Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.22977 Avicennia marina HOM05D007055 ORTHO05D008943 7.8e-72 273.9 155 100.0
Migut.H02189 Erythranthe guttata HOM05D007055 ORTHO05D008943 3.4e-43 178.7 153 67.3
SGA_v2.0_scaffold2G00966 Striga asiatica HOM05D007055 ORTHO05D008943 6.0e-40 167.9 131 70.2
SalBow5G4782 Salvia bowleyana HOM05D000091 ORTHO05D003024 1.6e-37 159.8 140 67.9
CSS0027098 Camellia sinensis var. sinensis HOM05D007055 ORTHO05D008943 2.9e-34 149.1 110 71.8
Oeu002805.1 Olea europaea HOM05D007055 ORTHO05D008943 4.9e-34 148.3 97 80.4
Peaxi162Scf00232g01121 Petunia axillaris HOM05D007055 ORTHO05D008943 2.4e-33 146.0 111 67.6
Rhsim06G0238300 Rhododendron simsii HOM05D007055 ORTHO05D008943 3.5e-32 142.1 111 68.5
Sopen07g034550 Solanum pennellii HOM05D007055 ORTHO05D008943 1.3e-31 140.2 115 62.6
PSO541G2194 Papaver somniferum HOM05D007055 ORTHO05D008943 1.8e-31 139.8 112 59.8
PSO675G8693 Papaver somniferum HOM05D007055 ORTHO05D008943 1.8e-31 139.8 112 59.8
unitig_699.g19681 Utricularia gibba HOM05D007055 ORTHO05D008943 1.8e-31 139.8 112 70.5
PGSC0003DMG400022130 Solanum tuberosum HOM05D007055 ORTHO05D008943 2.3e-31 139.4 111 64.0
Actinidia07345 Actinidia chinensis HOM05D007055 ORTHO05D008943 3.0e-31 139.0 101 71.3
Cfa019436 Carpinus fangiana HOM05D007055 ORTHO05D008943 5.1e-31 138.3 108 65.7
Lj5A202T45 Lonicera japonica HOM05D007055 ORTHO05D008943 5.1e-31 138.3 95 73.7
CiPaw.12G045200 Carya illinoinensis HOM05D007055 ORTHO05D008943 8.7e-31 137.5 109 66.1
DCAR_013747 Daucus carota HOM05D007055 ORTHO05D008943 1.1e-30 137.1 117 64.1
Solyc07g066370.3 Solanum lycopersicum HOM05D007055 ORTHO05D008943 1.1e-30 137.1 115 60.9
Nn7g37868 Nelumbo nucifera HOM05D007055 ORTHO05D008943 1.9e-30 136.3 101 66.3
ECA240G0655 Erigeron canadensis HOM05D007055 ORTHO05D008943 2.5e-30 136.0 108 63.9
PGR031G2131 Punica granatum HOM05D007055 ORTHO05D008943 3.3e-30 135.6 137 55.5
Aqoxy1G01599 Aquilegia oxysepala HOM05D007055 ORTHO05D008943 9.6e-30 134.0 101 66.3
CAN.G943.31 Capsicum annuum HOM05D007055 ORTHO05D008943 4.8e-29 131.7 103 67.0
Atru.chr12.2186 Acer truncatum HOM05D007055 ORTHO05D008943 6.2e-29 131.3 107 63.6
Cc05_g15950 Coffea canephora HOM05D007055 ORTHO05D008943 1.4e-28 130.2 109 63.3
Ciclev10022701m.g Citrus clementina HOM05D007055 ORTHO05D008943 5.3e-28 128.3 105 61.9
Lsat_1_v5_gn_7_72120 Lactuca sativa HOM05D007055 ORTHO05D008943 9.0e-28 127.5 101 64.4
Psat1g002720 Pisum sativum HOM05D007055 ORTHO05D008943 9.0e-28 127.5 128 53.9
Hma1.2p1_0151F.1_g066890 Hydrangea macrophylla HOM05D007055 ORTHO05D008943 1.5e-27 126.7 96 68.8
GSVIVG01020441001 Vitis vinifera HOM05D007055 ORTHO05D008943 1.5e-27 126.7 87 72.4
arahy.Tifrunner.gnm1.ann1.4D1XNM Arachis hypogaea HOM05D007055 ORTHO05D008943 4.5e-27 125.2 106 62.3
HanXRQChr13g0408571 Helianthus annuus HOM05D007055 ORTHO05D008943 4.5e-27 125.2 104 59.6
Lj3g0013500 Lotus japonicus HOM05D007055 ORTHO05D008943 4.5e-27 125.2 127 55.1
Phvul.005G056000 Phaseolus vulgaris HOM05D007055 ORTHO05D008943 5.8e-27 124.8 100 65.0
Thecc.09G245700 Theobroma cacao HOM05D007055 ORTHO05D008943 5.8e-27 124.8 108 61.1
FvH4_3g16000 Fragaria vesca HOM05D007055 ORTHO05D008943 7.6e-27 124.4 118 55.1
FAN11G2295 Fragaria x ananassa HOM05D007055 ORTHO05D008943 7.6e-27 124.4 118 55.1
FAN21G0096 Fragaria x ananassa HOM05D007055 ORTHO05D008943 7.6e-27 124.4 118 55.1
Gohir.A05G073500 Gossypium hirsutum HOM05D007055 ORTHO05D008943 7.6e-27 124.4 106 61.3
Lalb_Chr25g0285111 Lupinus albus HOM05D007055 ORTHO05D008943 7.6e-27 124.4 128 53.1
Gohir.D05G076400 Gossypium hirsutum HOM05D007055 ORTHO05D008943 1.0e-26 124.0 106 61.3
Sc03g0007920 Simmondsia chinensis HOM05D007055 ORTHO05D008943 1.0e-26 124.0 112 58.0
TAR627G0757 Trochodendron aralioides HOM05D007055 ORTHO05D008943 1.0e-26 124.0 94 63.8
FAN21G3903 Fragaria x ananassa HOM05D007055 ORTHO05D008943 1.3e-26 123.6 118 55.1
Ca_03690_v3 Cicer arietinum L. HOM05D007055 ORTHO05D008943 1.7e-26 123.2 128 52.3
CANSAT56G2639 Cannabis sativa HOM05D007055 ORTHO05D008943 2.9e-26 122.5 109 56.9
FAN16G3461 Fragaria x ananassa HOM05D007055 ORTHO05D008943 2.9e-26 122.5 98 62.2
Glyma.08G173000 Glycine max HOM05D007055 ORTHO05D008943 2.9e-26 122.5 141 51.8
Glyma.15G254500 Glycine max HOM05D007055 ORTHO05D008943 2.9e-26 122.5 129 54.3
MBI18_g28200_MAGBIO Magnolia biondii HOM05D007055 ORTHO05D008943 2.9e-26 122.5 97 66.0
RcHm_v2.0_Chr5g0026941 Rosa chinensis HOM05D007055 ORTHO05D008943 3.8e-26 122.1 111 55.9
arahy.Tifrunner.gnm1.ann1.FS1PG6 Arachis hypogaea HOM05D007055 ORTHO05D008943 8.4e-26 120.9 99 64.6
Duzib168G0293 Durio zibethinus HOM05D007055 ORTHO05D008943 8.4e-26 120.9 110 56.4
Medtr2g069750 Medicago truncatula HOM05D007055 ORTHO05D008943 8.4e-26 120.9 120 56.7
Manes.06G171200 Manihot esculenta HOM05D007055 ORTHO05D008943 1.1e-25 120.6 95 63.2
Nitab4.5_0001749g0090 Nicotiana tabacum HOM05D007055 ORTHO05D008943 1.4e-25 120.2 128 53.9
TWI38G0074 Tripterygium wilfordii HOM05D007055 ORTHO05D008943 1.4e-25 120.2 97 62.9
Gorai.009G077700 Gossypium raimondii HOM05D007055 ORTHO05D008943 2.5e-25 119.4 99 62.6
Potri.011G144400 Populus trichocarpa HOM05D007055 ORTHO05D008943 4.2e-25 118.6 124 50.0
Hund02291 Selenicereus undatus HOM05D007055 ORTHO05D008943 4.2e-25 118.6 102 56.9
ATR1098G113 Amborella trichopoda HOM05D007055 ORTHO05D008943 9.3e-25 117.5 101 59.4
COL.COLO4_07385 Corchorus olitorius HOM05D007055 ORTHO05D008943 9.3e-25 117.5 99 61.6
Manes.06G170400 Manihot esculenta HOM05D007055 ORTHO05D008943 9.3e-25 117.5 95 62.1
Sabra11G0128800 Salix brachista HOM05D007055 ORTHO05D008943 9.3e-25 117.5 95 61.1
SalBow5G1530 Salvia bowleyana HOM05D000091 ORTHO05D003024 9.3e-25 117.5 114 64.0
Thhalv10019307m.g Eutrema salsugineum HOM05D007055 ORTHO05D008943 2.1e-24 116.3 103 60.2
Potri.008G043200 Populus trichocarpa HOM05D007055 ORTHO05D008943 2.1e-24 116.3 116 52.6
Sed0014529 Sechium edule HOM05D007055 ORTHO05D008943 2.1e-24 116.3 137 47.4
ClCG11G016330 Citrullus lanatus HOM05D007055 ORTHO05D008943 4.6e-24 115.2 108 54.6
EL10Ac4g08563 Beta vulgaris HOM05D007055 ORTHO05D008943 7.9e-24 114.4 92 60.9
MELO3C010559.2 Cucumis melo HOM05D007055 ORTHO05D008943 7.9e-24 114.4 108 52.8
CARHR072740 Cardamine hirsuta HOM05D007055 ORTHO05D008943 1.0e-23 114.0 104 59.6
Aa31LG4G1920 Aethionema arabicum HOM05D007055 ORTHO05D008943 1.8e-23 113.2 90 65.6
Ah.06g187070 Amaranthus hybridus HOM05D007055 ORTHO05D008943 1.8e-23 113.2 91 60.4
MD05G1216100 Malus domestica HOM05D007055 ORTHO05D008943 3.0e-23 112.5 96 61.5
AL2G39530 Arabidopsis lyrata HOM05D007055 ORTHO05D008943 3.9e-23 112.1 144 45.8
CsaV3_4G031800 Cucumis sativus L. HOM05D007055 ORTHO05D008943 3.9e-23 112.1 108 51.9
HPP92_002254 Vanilla planifolia HOM05D007055 ORTHO05D008943 3.9e-23 112.1 78 70.5
AT1G79070 Arabidopsis thaliana HOM05D007055 ORTHO05D008943 1.5e-22 110.2 141 45.4
THA.LOC104808116 Tarenaya hassleriana HOM05D007055 ORTHO05D008943 1.9e-22 109.8 141 46.1
Sp5g34120 Schrenkiella parvula HOM05D007055 ORTHO05D008943 3.3e-22 109.0 114 56.1
BcaB02g08664 Brassica carinata HOM05D007055 ORTHO05D008943 4.3e-22 108.6 106 52.8
Eucgr.F03184 Eucalyptus grandis HOM05D007055 ORTHO05D008943 5.7e-22 108.2 94 59.6
AUR62044625 Chenopodium quinoa HOM05D007055 ORTHO05D008943 7.4e-22 107.8 84 60.7
BolC6t40312H Brassica oleracea HOM05D007055 ORTHO05D008943 1.6e-21 106.7 103 53.4
Manes.06G170801 Manihot esculenta HOM05D007055 ORTHO05D008943 1.6e-21 106.7 100 56.0
C06p52940 Brassica napus HOM05D007055 ORTHO05D008943 3.7e-21 105.5 90 61.1
Os08g0129900 Oryza sativa ssp. japonica HOM05D007055 ORTHO05D008943 3.7e-21 105.5 96 55.2
BcaC08g47470 Brassica carinata HOM05D007055 ORTHO05D008943 4.8e-21 105.1 103 52.4
A07p44210 Brassica napus HOM05D007055 ORTHO05D008943 6.2e-21 104.8 103 52.4
Duzib150G0143 Durio zibethinus HOM05D007055 ORTHO05D008943 8.2e-21 104.4 84 63.1
Manes.06G169900 Manihot esculenta HOM05D007055 ORTHO05D008943 1.1e-20 104.0 95 56.8
BraA07t31929Z Brassica rapa HOM05D007055 ORTHO05D008943 1.4e-20 103.6 90 60.0
BcaNung04909 Brassica carinata HOM05D007055 ORTHO05D008943 2.4e-20 102.8 92 58.7
Prupe.4G143100 Prunus persica HOM05D007055 ORTHO05D008943 2.4e-20 102.8 95 54.7
CDE12G0729 Ceratophyllum demersum HOM05D007055 ORTHO05D008943 9.0e-20 100.9 102 50.0
Carub.0002s2594 Capsella rubella HOM05D007055 ORTHO05D008943 2.0e-19 99.8 126 48.4
Zm00001eb173230 Zea mays HOM05D007055 ORTHO05D008943 2.9e-18 95.9 99 46.5
AUR62043058 Chenopodium quinoa HOM05D007055 ORTHO05D008943 8.4e-18 94.4 133 40.6
Manes.06G170100 Manihot esculenta HOM05D007055 ORTHO05D008943 3.2e-17 92.4 89 50.6
Nitab4.5_0007742g0030 Nicotiana tabacum HOM05D007055 ORTHO05D008943 4.2e-17 92.0 87 58.6
CBR_g41533 Chara braunii HOM05D000019 ORTHO05D000048 9.3e-17 90.9 105 42.9
Pp3c15_3290 Physcomitrium patens HOM05D007055 ORTHO05D008943 3.5e-16 89.0 128 41.4
SHI01886 Sapria himalayana HOM05D007055 ORTHO05D008943 4.6e-16 88.6 96 47.9
BcaC08g45387 Brassica carinata HOM05D007055 ORTHO05D008943 3.0e-15 85.9 94 52.1
Manes.06G171100 Manihot esculenta HOM05D007055 ORTHO05D008943 3.0e-15 85.9 98 52.0
Mapoly0112s0058 Marchantia polymorpha HOM05D007055 ORTHO05D008943 4.3e-14 82.0 89 44.9
vmacro11656 Vaccinium macrocarpon HOM05D007055 ORTHO05D008943 9.7e-14 80.9 78 56.4
AagrBONN_evm.TU.Sc2ySwM_228.2782 Anthoceros agrestis HOM05D007055 ORTHO05D008943 1.6e-13 80.1 96 39.6
TPR.G9749 Trifolium pratense HOM05D007055 ORTHO05D008943 2.8e-13 79.3 61 63.9
SMO367G1177 Selaginella moellendorffii HOM05D007055 ORTHO05D008943 3.1e-12 75.9 120 37.5


User provided reference genes

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