Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.22849 Avicennia marina HOM05D003971 ORTHO05D004762 0.0e+00 1116.7 597 100.0
Migut.I00618 Erythranthe guttata HOM05D003971 ORTHO05D004762 3.7e-231 805.1 600 73.5
Peaxi162Scf01168g00013 Petunia axillaris HOM05D003971 ORTHO05D004762 1.8e-196 689.9 574 62.7
CSS0040569 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 5.1e-196 688.3 602 62.0
Solyc12g042200.2 Solanum lycopersicum HOM05D003971 ORTHO05D004762 8.7e-196 687.6 569 62.4
Sopen12g021240 Solanum pennellii HOM05D003971 ORTHO05D004762 9.6e-195 684.1 571 62.2
Nitab4.5_0008403g0010 Nicotiana tabacum HOM05D003971 ORTHO05D004762 2.6e-192 676.0 599 60.4
Nitab4.5_0002584g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 1.1e-190 670.6 599 60.3
Lsat_1_v5_gn_5_10121 Lactuca sativa HOM05D003971 ORTHO05D004762 1.6e-189 666.8 568 62.0
ECA246G0638 Erigeron canadensis HOM05D003971 ORTHO05D004762 7.9e-189 664.5 552 63.2
HanXRQChr05g0155401 Helianthus annuus HOM05D003971 ORTHO05D004762 3.0e-188 662.5 554 62.5
Lj9C486T6 Lonicera japonica HOM05D003971 ORTHO05D004762 1.9e-187 659.8 600 60.2
Cfa018707 Carpinus fangiana HOM05D003971 ORTHO05D004762 6.2e-186 654.8 548 62.4
TAR622G0096 Trochodendron aralioides HOM05D003971 ORTHO05D004762 2.4e-185 652.9 595 58.3
Cpa.g.sc13.168 Carica papaya HOM05D003971 ORTHO05D004762 1.2e-184 650.6 552 61.2
Cc04_g05880 Coffea canephora HOM05D003971 ORTHO05D004762 1.2e-184 650.6 598 60.0
Atru.chr6.1916 Acer truncatum HOM05D003971 ORTHO05D004762 2.6e-184 649.4 551 63.2
Glyma.06G163900 Glycine max HOM05D003971 ORTHO05D004762 1.7e-183 646.7 569 59.4
Aqoxy1G00170 Aquilegia oxysepala HOM05D003971 ORTHO05D004762 1.9e-182 643.3 595 57.5
GSVIVG01008647001 Vitis vinifera HOM05D003971 ORTHO05D004762 2.5e-182 642.9 589 58.1
Actinidia18301 Actinidia chinensis HOM05D003971 ORTHO05D004762 4.2e-182 642.1 599 60.8
arahy.Tifrunner.gnm1.ann1.9UH1TF Arachis hypogaea HOM05D003971 ORTHO05D004762 5.5e-182 641.7 555 60.4
Lj5C87G6 Lonicera japonica HOM05D003971 ORTHO05D004762 5.5e-182 641.7 530 64.7
Phvul.009G161300 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 7.1e-182 641.3 571 58.3
Oeu046606.1 Olea europaea HOM05D003971 ORTHO05D004762 1.3e-180 637.1 513 65.9
Ciclev10031176m.g Citrus clementina HOM05D003971 ORTHO05D004762 1.8e-180 636.7 554 60.5
Lalb_Chr11g0069181 Lupinus albus HOM05D003971 ORTHO05D004762 6.7e-180 634.8 557 59.2
CiPaw.11G001000 Carya illinoinensis HOM05D003971 ORTHO05D004762 8.7e-180 634.4 515 64.5
Nn4g22021 Nelumbo nucifera HOM05D003971 ORTHO05D004762 1.1e-179 634.0 590 57.1
arahy.Tifrunner.gnm1.ann1.86AC6C Arachis hypogaea HOM05D003971 ORTHO05D004762 2.5e-179 632.9 575 58.3
CANSAT56G1634 Cannabis sativa HOM05D003971 ORTHO05D004762 2.5e-179 632.9 554 61.0
Duzib084G0567 Durio zibethinus HOM05D003971 ORTHO05D004762 5.7e-179 631.7 555 60.2
vmacro19182 Vaccinium macrocarpon HOM05D003971 ORTHO05D004762 4.8e-178 628.6 565 61.6
PSO384G2792 Papaver somniferum HOM05D003971 ORTHO05D004762 1.4e-177 627.1 595 56.1
Lj1g0015188 Lotus japonicus HOM05D003971 ORTHO05D004762 1.2e-176 624.0 556 59.4
QL10p000509 Quercus lobata HOM05D003971 ORTHO05D004762 1.2e-176 624.0 637 54.6
MD06G1130900 Malus domestica HOM05D003971 ORTHO05D004762 2.6e-176 622.9 592 57.6
Medtr3g098600 Medicago truncatula HOM05D003971 ORTHO05D004762 2.6e-176 622.9 552 59.4
Thecc.03G140300 Theobroma cacao HOM05D003971 ORTHO05D004762 5.9e-176 621.7 549 59.4
DCAR_021401 Daucus carota HOM05D003971 ORTHO05D004762 1.3e-175 620.5 564 57.6
Gohir.D03G110400 Gossypium hirsutum HOM05D003971 ORTHO05D004762 1.3e-175 620.5 549 59.4
TWI39G0398 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 2.2e-175 619.8 593 59.0
Psat5g055040 Pisum sativum HOM05D003971 ORTHO05D004762 3.8e-175 619.0 565 59.8
Hund02509 Selenicereus undatus HOM05D003971 ORTHO05D004762 6.5e-175 618.2 596 55.7
Gohir.A03G056200 Gossypium hirsutum HOM05D003971 ORTHO05D004762 8.5e-175 617.8 590 56.3
Potri.012G108100 Populus trichocarpa HOM05D003971 ORTHO05D004762 3.2e-174 615.9 584 57.0
PSO339G4968 Papaver somniferum HOM05D003971 ORTHO05D004762 4.2e-174 615.5 597 56.1
Prupe.5G142100 Prunus persica HOM05D003971 ORTHO05D004762 9.3e-174 614.4 590 59.2
MD14G1147500 Malus domestica HOM05D003971 ORTHO05D004762 2.1e-173 613.2 552 58.7
MELO3C002386.2 Cucumis melo HOM05D003971 ORTHO05D004762 3.6e-173 612.5 562 57.7
Gorai.003G116700 Gossypium raimondii HOM05D003971 ORTHO05D004762 7.9e-173 611.3 582 56.7
CsaV3_1G009920 Cucumis sativus L. HOM05D003971 ORTHO05D004762 2.3e-172 609.8 561 57.6
PGSC0003DMG400014242 Solanum tuberosum HOM05D003971 ORTHO05D004762 6.7e-172 608.2 561 57.0
Sed0008211 Sechium edule HOM05D003971 ORTHO05D004762 1.1e-171 607.4 560 58.6
Rhsim08G0197300 Rhododendron simsii HOM05D003971 ORTHO05D004762 7.4e-171 604.7 649 56.2
Sabra12G0079300 Salix brachista HOM05D003971 ORTHO05D004762 7.4e-171 604.7 618 53.9
Hund10040 Selenicereus undatus HOM05D003971 ORTHO05D004762 6.3e-170 601.7 595 54.5
Sopen03g037130 Solanum pennellii HOM05D003971 ORTHO05D004762 6.9e-169 598.2 559 56.9
EL10Ac5g11286 Beta vulgaris HOM05D003971 ORTHO05D004762 9.1e-169 597.8 632 54.6
Ca_10878_v3 Cicer arietinum L. HOM05D003971 ORTHO05D004762 9.1e-169 597.8 444 66.2
FvH4_5g09480 Fragaria vesca HOM05D003971 ORTHO05D004762 5.9e-168 595.1 565 57.2
PGR083G2644 Punica granatum HOM05D003971 ORTHO05D004762 5.9e-168 595.1 555 56.8
ClCG03G004040 Citrullus lanatus HOM05D003971 ORTHO05D004762 2.9e-167 592.8 575 56.5
FAN18G1571 Fragaria x ananassa HOM05D003971 ORTHO05D004762 6.5e-167 591.7 565 56.8
FAN13G1049 Fragaria x ananassa HOM05D003971 ORTHO05D004762 7.2e-166 588.2 565 56.5
DCAR_016341 Daucus carota HOM05D003971 ORTHO05D004762 4.7e-165 585.5 519 59.7
FAN04G0277 Fragaria x ananassa HOM05D003971 ORTHO05D004762 1.4e-164 583.9 567 56.8
Glyma.04G201300 Glycine max HOM05D003971 ORTHO05D004762 3.9e-164 582.4 569 55.0
MBI07_g41261_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 3.9e-164 582.4 557 56.9
Sabra15G0126400 Salix brachista HOM05D003971 ORTHO05D004762 3.9e-164 582.4 625 51.5
Gohir.D07G051000 Gossypium hirsutum HOM05D003971 ORTHO05D004762 3.3e-163 579.3 556 56.5
TWI23G0486 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 5.7e-163 578.6 594 53.5
RcHm_v2.0_Chr7g0188721 Rosa chinensis HOM05D003971 ORTHO05D004762 7.4e-163 578.2 575 55.8
Gohir.A07G046700 Gossypium hirsutum HOM05D003971 ORTHO05D004762 1.7e-162 577.0 556 55.0
AUR62009537 Chenopodium quinoa HOM05D003971 ORTHO05D004762 2.2e-162 576.6 591 54.5
THA.LOC104825039 Tarenaya hassleriana HOM05D003971 ORTHO05D004762 2.8e-162 576.2 588 53.6
Gorai.001G054100 Gossypium raimondii HOM05D003971 ORTHO05D004762 3.7e-162 575.9 556 56.1
AUR62041703 Chenopodium quinoa HOM05D003971 ORTHO05D004762 4.8e-162 575.5 472 60.2
AUR62041701 Chenopodium quinoa HOM05D003971 ORTHO05D004762 4.1e-161 572.4 365 72.6
Lsat_1_v5_gn_4_84501 Lactuca sativa HOM05D003971 ORTHO05D004762 4.7e-157 558.9 559 53.7
Thhalv10013209m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 1.8e-156 557.0 555 53.9
Eucgr.K00065 Eucalyptus grandis HOM05D003971 ORTHO05D004762 2.3e-156 556.6 548 54.2
Sc22g0003380 Simmondsia chinensis HOM05D003971 ORTHO05D004762 2.3e-156 556.6 589 51.4
Sp6g13140 Schrenkiella parvula HOM05D003971 ORTHO05D004762 3.0e-156 556.2 550 54.0
ClCG06G018370 Citrullus lanatus HOM05D003971 ORTHO05D004762 3.9e-156 555.8 552 54.7
Peaxi162Scf00314g00638 Petunia axillaris HOM05D003971 ORTHO05D004762 8.8e-156 554.7 561 53.7
Haze_07098 Corylus avellana HOM05D003971 ORTHO05D004762 2.0e-155 553.5 631 51.3
AT5G50970 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 2.6e-155 553.1 550 54.0
Manes.06G126801 Manihot esculenta HOM05D003971 ORTHO05D004762 9.7e-155 551.2 554 56.3
CsaV3_1G000070 Cucumis sativus L. HOM05D003971 ORTHO05D004762 2.2e-154 550.1 554 52.7
Carub.0008s1099 Capsella rubella HOM05D003971 ORTHO05D004762 2.8e-154 549.7 551 53.4
C03p19320 Brassica napus HOM05D003971 ORTHO05D004762 5.3e-153 545.4 549 53.4
AL8G25160 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 9.1e-153 544.7 560 53.2
BolC3t14318H Brassica oleracea HOM05D003971 ORTHO05D004762 9.1e-153 544.7 549 53.2
Sed0022051 Sechium edule HOM05D003971 ORTHO05D004762 9.1e-153 544.7 562 52.5
BraA03t10933Z Brassica rapa HOM05D003971 ORTHO05D004762 1.2e-152 544.3 560 52.5
unitig_21.g20335 Utricularia gibba HOM05D003971 ORTHO05D004762 5.9e-152 542.0 553 52.4
CARHR257220 Cardamine hirsuta HOM05D003971 ORTHO05D004762 2.2e-151 540.0 571 51.8
FAN08G0744 Fragaria x ananassa HOM05D003971 ORTHO05D004762 2.2e-151 540.0 509 56.4
MELO3C026159.2 Cucumis melo HOM05D003971 ORTHO05D004762 1.1e-150 537.7 397 64.5
A03p16430 Brassica napus HOM05D003971 ORTHO05D004762 4.2e-150 535.8 551 52.6
ATR0582G269 Amborella trichopoda HOM05D003971 ORTHO05D004762 4.7e-149 532.3 460 58.7
MBI03_g13042_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 9.7e-147 524.6 371 66.8
VMungo0251G1950 Vigna mungo HOM05D000512 ORTHO05D000861 9.7e-147 524.6 553 52.3
Lj4g0027413 Lotus japonicus HOM05D003971 ORTHO05D004762 4.8e-146 522.3 556 51.1
BcaC01g06062 Brassica carinata HOM05D003971 ORTHO05D004762 3.2e-142 509.6 549 50.8
Phvul.002G281600 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 4.7e-141 505.8 560 50.7
Medtr8g100180 Medicago truncatula HOM05D003971 ORTHO05D004762 8.3e-138 495.0 464 54.5
TPR.G12938 Trifolium pratense HOM05D003971 ORTHO05D004762 1.6e-136 490.7 461 52.3
VMungo1309G0830 Vigna mungo HOM05D003971 ORTHO05D004762 3.5e-136 489.6 299 73.9
SHI34430 Sapria himalayana HOM05D003971 ORTHO05D004762 8.6e-135 485.0 446 54.7
Nitab4.5_0000976g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 2.5e-134 483.4 484 55.0
SEGI_34710 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 2.5e-134 483.4 315 70.5
TPR.G25960 Trifolium pratense HOM05D003971 ORTHO05D004762 1.6e-133 480.7 560 50.0
Zm00001eb064630 Zea mays HOM05D003971 ORTHO05D004762 4.7e-133 479.2 351 65.2
HPP92_028338 Vanilla planifolia HOM05D003971 ORTHO05D004762 1.4e-132 477.6 562 48.0
Zm00001eb210690 Zea mays HOM05D003971 ORTHO05D004762 5.7e-131 472.2 590 45.8
Cc03_g15560 Coffea canephora HOM05D003971 ORTHO05D004762 1.0e-127 461.5 569 48.7
Ah.11g046910 Amaranthus hybridus HOM05D001469 ORTHO05D001648 8.6e-127 458.4 322 66.8
HanXRQChr17g0565911 Helianthus annuus HOM05D003971 ORTHO05D004762 5.6e-118 429.1 317 66.9
Potri.015G106300 Populus trichocarpa HOM05D003971 ORTHO05D004762 2.8e-117 426.8 473 51.0
Aa31LG3G7450 Aethionema arabicum HOM05D003971 ORTHO05D004762 6.8e-116 422.2 268 71.3
AT5G19920 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 6.8e-116 422.2 386 52.3
BcaB08g36556 Brassica carinata HOM05D003971 ORTHO05D004762 6.8e-116 422.2 610 40.2
Solyc03g118220.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 6.8e-116 422.2 454 52.2
BcaC04g19398 Brassica carinata HOM05D003971 ORTHO05D004762 5.8e-115 419.1 552 42.0
Mapoly0008s0248 Marchantia polymorpha HOM05D003971 ORTHO05D004762 5.8e-115 419.1 349 55.6
AL6G31450 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 9.8e-115 418.3 358 54.2
Carub.0006s1829 Capsella rubella HOM05D003971 ORTHO05D004762 9.8e-115 418.3 380 52.6
Sp6g24460 Schrenkiella parvula HOM05D003971 ORTHO05D004762 2.2e-114 417.2 620 41.0
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 6.4e-114 415.6 553 42.0
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 8.3e-114 415.2 553 42.0
BraA10t44057Z Brassica rapa HOM05D003971 ORTHO05D004762 1.9e-113 414.1 605 39.7
A10p19810 Brassica napus HOM05D003971 ORTHO05D004762 5.4e-113 412.5 605 39.5
COL.COLO4_37254 Corchorus olitorius HOM05D003971 ORTHO05D004762 2.7e-112 410.2 522 47.5
Aa31LG10G8100 Aethionema arabicum HOM05D003971 ORTHO05D004762 6.0e-112 409.1 347 55.0
Sc04g0000200 Simmondsia chinensis HOM05D003971 ORTHO05D004762 1.3e-111 407.9 491 46.8
Thhalv10013007m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 2.3e-111 407.1 624 39.3
SEGI_10226 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 6.2e-109 399.1 280 63.2
Pp3c11_18210 Physcomitrium patens HOM05D003971 ORTHO05D004762 2.6e-107 393.7 406 51.5
A02p05920 Brassica napus HOM05D003971 ORTHO05D004762 1.9e-105 387.5 565 39.3
BraA02t05544Z Brassica rapa HOM05D003971 ORTHO05D004762 1.9e-105 387.5 565 39.3
BNapus_Darmor_BZH_scaffold_38p01950 Brassica napus HOM05D003971 ORTHO05D004762 2.7e-104 383.6 568 39.8
BolC2t06996H Brassica oleracea HOM05D003971 ORTHO05D004762 2.7e-104 383.6 568 39.8
CARHR192940 Cardamine hirsuta HOM05D003971 ORTHO05D004762 1.7e-103 380.9 299 56.9
AagrBONN_evm.TU.Sc2ySwM_117.1595 Anthoceros agrestis HOM05D003971 ORTHO05D004762 3.0e-103 380.2 518 41.3
RcHm_v2.0_Chr1g0373351 Rosa chinensis HOM05D003971 ORTHO05D004762 9.5e-102 375.2 312 59.9
HPP92_011657 Vanilla planifolia HOM05D003971 ORTHO05D004762 2.7e-96 357.1 228 70.6
Actinidia25522 Actinidia chinensis HOM05D000512 ORTHO05D004762 1.2e-91 341.7 399 50.1
SGA_v2.0_scaffold74G24722 Striga asiatica HOM05D003971 ORTHO05D004762 4.4e-91 339.7 596 43.0
Eucgr.L01129 Eucalyptus grandis HOM05D003971 ORTHO05D004762 7.6e-91 339.0 208 75.5
Eucgr.L01124 Eucalyptus grandis HOM05D003971 ORTHO05D004762 1.6e-88 331.3 208 74.0
SalBow7G2108 Salvia bowleyana HOM05D003971 ORTHO05D004762 1.3e-87 328.2 624 40.1
Oeu061253.1 Olea europaea HOM05D003971 ORTHO05D004762 1.5e-86 324.7 373 52.8
CBR_g3752 Chara braunii HOM05D003971 ORTHO05D004762 4.3e-86 323.2 299 50.5
Dinv13723 Davidia involucrata HOM05D003971 ORTHO05D004762 1.4e-68 265.0 329 49.5
CDE02G0369 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 5.9e-59 233.0 590 34.9
Dinv23223 Davidia involucrata HOM05D003971 ORTHO05D004762 1.7e-53 214.9 317 45.4
Hma1.2p1_0664F.1_g199006 Hydrangea macrophylla HOM05D003971 ORTHO05D004762 5.0e-50 203.4 125 76.8
Lalb_Chr12g0202501 Lupinus albus HOM05D003971 ORTHO05D004762 2.1e-48 198.0 166 55.4
HPP92_011707 Vanilla planifolia HOM05D003971 ORTHO05D004762 1.4e-44 185.3 332 40.7
SMO334G0050 Selaginella moellendorffii HOM05D003971 ORTHO05D004762 7.7e-43 179.5 273 36.3
Solyc03g118210.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 1.1e-41 175.6 104 76.0
Oeu012846.1 Olea europaea HOM05D003971 ORTHO05D004433 9.4e-41 172.6 138 60.9
CSS0006697 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 1.2e-35 155.6 83 85.5
CSS0040784 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 6.3e-29 133.3 82 74.4
Dinv13722 Davidia involucrata HOM05D000475 ORTHO05D000343 3.1e-28 131.0 69 87.0
Lalb_Chr12g0202511 Lupinus albus HOM05D003971 ORTHO05D004762 1.0e-26 125.9 107 53.3
Dinv23224 Davidia involucrata HOM05D000475 ORTHO05D000343 1.9e-25 121.7 65 87.7
Os08g0511500 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 4.0e-23 114.0 97 57.7
CDE02G2184 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 8.0e-16 89.7 257 33.5
Os03g0851600 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 1.5e-14 85.5 272 30.1
SEGI_28594 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 4.4e-14 84.0 134 43.3
Ah.11g046900 Amaranthus hybridus HOM05D003971 ORTHO05D004762 3.1e-07 61.2 250 28.4
MD03G1215900 Malus domestica HOM05D002303 ORTHO05D007639 5.2e-07 60.5 329 22.2
Mapoly0024s0099 Marchantia polymorpha HOM05D002303 ORTHO05D007639 6.8e-07 60.1 310 21.9
CiPaw.01G169200 Carya illinoinensis HOM05D005323 ORTHO05D006820 7.5e-06 56.6 230 22.6
Os11g0660300 Oryza sativa ssp. japonica HOM05D005151 ORTHO05D006322 9.8e-06 56.2 317 24.0


User provided reference genes

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