Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.22939 Avicennia marina HOM05D002209 ORTHO05D007926 2.6e-141 505.4 253 100.0
Migut.L01913 Erythranthe guttata HOM05D002209 ORTHO05D007926 2.1e-114 416.0 253 82.6
SGA_v2.0_scaffold21G09613 Striga asiatica HOM05D002209 ORTHO05D007926 2.1e-114 416.0 253 81.8
SalBow5G1692 Salvia bowleyana HOM05D002209 ORTHO05D007926 2.4e-110 402.5 238 85.3
Nitab4.5_0000150g0080 Nicotiana tabacum HOM05D002209 ORTHO05D007926 4.9e-108 394.8 247 79.4
Nitab4.5_0012369g0010 Nicotiana tabacum HOM05D002209 ORTHO05D007926 4.2e-107 391.7 253 78.3
Peaxi162Scf00683g10026 Petunia axillaris HOM05D002209 ORTHO05D007926 7.1e-107 391.0 253 79.1
Sopen00g010550 Solanum pennellii HOM05D002209 ORTHO05D007926 3.5e-106 388.7 253 78.3
PGSC0003DMG400005659 Solanum tuberosum HOM05D002209 ORTHO05D007926 3.5e-106 388.7 253 78.7
CSS0012934 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D007926 2.0e-101 372.9 258 74.0
CSS0018698 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D007926 2.0e-101 372.9 258 74.0
CAN.G1129.32 Capsicum annuum HOM05D002209 ORTHO05D007926 2.0e-101 372.9 254 76.4
Nitab4.5_0001158g0030 Nicotiana tabacum HOM05D002209 ORTHO05D007926 7.6e-101 370.9 236 79.7
Actinidia18911 Actinidia chinensis HOM05D002209 ORTHO05D007926 8.4e-100 367.5 247 75.3
Hma1.2p1_1257F.1_g270850 Hydrangea macrophylla HOM05D002209 ORTHO05D007926 1.4e-99 366.7 251 76.1
Solyc03g119010.3 Solanum lycopersicum HOM05D002209 ORTHO05D007926 2.1e-98 362.8 236 79.2
Rhsim12G0139900 Rhododendron simsii HOM05D002209 ORTHO05D007926 6.0e-98 361.3 239 76.2
Actinidia35109 Actinidia chinensis HOM05D002209 ORTHO05D007926 7.9e-98 360.9 247 73.7
unitig_27.g24963 Utricularia gibba HOM05D002209 ORTHO05D007926 1.3e-97 360.1 239 77.0
Atru.chr9.948 Acer truncatum HOM05D002209 ORTHO05D007926 2.3e-97 359.4 243 74.5
Sc10g0009340 Simmondsia chinensis HOM05D002209 ORTHO05D007926 2.3e-97 359.4 241 73.9
TAR622G1089 Trochodendron aralioides HOM05D002209 ORTHO05D007926 8.2e-95 350.9 247 73.7
Ciclev10009263m.g Citrus clementina HOM05D002209 ORTHO05D007926 1.8e-94 349.7 245 71.4
Manes.14G168500 Manihot esculenta HOM05D002209 ORTHO05D007926 6.9e-94 347.8 254 70.9
Lalb_Chr09g0330531 Lupinus albus HOM05D002209 ORTHO05D007926 9.0e-94 347.4 236 69.5
Lsat_1_v5_gn_3_114081 Lactuca sativa HOM05D002209 ORTHO05D007926 1.2e-93 347.1 246 70.7
CsaV3_1G007020 Cucumis sativus L. HOM05D002209 ORTHO05D007926 2.6e-93 345.9 241 71.4
PGR083G0394 Punica granatum HOM05D002209 ORTHO05D007926 5.9e-93 344.7 242 71.9
Cfa019698 Carpinus fangiana HOM05D002209 ORTHO05D007926 1.3e-92 343.6 247 69.6
ClCG04G010780 Citrullus lanatus HOM05D002209 ORTHO05D007926 1.3e-92 343.6 241 71.0
MELO3C002120.2 Cucumis melo HOM05D002209 ORTHO05D007926 1.3e-92 343.6 241 71.0
Ah.11g045280 Amaranthus hybridus HOM05D002209 ORTHO05D007926 1.7e-92 343.2 248 70.6
ECA240G0871 Erigeron canadensis HOM05D002209 ORTHO05D007926 5.0e-92 341.7 236 72.5
Medtr8g106740 Medicago truncatula HOM05D002209 ORTHO05D007926 5.0e-92 341.7 246 69.1
Thecc.06G020700 Theobroma cacao HOM05D002209 ORTHO05D007926 8.5e-92 340.9 245 70.2
Phvul.002G327300 Phaseolus vulgaris HOM05D002209 ORTHO05D007926 1.9e-91 339.7 253 68.0
Duzib160G0876 Durio zibethinus HOM05D002209 ORTHO05D007926 2.5e-91 339.3 247 69.6
EL10Ac5g11521 Beta vulgaris HOM05D002209 ORTHO05D007926 3.2e-91 339.0 255 68.6
Lj4g0023570 Lotus japonicus HOM05D002209 ORTHO05D007926 4.2e-91 338.6 247 68.0
VMungo0251G3506 Vigna mungo HOM05D002209 ORTHO05D007926 5.5e-91 338.2 251 68.1
Sabra15G0055300 Salix brachista HOM05D002209 ORTHO05D007926 1.2e-90 337.0 254 68.5
Potri.015G041800 Populus trichocarpa HOM05D002209 ORTHO05D007926 2.1e-90 336.3 254 67.3
Aqoxy3G00431 Aquilegia oxysepala HOM05D002209 ORTHO05D007926 2.7e-90 335.9 251 68.5
Gohir.D06G123100 Gossypium hirsutum HOM05D002209 ORTHO05D007926 4.6e-90 335.1 246 69.9
PSO478G0876 Papaver somniferum HOM05D002209 ORTHO05D007926 7.9e-90 334.3 237 72.2
Gorai.010G143200 Gossypium raimondii HOM05D002209 ORTHO05D007926 1.0e-89 334.0 246 69.5
PSO017G1461 Papaver somniferum HOM05D002209 ORTHO05D007926 1.3e-89 333.6 237 72.2
Glyma.08G051400 Glycine max HOM05D002209 ORTHO05D007926 8.7e-89 330.9 248 67.3
Glyma.05G243600 Glycine max HOM05D002209 ORTHO05D007926 1.1e-88 330.5 243 68.3
Sed0021446 Sechium edule HOM05D002209 ORTHO05D007926 1.5e-88 330.1 250 67.6
Gohir.A06G114800 Gossypium hirsutum HOM05D002209 ORTHO05D007926 5.7e-88 328.2 246 69.1
arahy.Tifrunner.gnm1.ann1.X5TZ4V Arachis hypogaea HOM05D002209 ORTHO05D007926 2.2e-87 326.2 240 67.5
CiPaw.15G139100 Carya illinoinensis HOM05D002209 ORTHO05D007926 2.8e-87 325.9 244 67.6
TWI81G0293 Tripterygium wilfordii HOM05D002209 ORTHO05D007926 2.8e-87 325.9 250 67.6
arahy.Tifrunner.gnm1.ann1.A2QZNW Arachis hypogaea HOM05D002209 ORTHO05D007926 6.3e-87 324.7 240 67.1
arahy.Tifrunner.gnm1.ann1.IWL1UH Arachis hypogaea HOM05D002209 ORTHO05D007926 1.1e-86 323.9 245 66.1
Eucgr.B00853 Eucalyptus grandis HOM05D002209 ORTHO05D007926 1.1e-86 323.9 242 66.5
arahy.Tifrunner.gnm1.ann1.7LX2IS Arachis hypogaea HOM05D002209 ORTHO05D007926 2.4e-86 322.8 245 65.7
MBI13_g00575_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D007926 3.1e-86 322.4 238 70.2
QL10p027511 Quercus lobata HOM05D002209 ORTHO05D007926 4.1e-86 322.0 257 66.1
CDE08G0043 Ceratophyllum demersum HOM05D002209 ORTHO05D007926 6.9e-86 321.2 240 68.8
TPR.G12761 Trifolium pratense HOM05D002209 ORTHO05D007926 6.9e-86 321.2 246 65.9
CANSAT80G1708 Cannabis sativa HOM05D002209 ORTHO05D007926 2.0e-85 319.7 250 66.0
CANSAT80G2078 Cannabis sativa HOM05D002209 ORTHO05D007926 2.0e-85 319.7 250 66.0
Sabra15G0061600 Salix brachista HOM05D002209 ORTHO05D007926 2.6e-85 319.3 289 60.2
Carub.0003s1789 Capsella rubella HOM05D002209 ORTHO05D007926 8.5e-84 314.3 249 65.1
AT3G18165 Arabidopsis thaliana HOM05D002209 ORTHO05D007926 1.4e-83 313.5 249 65.1
vmacro16426 Vaccinium macrocarpon HOM05D002209 ORTHO05D007926 3.2e-83 312.4 321 54.8
Cc04_g06640 Coffea canephora HOM05D002209 ORTHO05D007926 4.2e-83 312.0 196 78.1
CARHR093490 Cardamine hirsuta HOM05D002209 ORTHO05D007926 5.5e-83 311.6 249 64.3
BcaB04g20790 Brassica carinata HOM05D002209 ORTHO05D007926 7.2e-83 311.2 248 63.7
THA.LOC104820370 Tarenaya hassleriana HOM05D002209 ORTHO05D007926 7.2e-83 311.2 250 65.2
Thhalv10021375m.g Eutrema salsugineum HOM05D002209 ORTHO05D007926 1.6e-82 310.1 249 63.5
HanXRQChr03g0090991 Helianthus annuus HOM05D002209 ORTHO05D007926 1.6e-82 310.1 234 68.4
AL3G31340 Arabidopsis lyrata HOM05D002209 ORTHO05D007926 2.7e-82 309.3 249 64.3
Prupe.5G229800 Prunus persica HOM05D002209 ORTHO05D007926 3.6e-82 308.9 246 64.6
AUR62033751 Chenopodium quinoa HOM05D002209 ORTHO05D007926 6.1e-82 308.1 258 64.7
BcaC05g28661 Brassica carinata HOM05D002209 ORTHO05D007926 1.4e-81 307.0 249 63.1
BolC5t33504H Brassica oleracea HOM05D002209 ORTHO05D007926 1.4e-81 307.0 249 63.1
DCAR_011381 Daucus carota HOM05D002209 ORTHO05D007926 1.4e-81 307.0 241 65.6
BcaC09g48772 Brassica carinata HOM05D002209 ORTHO05D007926 1.8e-81 306.6 249 63.1
BolC1t04568H Brassica oleracea HOM05D002209 ORTHO05D007926 1.8e-81 306.6 249 63.1
HPP92_026682 Vanilla planifolia HOM05D002209 ORTHO05D007926 1.8e-81 306.6 235 65.5
Sp3g16280 Schrenkiella parvula HOM05D002209 ORTHO05D007926 2.3e-81 306.2 249 63.1
C05p47920 Brassica napus HOM05D002209 ORTHO05D007926 3.0e-81 305.8 249 62.7
BraA05t21994Z Brassica rapa HOM05D002209 ORTHO05D007926 3.0e-81 305.8 249 63.1
A05p31590 Brassica napus HOM05D002209 ORTHO05D007926 3.9e-81 305.4 249 63.1
C01p46070 Brassica napus HOM05D002209 ORTHO05D007926 8.8e-81 304.3 249 62.2
MD00G1160500 Malus domestica HOM05D002209 ORTHO05D007926 1.1e-80 303.9 251 61.8
GSVIVG01008385001 Vitis vinifera HOM05D002209 ORTHO05D007926 1.5e-80 303.5 197 74.6
Nn2g14536 Nelumbo nucifera HOM05D002209 ORTHO05D007926 2.0e-80 303.1 230 67.8
A01p36240 Brassica napus HOM05D002209 ORTHO05D007926 2.6e-80 302.8 249 61.8
BraA01t03699Z Brassica rapa HOM05D002209 ORTHO05D007926 2.6e-80 302.8 249 61.8
Lalb_Chr16g0387151 Lupinus albus HOM05D002209 ORTHO05D007926 3.3e-80 302.4 218 68.8
Hund02335 Selenicereus undatus HOM05D002209 ORTHO05D007926 7.4e-80 301.2 251 64.5
Aa31LG8G4990 Aethionema arabicum HOM05D002209 ORTHO05D004761 2.6e-77 292.7 237 65.0
Ca_14628_v3 Cicer arietinum L. HOM05D002209 ORTHO05D007926 3.4e-77 292.4 247 61.5
MD14G1233600 Malus domestica HOM05D002209 ORTHO05D007926 1.9e-75 286.6 234 62.8
Zm00001eb128260 Zea mays HOM05D002209 ORTHO05D007926 5.5e-75 285.0 237 60.3
ATR0068G069 Amborella trichopoda HOM05D002209 ORTHO05D007926 2.7e-74 282.7 226 63.3
RcHm_v2.0_Chr7g0178821 Rosa chinensis HOM05D002209 ORTHO05D007926 2.6e-72 276.2 249 61.4
Ca_17220_v3 Cicer arietinum L. HOM05D002209 ORTHO05D004761 3.3e-72 275.8 248 59.3
Lj9A422G65 Lonicera japonica HOM05D002209 ORTHO05D007926 5.7e-72 275.0 209 71.3
Oeu014368.1 Olea europaea HOM05D002209 ORTHO05D007926 7.4e-72 274.6 171 79.5
FvH4_5g17030 Fragaria vesca HOM05D002209 ORTHO05D007926 2.0e-69 266.5 250 61.2
FAN13G0553 Fragaria x ananassa HOM05D002209 ORTHO05D007926 1.3e-68 263.8 250 60.4
FAN08G0602 Fragaria x ananassa HOM05D002209 ORTHO05D007926 2.9e-68 262.7 247 59.9
FAN18G2854 Fragaria x ananassa HOM05D002209 ORTHO05D007926 3.8e-68 262.3 242 61.6
Pp3c9_17380 Physcomitrium patens HOM05D002209 ORTHO05D007926 5.2e-65 251.9 240 52.9
Dinv13547 Davidia involucrata HOM05D002209 ORTHO05D007926 1.2e-64 250.8 258 54.7
COL.COLO4_07530 Corchorus olitorius HOM05D002209 ORTHO05D007926 3.3e-64 249.2 185 68.1
Mapoly0110s0002 Marchantia polymorpha HOM05D002209 ORTHO05D007926 1.1e-62 244.2 235 52.3
AagrBONN_evm.TU.Sc2ySwM_344.2039 Anthoceros agrestis HOM05D002209 ORTHO05D007926 5.5e-59 231.9 228 51.3
AUR62029954 Chenopodium quinoa HOM05D002209 ORTHO05D007926 3.6e-58 229.2 191 65.4
HPP92_018005 Vanilla planifolia HOM05D002209 ORTHO05D007926 5.5e-51 205.3 175 58.3
Haze_18790 Corylus avellana HOM05D002209 ORTHO05D004761 7.2e-51 204.9 189 59.3
Hma1.2p1_1257F.1_g270860 Hydrangea macrophylla HOM05D002209 ORTHO05D007926 1.4e-49 200.7 136 77.2
CBR_g46893 Chara braunii HOM05D006221 ORTHO05D007759 1.8e-49 200.3 230 47.4
SMO339G0064 Selaginella moellendorffii HOM05D002209 ORTHO05D007926 1.5e-48 197.2 225 43.6
Psat7g003920 Pisum sativum HOM05D002209 ORTHO05D007926 9.2e-46 188.0 132 69.7
SEGI_33728 Sequoiadendron giganteum HOM05D002209 ORTHO05D007926 7.0e-38 161.8 131 61.8
Cre17.g697350 Chlamydomonas reinhardtii HOM05D002209 ORTHO05D007926 2.2e-31 140.2 222 36.0
MCO11G869 Micromonas commoda HOM05D002209 ORTHO05D007926 2.2e-31 140.2 226 35.4
Ca_17308_v3 Cicer arietinum L. HOM05D002209 ORTHO05D007926 2.6e-24 116.7 87 67.8
Psat7g003960 Pisum sativum HOM05D002209 ORTHO05D007926 2.6e-24 116.7 81 70.4
C05p44850 Brassica napus HOM05D002209 ORTHO05D007926 9.2e-22 108.2 79 64.6
BolC5t33212H Brassica oleracea HOM05D002209 ORTHO05D007926 9.2e-22 108.2 79 64.6
AUR62029953 Chenopodium quinoa HOM05D002209 ORTHO05D007926 1.3e-20 104.4 86 58.1
A10p11050 Brassica napus HOM05D002209 ORTHO05D033214 9.9e-16 88.2 60 68.3
Ca_29797_v3 Cicer arietinum L. HOM05D002209 ORTHO05D007926 1.3e-15 87.8 66 69.7
BraA10t43197Z Brassica rapa HOM05D002209 ORTHO05D033214 1.5e-08 64.3 47 63.8
BolC6t38528H Brassica oleracea HOM05D002209 ORTHO05D033214 5.8e-08 62.4 45 62.2
Pp3c15_21980 Physcomitrium patens HOM05D002209 ORTHO05D312687 1.4e-06 57.8 38 68.4


User provided reference genes

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