Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.22847 Avicennia marina HOM05D004561 ORTHO05D005315 5.9e-149 530.8 259 100.0
MSTRG.11225 Avicennia marina HOM05D004561 ORTHO05D005315 8.0e-122 440.7 258 82.2
Migut.I00621 Erythranthe guttata HOM05D004561 ORTHO05D005315 4.4e-112 408.3 259 74.1
SalBow3G1851 Salvia bowleyana HOM05D004561 ORTHO05D005315 9.2e-110 400.6 271 72.7
Hma1.2p1_0018F.1_g012650 Hydrangea macrophylla HOM05D004561 ORTHO05D005315 1.8e-105 386.3 257 70.4
CSS0045511 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 2.2e-103 379.4 259 68.3
Dinv14864 Davidia involucrata HOM05D004561 ORTHO05D005315 3.7e-103 378.6 258 70.2
QL09p040874 Quercus lobata HOM05D004561 ORTHO05D005315 3.0e-100 369.0 258 66.7
GSVIVG01028605001 Vitis vinifera HOM05D004561 ORTHO05D005315 5.1e-100 368.2 259 67.6
HanXRQChr15g0480201 Helianthus annuus HOM05D004561 ORTHO05D005315 6.6e-100 367.9 258 65.5
SGA_v2.0_scaffold37G14646 Striga asiatica HOM05D004561 ORTHO05D005315 1.9e-99 366.3 235 74.5
Solyc08g074360.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 2.5e-99 365.9 259 66.4
Sopen08g023020 Solanum pennellii HOM05D004561 ORTHO05D005315 5.6e-99 364.8 259 67.2
PGSC0003DMG400009224 Solanum tuberosum HOM05D004561 ORTHO05D005315 2.1e-98 362.8 259 66.4
Prupe.5G069900 Prunus persica HOM05D004561 ORTHO05D005315 4.7e-98 361.7 262 66.4
Solyc11g017400.2 Solanum lycopersicum HOM05D004561 ORTHO05D005315 6.2e-98 361.3 259 66.0
CAN.G370.25 Capsicum annuum HOM05D004561 ORTHO05D005315 1.8e-97 359.8 259 66.4
Potri.012G041700 Populus trichocarpa HOM05D004561 ORTHO05D005315 3.1e-97 359.0 260 63.5
CiPaw.15G149700 Carya illinoinensis HOM05D004561 ORTHO05D005315 5.8e-96 354.8 258 63.6
Sabra12G0028700 Salix brachista HOM05D004561 ORTHO05D005315 1.7e-95 353.2 260 62.3
Thecc.01G124300 Theobroma cacao HOM05D004561 ORTHO05D005315 1.1e-94 350.5 259 62.9
Lj1A1185G61 Lonicera japonica HOM05D004561 ORTHO05D005315 1.6e-93 346.7 296 58.4
TWI15G0666 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 2.1e-93 346.3 258 62.0
MELO3C017214.2 Cucumis melo HOM05D004561 ORTHO05D005315 2.7e-93 345.9 259 63.3
Sed0015683 Sechium edule HOM05D004561 ORTHO05D005315 2.7e-93 345.9 258 62.0
COL.COLO4_13996 Corchorus olitorius HOM05D004561 ORTHO05D005315 4.6e-93 345.1 259 61.8
Lsat_1_v5_gn_7_30581 Lactuca sativa HOM05D004561 ORTHO05D005315 6.0e-93 344.7 261 60.5
Atru.chr13.142 Acer truncatum HOM05D004561 ORTHO05D005315 1.7e-92 343.2 259 62.2
Manes.08G062966 Manihot esculenta HOM05D004561 ORTHO05D005315 1.7e-92 343.2 257 63.0
CsaV3_1G002780 Cucumis sativus L. HOM05D004561 ORTHO05D005315 2.3e-92 342.8 259 63.3
Peaxi162Scf00152g00158 Petunia axillaris HOM05D004561 ORTHO05D005315 3.0e-92 342.4 262 64.1
Oeu031248.3 Olea europaea HOM05D004561 ORTHO05D005315 1.5e-91 340.1 291 59.1
PGSC0003DMG403029595 Solanum tuberosum HOM05D004561 ORTHO05D005315 1.5e-91 340.1 238 67.2
RcHm_v2.0_Chr7g0203331 Rosa chinensis HOM05D004561 ORTHO05D005315 2.5e-91 339.3 262 62.2
ECA233G0879 Erigeron canadensis HOM05D004561 ORTHO05D005315 5.6e-91 338.2 257 61.1
Ciclev10002226m.g Citrus clementina HOM05D004561 ORTHO05D005315 1.2e-90 337.0 257 62.6
Eucgr.B03172 Eucalyptus grandis HOM05D004561 ORTHO05D005315 1.2e-90 337.0 256 60.5
Lalb_Chr12g0208781 Lupinus albus HOM05D004561 ORTHO05D005315 1.2e-90 337.0 260 63.1
Nitab4.5_0000422g0080 Nicotiana tabacum HOM05D004561 ORTHO05D005315 1.2e-90 337.0 241 67.2
TWI81G0190 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 1.2e-90 337.0 257 62.3
Cc03_g07430 Coffea canephora HOM05D004561 ORTHO05D005315 2.8e-90 335.9 260 63.5
Psat1g047920 Pisum sativum HOM05D004561 ORTHO05D005315 2.8e-90 335.9 259 62.5
FAN08G3218 Fragaria x ananassa HOM05D004561 ORTHO05D005315 3.6e-90 335.5 262 60.3
Gohir.A05G386400 Gossypium hirsutum HOM05D004561 ORTHO05D005315 3.6e-90 335.5 259 61.4
Lj4g0004659 Lotus japonicus HOM05D004561 ORTHO05D005315 3.6e-90 335.5 259 61.8
Sc18g0002470 Simmondsia chinensis HOM05D004561 ORTHO05D005315 6.2e-90 334.7 257 60.3
TAR628G1415 Trochodendron aralioides HOM05D004561 ORTHO05D005315 6.2e-90 334.7 260 62.7
Gohir.D04G023500 Gossypium hirsutum HOM05D004561 ORTHO05D005315 8.1e-90 334.3 259 61.4
Nn5g27375 Nelumbo nucifera HOM05D004561 ORTHO05D005315 1.1e-89 334.0 258 60.5
SalBow1G5912 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.8e-89 333.2 200 78.0
FvH4_7g18930 Fragaria vesca HOM05D004561 ORTHO05D005315 2.4e-89 332.8 262 59.5
FAN06G3856 Fragaria x ananassa HOM05D004561 ORTHO05D005315 2.4e-89 332.8 262 59.5
Gorai.012G033300 Gossypium raimondii HOM05D004561 ORTHO05D005315 4.0e-89 332.0 259 61.0
Medtr4g094538 Medicago truncatula HOM05D004561 ORTHO05D005315 6.9e-89 331.3 259 61.0
THA.LOC104822320 Tarenaya hassleriana HOM05D004561 ORTHO05D005315 9.0e-89 330.9 259 60.2
TPR.G30372 Trifolium pratense HOM05D004561 ORTHO05D005315 3.4e-88 328.9 259 60.6
Glyma.08G081300 Glycine max HOM05D004561 ORTHO05D005315 7.6e-88 327.8 261 62.1
FvH4_5g18940 Fragaria vesca HOM05D004561 ORTHO05D005315 9.9e-88 327.4 262 59.5
BraA07t30043Z Brassica rapa HOM05D004561 ORTHO05D005315 2.9e-87 325.9 261 59.0
MD16G1270300 Malus domestica HOM05D004561 ORTHO05D005315 2.9e-87 325.9 221 68.3
FAN06G2746 Fragaria x ananassa HOM05D004561 ORTHO05D005315 4.9e-87 325.1 254 59.8
Sp5g04590 Schrenkiella parvula HOM05D004561 ORTHO05D005315 6.4e-87 324.7 258 59.7
FAN04G2378 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.9e-86 323.2 251 60.2
CARHR168490 Cardamine hirsuta HOM05D004561 ORTHO05D005315 4.2e-86 322.0 258 59.7
unitig_744.g24647 Utricularia gibba HOM05D004561 ORTHO05D005315 4.2e-86 322.0 274 59.9
Peaxi162Scf00310g00711 Petunia axillaris HOM05D004561 ORTHO05D005315 4.6e-85 318.5 233 67.8
BcaB02g07548 Brassica carinata HOM05D004561 ORTHO05D005315 6.0e-85 318.2 280 54.3
PSO210G6857 Papaver somniferum HOM05D004561 ORTHO05D005315 6.0e-85 318.2 257 58.8
A07p23920 Brassica napus HOM05D004561 ORTHO05D005315 7.8e-85 317.8 257 58.0
ClCG06G015750 Citrullus lanatus HOM05D000113 ORTHO05D002571 7.8e-85 317.8 238 62.2
Glyma.05G126500 Glycine max HOM05D004561 ORTHO05D005315 7.8e-85 317.8 279 57.0
Aqoxy6G01699 Aquilegia oxysepala HOM05D004561 ORTHO05D005315 1.3e-84 317.0 258 57.8
VMungo0251G0557 Vigna mungo HOM05D004561 ORTHO05D005315 1.7e-84 316.6 219 66.2
Carub.0005s2498 Capsella rubella HOM05D004561 ORTHO05D005315 2.3e-84 316.2 258 57.4
Hund26218 Selenicereus undatus HOM05D004561 ORTHO05D005315 3.0e-84 315.8 233 60.1
BolC6t37673H Brassica oleracea HOM05D004561 ORTHO05D005315 5.1e-84 315.1 258 58.5
vmacro18667 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 5.1e-84 315.1 326 52.5
Rhsim06G0237000 Rhododendron simsii HOM05D004561 ORTHO05D005315 6.6e-84 314.7 278 56.1
Thhalv10002077m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 1.1e-83 313.9 261 58.6
AT3G58130 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 2.5e-83 312.8 257 58.4
AL5G39820 Arabidopsis lyrata HOM05D004561 ORTHO05D005315 5.6e-83 311.6 258 58.9
FAN18G3337 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.1e-81 307.4 223 62.3
FAN13G2292 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.4e-81 307.0 222 62.2
C06p25150 Brassica napus HOM05D004561 ORTHO05D005315 2.4e-81 306.2 300 51.7
AT2G27340 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 2.2e-79 299.7 254 57.5
Thhalv10002036m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 3.8e-79 298.9 258 57.8
AUR62010959 Chenopodium quinoa HOM05D004561 ORTHO05D005315 6.4e-79 298.1 237 57.8
AUR62007426 Chenopodium quinoa HOM05D004561 ORTHO05D005315 3.2e-78 295.8 237 57.0
ATR0661G441 Amborella trichopoda HOM05D004561 ORTHO05D005315 2.1e-77 293.1 259 54.1
BcaC08g44900 Brassica carinata HOM05D004561 ORTHO05D005315 3.0e-76 289.3 257 53.7
Phvul.002G198500 Phaseolus vulgaris HOM05D004561 ORTHO05D005315 1.1e-75 287.3 200 65.5
CDE04G2633 Ceratophyllum demersum HOM05D004561 ORTHO05D005315 5.6e-75 285.0 221 57.0
EL10Ac8g18446 Beta vulgaris HOM05D004561 ORTHO05D005315 1.6e-74 283.5 254 55.5
Lj6g0005186 Lotus japonicus HOM05D004561 ORTHO05D005315 2.4e-73 279.6 222 59.5
Os04g0678800 Oryza sativa ssp. japonica HOM05D004561 ORTHO05D005315 4.0e-73 278.9 263 52.5
C08p33660 Brassica napus HOM05D004561 ORTHO05D005315 2.6e-72 276.2 258 53.1
AUR62021469 Chenopodium quinoa HOM05D004561 ORTHO05D005315 5.8e-72 275.0 213 60.1
Zm00001eb433850 Zea mays HOM05D004561 ORTHO05D005315 4.2e-70 268.9 259 50.6
Sopen11g009350 Solanum pennellii HOM05D004561 ORTHO05D005315 8.7e-68 261.2 182 64.3
Aa31LG10G12840 Aethionema arabicum HOM05D004561 ORTHO05D005315 5.6e-67 258.5 303 47.2
DCAR_002722 Daucus carota HOM05D004561 ORTHO05D005315 1.6e-66 256.9 183 64.5
SHI05351 Sapria himalayana HOM05D004561 ORTHO05D005315 2.4e-65 253.1 261 51.7
CAN.G1530.1 Capsicum annuum HOM05D004561 ORTHO05D005315 6.9e-65 251.5 185 64.9
BcaC07g40276 Brassica carinata HOM05D004561 ORTHO05D005315 5.8e-64 248.4 225 52.4
RcHm_v2.0_Chr7g0203411 Rosa chinensis HOM05D004561 ORTHO05D005315 8.4e-63 244.6 233 52.4
arahy.Tifrunner.gnm1.ann1.AX2CN5 Arachis hypogaea HOM05D004561 ORTHO05D005315 1.0e-60 237.7 264 47.7
vmacro21453 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 1.5e-56 223.8 196 57.7
FAN18G2677 Fragaria x ananassa HOM05D004561 ORTHO05D005315 3.4e-56 222.6 184 56.5
A09p50910 Brassica napus HOM05D004561 ORTHO05D005315 4.2e-54 215.7 223 48.9
HPP92_027560 Vanilla planifolia HOM05D004561 ORTHO05D005315 1.2e-53 214.2 191 53.4
PSO761G0502 Papaver somniferum HOM05D004561 ORTHO05D005315 2.3e-52 209.9 177 57.6
ECA236G3170 Erigeron canadensis HOM05D004561 ORTHO05D005315 5.1e-52 208.8 141 63.1
arahy.Tifrunner.gnm1.ann1.3X42ZC Arachis hypogaea HOM05D004561 ORTHO05D005315 4.3e-51 205.7 173 58.4
AagrBONN_evm.TU.Sc2ySwM_368.3407 Anthoceros agrestis HOM05D004561 ORTHO05D005315 1.8e-49 200.3 270 40.4
Pp3c13_19470 Physcomitrium patens HOM05D004561 ORTHO05D005315 6.9e-49 198.4 212 43.9
Nitab4.5_0000560g0110 Nicotiana tabacum HOM05D004561 ORTHO05D005315 2.6e-48 196.4 151 63.6
BcaC07g40185 Brassica carinata HOM05D004561 ORTHO05D005315 3.4e-48 196.1 220 46.4
CiPaw.16G098200 Carya illinoinensis HOM05D004561 ORTHO05D005315 3.8e-47 192.6 149 61.7
BolC8t50963H Brassica oleracea HOM05D004561 ORTHO05D005315 5.5e-46 188.7 176 50.6
Zm00001eb066050 Zea mays HOM05D004561 ORTHO05D005315 3.6e-45 186.0 186 51.1
Haze_18936 Corylus avellana HOM05D004561 ORTHO05D005315 4.7e-45 185.7 166 56.6
AUR62002652 Chenopodium quinoa HOM05D004561 ORTHO05D005315 1.8e-44 183.7 223 42.6
Sopen08g022960 Solanum pennellii HOM05D004561 ORTHO05D005315 6.7e-44 181.8 130 68.5
Carub.0339s0001 Capsella rubella HOM05D004561 ORTHO05D005315 1.1e-43 181.0 141 58.2
Mapoly0029s0047 Marchantia polymorpha HOM05D004561 ORTHO05D005315 2.2e-42 176.8 251 37.5
Cpa.g.sc437.1 Carica papaya HOM05D004561 ORTHO05D005315 4.5e-40 169.1 145 54.5
Carub.0008s0419 Capsella rubella HOM05D004561 ORTHO05D005315 1.7e-39 167.2 126 63.5
SalBow1G7315 Salvia bowleyana HOM05D004561 ORTHO05D005315 3.8e-39 166.0 239 42.7
MCO09G807 Micromonas commoda HOM05D004561 ORTHO05D005315 2.1e-37 160.2 217 38.7
SalBow1G4548 Salvia bowleyana HOM05D004561 ORTHO05D005315 8.0e-37 158.3 156 51.3
MD06G1059000 Malus domestica HOM05D004561 ORTHO05D005315 4.4e-35 152.5 115 59.1
Hund02231 Selenicereus undatus HOM05D004561 ORTHO05D005315 1.7e-34 150.6 203 41.9
CSS0036958 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 7.7e-32 141.7 86 73.3
Hund26251 Selenicereus undatus HOM05D004561 ORTHO05D005315 2.2e-31 140.2 113 58.4
CSS0005948 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 5.0e-31 139.0 86 72.1
CSS0005045 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 6.5e-31 138.7 86 72.1
CSS0006634 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 1.9e-30 137.1 86 69.8
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 4.2e-30 136.0 371 28.6
Sopen05g006540 Solanum pennellii HOM05D004561 ORTHO05D005315 5.2e-28 129.0 150 46.7
PRCOL_00001899 Prasinoderma coloniale HOM05D004561 ORTHO05D005315 8.8e-28 128.3 222 33.3
Cre06.g300100 Chlamydomonas reinhardtii HOM05D004561 ORTHO05D005315 1.2e-27 127.9 292 29.1
SalBow1G5331 Salvia bowleyana HOM05D004561 ORTHO05D005315 2.6e-27 126.7 67 80.6
SalBow1G2796 Salvia bowleyana HOM05D004561 ORTHO05D005315 7.5e-27 125.2 67 79.1
SalBow1G4039 Salvia bowleyana HOM05D004561 ORTHO05D005315 3.7e-26 122.9 67 74.6
arahy.Tifrunner.gnm1.ann1.Y05SLV Arachis hypogaea HOM05D004561 ORTHO05D005315 7.0e-25 118.6 97 56.7
SalBow1G6765 Salvia bowleyana HOM05D004561 ORTHO05D005315 2.2e-23 113.6 81 72.8
MBI08_g32523_MAGBIO Magnolia biondii HOM05D004561 ORTHO05D005315 4.7e-21 105.9 75 60.0
Nitab4.5_0013603g0010 Nicotiana tabacum HOM05D004561 ORTHO05D005315 6.1e-21 105.5 72 66.7
RcHm_v2.0_Chr7g0204241 Rosa chinensis HOM05D004561 ORTHO05D005315 8.0e-21 105.1 90 57.8
Solyc05g010730.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 1.2e-19 101.3 69 65.2
SEGI_12631 Sequoiadendron giganteum HOM05D004561 ORTHO05D005315 3.4e-19 99.8 88 51.1
SalBow1G0427 Salvia bowleyana HOM05D006885 ORTHO05D008606 1.4e-17 94.4 89 55.1
RcHm_v2.0_Chr7g0204201 Rosa chinensis HOM05D004561 ORTHO05D005315 1.3e-15 87.8 82 53.7
Cpa.g.c32558.1 Carica papaya HOM05D004561 ORTHO05D005315 5.0e-15 85.9 63 57.1
SHI05852 Sapria himalayana HOM05D000002 ORTHO05D000001 6.1e-13 79.0 85 50.6
SalBow1G4445 Salvia bowleyana HOM05D025598 ORTHO05D005315 1.5e-11 74.3 51 70.6
SHI05337 Sapria himalayana HOM05D004561 ORTHO05D005315 2.7e-08 63.5 87 42.5
FvH4_5g18980 Fragaria vesca HOM05D004561 ORTHO05D005315 5.9e-08 62.4 55 54.5
Ca_17309_v3 Cicer arietinum L. HOM05D002967 ORTHO05D003281 1.9e-06 57.4 60 43.3
Cc05_g02560 Coffea canephora HOM05D004561 ORTHO05D005315 5.6e-06 55.8 66 40.9


User provided reference genes

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