Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.23103 Avicennia marina HOM05D004802 ORTHO05D005591 5.3e-72 274.2 139 100.0
SGA_v2.0_scaffold114G31844 Striga asiatica HOM05D004802 ORTHO05D005591 1.0e-62 243.4 142 88.0
HanXRQChr05g0155531 Helianthus annuus HOM05D004802 ORTHO05D005591 6.5e-62 240.7 142 84.5
ECA232G0284 Erigeron canadensis HOM05D004802 ORTHO05D005591 1.1e-61 240.0 144 84.7
Migut.D01783 Erythranthe guttata HOM05D004802 ORTHO05D005591 1.1e-61 240.0 142 85.2
Cfa019082 Carpinus fangiana HOM05D004802 ORTHO05D005591 1.2e-60 236.5 141 84.4
DCAR_021562 Daucus carota HOM05D004802 ORTHO05D005591 1.2e-60 236.5 142 85.2
TAR362G1012 Trochodendron aralioides HOM05D004802 ORTHO05D005591 3.6e-60 235.0 143 83.2
Lsat_1_v5_gn_5_17000 Lactuca sativa HOM05D004802 ORTHO05D005591 4.7e-60 234.6 144 81.9
GSVIVG01007807001 Vitis vinifera HOM05D004802 ORTHO05D005591 6.1e-60 234.2 141 83.7
DCAR_016496 Daucus carota HOM05D004802 ORTHO05D005591 1.0e-59 233.4 143 82.5
CSS0033619 Camellia sinensis var. sinensis HOM05D004802 ORTHO05D005591 1.8e-59 232.6 144 82.6
CsaV3_1G001710 Cucumis sativus L. HOM05D004802 ORTHO05D005591 6.8e-59 230.7 144 83.3
Glyma.04G171700 Glycine max HOM05D004802 ORTHO05D005591 1.2e-58 229.9 144 81.9
Glyma.06G192200 Glycine max HOM05D004802 ORTHO05D005591 1.2e-58 229.9 143 81.8
Potri.014G111100 Populus trichocarpa HOM05D004802 ORTHO05D005591 2.6e-58 228.8 143 80.4
PGR083G1798 Punica granatum HOM05D004802 ORTHO05D005591 3.4e-58 228.4 143 80.4
Eucgr.B00348 Eucalyptus grandis HOM05D004802 ORTHO05D005591 5.7e-58 227.6 146 78.8
Hma1.2p1_0483F.1_g162710 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 5.7e-58 227.6 140 82.9
RcHm_v2.0_Chr7g0179521 Rosa chinensis HOM05D004802 ORTHO05D005591 5.7e-58 227.6 142 82.4
MD14G1184900 Malus domestica HOM05D004802 ORTHO05D005591 7.5e-58 227.3 139 82.7
QL03p066954 Quercus lobata HOM05D004802 ORTHO05D005591 7.5e-58 227.3 141 81.6
LjContig00081g0027263 Lotus japonicus HOM05D004802 ORTHO05D005591 9.8e-58 226.9 142 81.0
MBI19_g12136_MAGBIO Magnolia biondii HOM05D004802 ORTHO05D005591 9.8e-58 226.9 143 79.0
Sed0010100 Sechium edule HOM05D004802 ORTHO05D005591 9.8e-58 226.9 144 79.9
Cpa.g.sc110.33 Carica papaya HOM05D004802 ORTHO05D005591 1.3e-57 226.5 144 81.2
Lalb_Chr23g0265291 Lupinus albus HOM05D004802 ORTHO05D005591 1.3e-57 226.5 150 77.3
unitig_27.g24928 Utricularia gibba HOM05D004802 ORTHO05D005591 1.7e-57 226.1 143 81.1
Prupe.5G177600 Prunus persica HOM05D004802 ORTHO05D005591 3.7e-57 224.9 141 80.1
vmacro16596 Vaccinium macrocarpon HOM05D004802 ORTHO05D005591 4.9e-57 224.6 144 79.2
CDE01G0824 Ceratophyllum demersum HOM05D004802 ORTHO05D005591 6.3e-57 224.2 145 78.6
Sc16g0001640 Simmondsia chinensis HOM05D004802 ORTHO05D005591 6.3e-57 224.2 145 77.9
TPR.G20968 Trifolium pratense HOM05D004802 ORTHO05D005591 8.3e-57 223.8 139 78.4
ATR0796G060 Amborella trichopoda HOM05D004802 ORTHO05D005591 1.4e-56 223.0 140 79.3
CANSAT80G2080 Cannabis sativa HOM05D004802 ORTHO05D005591 1.4e-56 223.0 144 80.6
Manes.12G158200 Manihot esculenta HOM05D004802 ORTHO05D005591 1.4e-56 223.0 141 79.4
Oeu026523.1 Olea europaea HOM05D004802 ORTHO05D005591 1.4e-56 223.0 145 80.0
TPR.G6374 Trifolium pratense HOM05D004802 ORTHO05D005591 3.1e-56 221.9 139 77.7
Aqoxy5G00387 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 4.1e-56 221.5 144 78.5
HanXRQChr05g0163301 Helianthus annuus HOM05D004802 ORTHO05D005591 4.1e-56 221.5 144 81.2
HanXRQChr05g0163571 Helianthus annuus HOM05D004802 ORTHO05D005591 4.1e-56 221.5 144 81.2
Psat2g170440 Pisum sativum HOM05D004802 ORTHO05D005591 9.1e-56 220.3 144 76.4
Solyc03g114050.3 Solanum lycopersicum HOM05D004802 ORTHO05D005591 1.2e-55 219.9 139 80.6
Sopen03g033100 Solanum pennellii HOM05D004802 ORTHO05D005591 1.2e-55 219.9 139 80.6
Aqoxy3G02494 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 1.6e-55 219.5 143 79.7
arahy.Tifrunner.gnm1.ann1.J5PS4T Arachis hypogaea HOM05D004802 ORTHO05D005591 1.6e-55 219.5 146 76.0
arahy.Tifrunner.gnm1.ann1.H02ACK Arachis hypogaea HOM05D004802 ORTHO05D005591 2.0e-55 219.2 146 76.7
MBI18_g21823_MAGBIO Magnolia biondii HOM05D004802 ORTHO05D005591 2.7e-55 218.8 144 76.4
SalBow2G1273 Salvia bowleyana HOM05D004802 ORTHO05D005591 4.5e-55 218.0 143 81.1
Rhsim12G0162600 Rhododendron simsii HOM05D004802 ORTHO05D005591 5.9e-55 217.6 144 79.9
Sc12g0005500 Simmondsia chinensis HOM05D004802 ORTHO05D005591 1.0e-54 216.9 144 75.7
HPP92_014441 Vanilla planifolia HOM05D004802 ORTHO05D005591 1.0e-54 216.9 144 77.1
TWI32G0003 Tripterygium wilfordii HOM05D004802 ORTHO05D005591 1.3e-54 216.5 143 81.1
Actinidia34948 Actinidia chinensis HOM05D004802 ORTHO05D005591 1.7e-54 216.1 132 84.1
Actinidia19087 Actinidia chinensis HOM05D004802 ORTHO05D005591 2.3e-54 215.7 130 85.4
Thecc.03G006700 Theobroma cacao HOM05D004802 ORTHO05D005591 2.3e-54 215.7 141 81.6
VMungo1309G2385 Vigna mungo HOM05D004802 ORTHO05D005591 2.3e-54 215.7 143 77.6
Ciclev10022742m.g Citrus clementina HOM05D004802 ORTHO05D005591 5.0e-54 214.5 145 78.6
Duzib068G0850 Durio zibethinus HOM05D004802 ORTHO05D005591 5.0e-54 214.5 148 77.7
Nitab4.5_0000499g0020 Nicotiana tabacum HOM05D004802 ORTHO05D005591 5.0e-54 214.5 144 77.1
PSO170G0191 Papaver somniferum HOM05D004802 ORTHO05D005591 5.0e-54 214.5 148 75.7
COL.COLO4_24762 Corchorus olitorius HOM05D004802 ORTHO05D005591 6.6e-54 214.2 144 79.2
Phvul.009G188900 Phaseolus vulgaris HOM05D004802 ORTHO05D005591 6.6e-54 214.2 143 76.2
Sp1g06517 Schrenkiella parvula HOM05D004802 ORTHO05D005591 6.6e-54 214.2 144 78.5
Hund18328 Selenicereus undatus HOM05D004802 ORTHO05D005591 6.6e-54 214.2 139 79.1
Atru.chr9.2421 Acer truncatum HOM05D004802 ORTHO05D005591 8.6e-54 213.8 152 72.4
AUR62025410 Chenopodium quinoa HOM05D004802 ORTHO05D005591 1.1e-53 213.4 143 76.9
A09p66160 Brassica napus HOM05D004802 ORTHO05D005591 1.5e-53 213.0 144 77.8
BraA09t41954Z Brassica rapa HOM05D004802 ORTHO05D005591 1.5e-53 213.0 144 77.8
Cc00_g03600 Coffea canephora HOM05D004802 ORTHO05D005591 1.9e-53 212.6 147 73.5
ECA246G1319 Erigeron canadensis HOM05D004802 ORTHO05D005591 1.9e-53 212.6 165 69.1
FvH4_5g16620 Fragaria vesca HOM05D004802 ORTHO05D005591 1.9e-53 212.6 141 77.3
Dinv41117 Davidia involucrata HOM05D001600 ORTHO05D001502 2.5e-53 212.2 131 84.0
Manes.15G185900 Manihot esculenta HOM05D004802 ORTHO05D005591 2.5e-53 212.2 140 77.9
Potri.002G185800 Populus trichocarpa HOM05D004802 ORTHO05D005591 2.5e-53 212.2 145 73.8
Ah.08g213760 Amaranthus hybridus HOM05D004802 ORTHO05D005591 3.3e-53 211.8 141 76.6
BcaC07g41973 Brassica carinata HOM05D004802 ORTHO05D005591 3.3e-53 211.8 148 76.4
C08p50320 Brassica napus HOM05D004802 ORTHO05D005591 3.3e-53 211.8 148 76.4
BolC8t52561H Brassica oleracea HOM05D004802 ORTHO05D005591 3.3e-53 211.8 148 76.4
AL1G18110 Arabidopsis lyrata HOM05D004802 ORTHO05D005591 4.3e-53 211.5 144 76.4
EL10Ac7g17734 Beta vulgaris HOM05D004802 ORTHO05D005591 5.6e-53 211.1 141 77.3
FAN18G4009 Fragaria x ananassa HOM05D004802 ORTHO05D005591 5.6e-53 211.1 141 76.6
THA.LOC104818227 Tarenaya hassleriana HOM05D004802 ORTHO05D005591 5.6e-53 211.1 146 74.7
BolC5t29353H Brassica oleracea HOM05D000129 ORTHO05D005591 7.2e-53 210.7 145 75.9
AUR62008830 Chenopodium quinoa HOM05D004802 ORTHO05D005591 7.2e-53 210.7 143 75.5
Aqoxy3G01788 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 9.5e-53 210.3 146 74.0
Carub.0005s0629 Capsella rubella HOM05D004802 ORTHO05D005591 1.2e-52 209.9 145 73.1
FAN13G0264 Fragaria x ananassa HOM05D004802 ORTHO05D005591 1.2e-52 209.9 140 76.4
PSO782G1633 Papaver somniferum HOM05D004802 ORTHO05D005591 1.6e-52 209.5 148 73.6
TWI75G1644 Tripterygium wilfordii HOM05D004802 ORTHO05D005591 2.1e-52 209.1 143 79.7
BraA06t23701Z Brassica rapa HOM05D004802 ORTHO05D005591 2.8e-52 208.8 145 74.5
CARHR007640 Cardamine hirsuta HOM05D004802 ORTHO05D005591 2.8e-52 208.8 144 75.7
MD06G1178500 Malus domestica HOM05D004802 ORTHO05D005591 3.6e-52 208.4 114 87.7
Peaxi162Scf00689g00332 Petunia axillaris HOM05D004802 ORTHO05D005591 3.6e-52 208.4 141 78.0
THA.LOC104821462 Tarenaya hassleriana HOM05D004802 ORTHO05D005591 6.1e-52 207.6 146 73.3
FAN08G2523 Fragaria x ananassa HOM05D004802 ORTHO05D005591 1.0e-51 206.8 139 76.3
PGSC0003DMG400024483 Solanum tuberosum HOM05D004802 ORTHO05D005591 1.4e-51 206.5 146 75.3
Aa31LG3G15940 Aethionema arabicum HOM05D004802 ORTHO05D005591 2.3e-51 205.7 146 73.3
arahy.Tifrunner.gnm1.ann1.RYE93B Arachis hypogaea HOM05D004802 ORTHO05D005591 2.3e-51 205.7 170 65.3
Cpa.g.sc170.28 Carica papaya HOM05D004802 ORTHO05D005591 3.0e-51 205.3 133 79.7
AT1G07830 Arabidopsis thaliana HOM05D004802 ORTHO05D005591 4.0e-51 204.9 145 75.9
BcaB02g06722 Brassica carinata HOM05D004802 ORTHO05D005591 5.2e-51 204.5 148 72.3
Gohir.A12G276300 Gossypium hirsutum HOM05D004802 ORTHO05D005591 5.2e-51 204.5 147 74.1
Gorai.008G297400 Gossypium raimondii HOM05D004802 ORTHO05D005591 5.2e-51 204.5 147 74.1
SEGI_23384 Sequoiadendron giganteum HOM05D004802 ORTHO05D005591 6.8e-51 204.1 140 74.3
Ca_06425_v3 Cicer arietinum L. HOM05D000308 ORTHO05D000194 8.9e-51 203.8 145 72.4
BcaC07g42500 Brassica carinata HOM05D004802 ORTHO05D005591 1.2e-50 203.4 148 71.6
C05p05910 Brassica napus HOM05D005594 ORTHO05D006403 1.5e-50 203.0 140 76.4
Medtr5g015850 Medicago truncatula HOM05D004802 ORTHO05D005591 1.5e-50 203.0 140 75.0
Gohir.D12G276900 Gossypium hirsutum HOM05D004802 ORTHO05D005591 2.0e-50 202.6 147 73.5
Thhalv10009035m.g Eutrema salsugineum HOM05D004802 ORTHO05D005591 1.3e-49 199.9 145 71.7
Peaxi162Scf00017g02344 Petunia axillaris HOM05D004802 ORTHO05D005591 3.7e-49 198.4 148 71.6
Zm00001eb378540 Zea mays HOM05D004802 ORTHO05D005591 4.9e-49 198.0 138 74.6
Thhalv10014955m.g Eutrema salsugineum HOM05D004802 ORTHO05D005591 1.8e-48 196.1 146 69.2
Nitab4.5_0001422g0100 Nicotiana tabacum HOM05D004802 ORTHO05D005591 1.8e-48 196.1 110 86.4
Dinv25814 Davidia involucrata HOM05D004802 ORTHO05D005591 2.4e-48 195.7 120 78.3
MELO3C017111.2 Cucumis melo HOM05D004802 ORTHO05D005591 3.2e-48 195.3 220 54.5
Rhsim08G0169000 Rhododendron simsii HOM05D004802 ORTHO05D005591 7.0e-48 194.1 172 62.2
Os06g0128500 Oryza sativa ssp. japonica HOM05D004802 ORTHO05D005591 1.7e-46 189.5 111 82.9
Hma1.2p1_2640F.1_g325880 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 5.0e-46 188.0 112 83.0
FAN04G1836 Fragaria x ananassa HOM05D004802 ORTHO05D005591 6.6e-46 187.6 116 79.3
CiPaw.11G030400 Carya illinoinensis HOM05D004802 ORTHO05D005591 1.4e-43 179.9 105 84.8
Haze_07452 Corylus avellana HOM05D004802 ORTHO05D005591 2.0e-42 176.0 107 80.4
ClCG06G016810 Citrullus lanatus HOM05D004802 ORTHO05D005591 4.9e-41 171.4 92 90.2
Nitab4.5_0008768g0020 Nicotiana tabacum HOM05D004802 ORTHO05D005591 4.9e-41 171.4 204 51.0
QL10p013461 Quercus lobata HOM05D004802 ORTHO05D005591 6.4e-41 171.0 91 91.2
RcHm_v2.0_Chr3g0484411 Rosa chinensis HOM05D004802 ORTHO05D005591 2.4e-40 169.1 90 90.0
QL03p067058 Quercus lobata HOM05D004802 ORTHO05D005591 5.4e-40 167.9 88 92.0
Cc00_g07690 Coffea canephora HOM05D004802 ORTHO05D005591 1.0e-38 163.7 109 77.1
Nn2g12605 Nelumbo nucifera HOM05D004802 ORTHO05D005591 1.4e-35 153.3 98 78.6
Pp3c17_20320 Physcomitrium patens HOM05D004802 ORTHO05D005591 3.5e-31 138.7 120 57.5
Cc00_g30360 Coffea canephora HOM05D004802 ORTHO05D005591 1.0e-30 137.1 112 62.5
Mapoly0009s0030 Marchantia polymorpha HOM05D004802 ORTHO05D005591 2.3e-30 136.0 108 62.0
Nitab4.5_0000003g0430 Nicotiana tabacum HOM05D004802 ORTHO05D005591 1.2e-28 130.2 145 55.2
CBR_g30055 Chara braunii HOM05D004802 ORTHO05D005591 1.8e-27 126.3 116 57.8
RcHm_v2.0_Chr3g0484341 Rosa chinensis HOM05D004802 ORTHO05D005591 6.4e-25 117.9 63 92.1
Hma1.2p1_0107F.1_g051480 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 2.7e-23 112.5 60 93.3
SMO228G0088 Selaginella moellendorffii HOM05D004802 ORTHO05D005591 7.3e-21 104.4 86 58.1
SHI01132 Sapria himalayana HOM05D004802 ORTHO05D005591 1.6e-20 103.2 89 60.7
AagrBONN_evm.TU.Sc2ySwM_368.3252 Anthoceros agrestis HOM05D004802 ORTHO05D005591 1.4e-19 100.1 103 52.4
Haze_26898 Corylus avellana HOM05D004802 ORTHO05D005591 6.0e-15 84.7 87 49.4
MCO15G004 Micromonas commoda HOM05D004802 ORTHO05D005591 1.0e-14 84.0 139 39.6
A06p04970 Brassica napus HOM05D004802 ORTHO05D005591 2.3e-14 82.8 113 45.1
Pp3c14_16960 Physcomitrium patens HOM05D004802 ORTHO05D005591 2.8e-12 75.9 63 58.7
A09p37440 Brassica napus HOM05D004802 ORTHO05D005591 1.5e-10 70.1 48 72.9
RcHm_v2.0_Chr2g0130991 Rosa chinensis HOM05D004802 ORTHO05D005591 2.6e-10 69.3 64 59.4
CSS0004783 Camellia sinensis var. sinensis HOM05D004802 ORTHO05D005591 3.4e-10 68.9 59 64.4
Haze_07453 Corylus avellana HOM05D004802 ORTHO05D005591 4.9e-09 65.1 35 85.7
Cfa024847 Carpinus fangiana HOM05D004802 ORTHO05D005591 4.2e-08 62.0 90 42.2
BcaC02g11004 Brassica carinata HOM05D004802 ORTHO05D005591 3.5e-07 58.9 43 69.8
C04p22280 Brassica napus HOM05D004802 ORTHO05D020149 3.5e-07 58.9 43 69.8
PRCOL_00002926 Prasinoderma coloniale HOM05D004802 ORTHO05D005591 1.3e-06 57.0 99 41.4
SHI01130 Sapria himalayana HOM05D004802 ORTHO05D005591 1.7e-06 56.6 54 59.3
BolC3t13075H Brassica oleracea HOM05D004802 ORTHO05D005591 6.6e-06 54.7 29 82.8


User provided reference genes

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