica carinata HOM05D005308 ORTHO05D006494 4.7e-73 280.0 234 57.7
BcaNung07223 Brassica carinata HOM05D005308 ORTHO05D006494 1.8e-69 268.1 318 46.5
BcaB02g07002 Brassica carinata HOM05D005308 ORTHO05D006494 5.0e-67 260.0 221 56.6
unitig_0.g1437 Utricularia gibba HOM05D005308 ORTHO05D006494 5.9e-52 209.9 242 50.8
A07p29060 Brassica napus HOM05D005308 ORTHO05D006494 6.4e-46 189.9 130 68.5
MCO12G330 Micromonas commoda HOM05D005308 ORTHO05D006494 1.3e-09 69.3 115 35.7
SHI17314 Sapria himalayana HOM05D005308 ORTHO05D006494 4.0e-08 64.3 63 55.6


User provided reference genes

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