Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.22808 Avicennia marina HOM05D004918 ORTHO05D005706 2.7e-126 455.3 219 100.0
Migut.I00673 Erythranthe guttata HOM05D004918 ORTHO05D005706 6.8e-106 387.5 218 82.6
SGA_v2.0_scaffold419G51286 Striga asiatica HOM05D004918 ORTHO05D005706 8.4e-96 354.0 219 75.3
SalBow8G2778 Salvia bowleyana HOM05D004918 ORTHO05D005706 3.6e-91 338.6 230 70.9
Oeu004556.1 Olea europaea HOM05D004918 ORTHO05D005706 5.4e-87 324.7 208 71.6
Dinv23270 Davidia involucrata HOM05D004918 ORTHO05D005706 1.4e-82 310.1 218 66.1
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 4.5e-81 305.1 202 73.8
Cc04_g05650 Coffea canephora HOM05D004918 ORTHO05D005706 1.1e-79 300.4 211 65.4
Cc04_g05280 Coffea canephora HOM05D004918 ORTHO05D005706 4.2e-79 298.5 211 64.9
Hma1.2p1_1914F.1_g307380 Hydrangea macrophylla HOM05D004918 ORTHO05D005706 3.0e-77 292.4 206 64.1
Ciclev10026430m.g Citrus clementina HOM05D004918 ORTHO05D005706 3.9e-77 292.0 211 61.6
DCAR_025541 Daucus carota HOM05D004918 ORTHO05D005706 5.1e-77 291.6 212 60.4
CSS0025832 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 8.7e-77 290.8 205 62.9
Thecc.06G046100 Theobroma cacao HOM05D004918 ORTHO05D005706 3.3e-76 288.9 216 60.2
TAR625G0238 Trochodendron aralioides HOM05D004918 ORTHO05D005706 7.4e-76 287.7 213 62.9
Sc05g0005820 Simmondsia chinensis HOM05D004918 ORTHO05D005706 2.8e-75 285.8 206 61.7
Nn2g14031 Nelumbo nucifera HOM05D004918 ORTHO05D005706 3.6e-75 285.4 205 62.9
PGSC0003DMG400014153 Solanum tuberosum HOM05D004918 ORTHO05D005706 4.8e-75 285.0 211 63.0
Actinidia25464 Actinidia chinensis HOM05D004918 ORTHO05D005706 1.1e-74 283.9 201 64.2
Nn2g12451 Nelumbo nucifera HOM05D004918 ORTHO05D005706 1.4e-74 283.5 205 62.0
Peaxi162Scf00314g01045 Petunia axillaris HOM05D004918 ORTHO05D005706 1.4e-74 283.5 205 62.4
ECA232G4560 Erigeron canadensis HOM05D004918 ORTHO05D005706 1.8e-74 283.1 218 61.0
Manes.11G069000 Manihot esculenta HOM05D004918 ORTHO05D005706 6.9e-74 281.2 211 60.2
Duzib192G0308 Durio zibethinus HOM05D004918 ORTHO05D005706 9.0e-74 280.8 214 60.3
HanXRQChr17g0561891 Helianthus annuus HOM05D004918 ORTHO05D005706 1.2e-73 280.4 213 63.4
Atru.chr1.2801 Acer truncatum HOM05D004918 ORTHO05D005706 3.4e-73 278.9 205 61.0
Sopen03g036560 Solanum pennellii HOM05D004918 ORTHO05D005706 3.4e-73 278.9 216 60.6
Sabra03G0135200 Salix brachista HOM05D004918 ORTHO05D005706 9.9e-73 277.3 218 60.1
Potri.003G184701 Populus trichocarpa HOM05D004918 ORTHO05D005706 2.9e-72 275.8 218 59.6
Cpa.g.sc14.108 Carica papaya HOM05D004918 ORTHO05D005706 4.9e-72 275.0 211 59.2
TWI12G0375 Tripterygium wilfordii HOM05D004918 ORTHO05D005706 4.9e-72 275.0 205 60.0
Nitab4.5_0004738g0120 Nicotiana tabacum HOM05D004918 ORTHO05D005706 6.4e-72 274.6 224 58.9
HanXRQChr10g0298641 Helianthus annuus HOM05D004918 ORTHO05D005706 1.4e-71 273.5 211 64.0
Gorai.009G122300 Gossypium raimondii HOM05D004918 ORTHO05D005706 2.4e-71 272.7 202 60.9
Nitab4.5_0002700g0180 Nicotiana tabacum HOM05D004918 ORTHO05D005706 2.4e-71 272.7 218 59.2
MD12G1013200 Malus domestica HOM05D004918 ORTHO05D005706 2.7e-70 269.2 211 60.7
ClCG10G012810 Citrullus lanatus HOM05D004918 ORTHO05D005706 4.6e-70 268.5 204 60.3
Oeu035883.1 Olea europaea HOM05D004918 ORTHO05D005706 1.3e-69 266.9 173 72.8
GSVIVG01016107001 Vitis vinifera HOM05D004918 ORTHO05D005706 1.3e-69 266.9 203 59.6
Cfa001859 Carpinus fangiana HOM05D004918 ORTHO05D005706 1.8e-69 266.5 219 55.7
Gohir.A05G117500 Gossypium hirsutum HOM05D004918 ORTHO05D005706 1.8e-69 266.5 202 59.9
Prupe.3G103300 Prunus persica HOM05D004918 ORTHO05D005706 1.8e-69 266.5 211 60.2
Atru.chr8.1159 Acer truncatum HOM05D004918 ORTHO05D005706 3.0e-69 265.8 204 60.8
RcHm_v2.0_Chr2g0132361 Rosa chinensis HOM05D004918 ORTHO05D005706 3.0e-69 265.8 211 59.2
MD14G1138800 Malus domestica HOM05D004918 ORTHO05D005706 8.7e-69 264.2 213 60.1
QL10p031453 Quercus lobata HOM05D004918 ORTHO05D005706 1.9e-68 263.1 188 61.7
Eucgr.F03982 Eucalyptus grandis HOM05D004918 ORTHO05D005706 3.3e-68 262.3 205 59.5
PGR102G0155 Punica granatum HOM05D004918 ORTHO05D005706 3.3e-68 262.3 202 58.4
CsaV3_3G032650 Cucumis sativus L. HOM05D004918 ORTHO05D005706 7.4e-68 261.2 205 59.5
THA.LOC104808174 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 9.6e-68 260.8 204 59.3
CiPaw.01G073400 Carya illinoinensis HOM05D004918 ORTHO05D005706 1.6e-67 260.0 213 58.2
CARHR016550 Cardamine hirsuta HOM05D004918 ORTHO05D005706 2.1e-67 259.6 200 58.5
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 3.7e-67 258.8 203 58.6
BraA09t41477Z Brassica rapa HOM05D004918 ORTHO05D005706 4.8e-67 258.5 203 59.1
BcaB03g14507 Brassica carinata HOM05D004918 ORTHO05D005706 1.1e-66 257.3 203 58.6
CANSAT35G0550 Cannabis sativa HOM05D004918 ORTHO05D005706 1.4e-66 256.9 211 52.6
A09p61040 Brassica napus HOM05D004918 ORTHO05D005706 2.4e-66 256.1 208 55.8
Thhalv10008658m.g Eutrema salsugineum HOM05D004918 ORTHO05D005706 2.4e-66 256.1 199 58.3
Ah.01g002790 Amaranthus hybridus HOM05D004918 ORTHO05D005706 9.0e-66 254.2 189 60.3
CiPaw.02G163500 Carya illinoinensis HOM05D004918 ORTHO05D005706 1.2e-65 253.8 211 56.9
Lj6g0018730 Lotus japonicus HOM05D004918 ORTHO05D005706 1.2e-65 253.8 211 53.1
Aa31LG7G620 Aethionema arabicum HOM05D004918 ORTHO05D005706 2.0e-65 253.1 199 57.8
TPR.G15094 Trifolium pratense HOM05D004918 ORTHO05D005706 2.0e-65 253.1 204 55.4
A08p31410 Brassica napus HOM05D004918 ORTHO05D005706 3.4e-65 252.3 194 57.7
BraA08t35064Z Brassica rapa HOM05D004918 ORTHO05D005706 3.4e-65 252.3 194 57.7
Carub.0001s1585 Capsella rubella HOM05D004918 ORTHO05D005706 5.8e-65 251.5 194 56.7
AL1G28210 Arabidopsis lyrata HOM05D004918 ORTHO05D005706 7.6e-65 251.1 199 56.3
Sp1g14360 Schrenkiella parvula HOM05D004918 ORTHO05D005706 7.6e-65 251.1 200 58.0
Lalb_Chr13g0301111 Lupinus albus HOM05D004918 ORTHO05D005706 1.3e-64 250.4 211 53.1
Solyc03g117650.4 Solanum lycopersicum HOM05D004918 ORTHO05D005706 1.3e-64 250.4 211 57.8
THA.LOC104812419 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 1.7e-64 250.0 204 55.9
Lsat_1_v5_gn_4_85101 Lactuca sativa HOM05D004918 ORTHO05D005706 2.9e-64 249.2 173 65.9
Sed0025979 Sechium edule HOM05D004918 ORTHO05D005706 3.8e-64 248.8 233 50.2
Glyma.09G000800 Glycine max HOM05D004918 ORTHO05D005706 4.9e-64 248.4 211 53.6
BcaC05g25623 Brassica carinata HOM05D004918 ORTHO05D005706 6.5e-64 248.1 200 57.0
C05p14240 Brassica napus HOM05D004918 ORTHO05D005706 6.5e-64 248.1 200 57.0
PGSC0003DMG402014462 Solanum tuberosum HOM05D004918 ORTHO05D005706 6.5e-64 248.1 211 53.1
BcaC07g38802 Brassica carinata HOM05D004918 ORTHO05D005706 8.4e-64 247.7 194 57.7
CDE02G0643 Ceratophyllum demersum HOM05D004918 ORTHO05D005706 2.5e-63 246.1 199 56.3
Medtr3g110270 Medicago truncatula HOM05D004918 ORTHO05D005706 2.5e-63 246.1 205 54.6
A06p12070 Brassica napus HOM05D004918 ORTHO05D005706 3.2e-63 245.7 200 56.5
MBI19_g12142_MAGBIO Magnolia biondii HOM05D004918 ORTHO05D005706 3.2e-63 245.7 211 55.9
BcaB02g06654 Brassica carinata HOM05D004918 ORTHO05D005706 5.5e-63 245.0 200 56.5
PSO724G0600 Papaver somniferum HOM05D004918 ORTHO05D005706 9.3e-63 244.2 190 56.3
PSO729G0217 Papaver somniferum HOM05D004918 ORTHO05D005706 9.3e-63 244.2 190 56.3
FAN09G4697 Fragaria x ananassa HOM05D004918 ORTHO05D005706 1.6e-62 243.4 223 53.4
C08p17380 Brassica napus HOM05D004918 ORTHO05D005706 2.1e-62 243.0 194 56.2
BolC8t49364H Brassica oleracea HOM05D004918 ORTHO05D005706 2.1e-62 243.0 194 56.2
PSO017G2949 Papaver somniferum HOM05D004918 ORTHO05D005706 2.7e-62 242.7 190 56.3
COL.COLO4_24896 Corchorus olitorius HOM05D004918 ORTHO05D005706 3.5e-62 242.3 201 55.7
VMungo1309G0542 Vigna mungo HOM05D004918 ORTHO05D005706 6.0e-62 241.5 205 53.7
AT1G16040 Arabidopsis thaliana HOM05D004918 ORTHO05D005706 7.9e-62 241.1 186 58.6
SEGI_14369 Sequoiadendron giganteum HOM05D004918 ORTHO05D005706 7.9e-62 241.1 207 53.1
HanXRQChr16g0499441 Helianthus annuus HOM05D004918 ORTHO05D005706 1.0e-61 240.7 213 58.2
Psat5g020280 Pisum sativum HOM05D004918 ORTHO05D005706 1.8e-61 240.0 221 50.7
PSO063G6564 Papaver somniferum HOM05D004918 ORTHO05D005706 3.9e-61 238.8 193 53.9
BolC5t30156H Brassica oleracea HOM05D004918 ORTHO05D005706 5.1e-61 238.4 201 55.7
BraA06t24376Z Brassica rapa HOM05D004918 ORTHO05D005706 5.1e-61 238.4 201 55.2
arahy.Tifrunner.gnm1.ann1.T9YNFF Arachis hypogaea HOM05D004918 ORTHO05D005706 1.1e-60 237.3 208 52.4
Rhsim08G0203200 Rhododendron simsii HOM05D004918 ORTHO05D005706 1.1e-60 237.3 174 62.1
Phvul.009G194500 Phaseolus vulgaris HOM05D004918 ORTHO05D005706 9.6e-60 234.2 205 51.2
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 6.3e-59 231.5 228 51.8
MELO3C028676.2 Cucumis melo HOM05D004918 ORTHO05D005706 6.3e-59 231.5 198 54.5
FAN02G2144 Fragaria x ananassa HOM05D004918 ORTHO05D005706 6.9e-58 228.0 234 50.0
Sopen12g021620 Solanum pennellii HOM05D004918 ORTHO05D005706 9.0e-58 227.6 211 49.8
HPP92_001544 Vanilla planifolia HOM05D004918 ORTHO05D005706 9.0e-58 227.6 188 56.4
Solyc12g042530.2 Solanum lycopersicum HOM05D004918 ORTHO05D005706 2.0e-57 226.5 211 50.2
BcaB03g13048 Brassica carinata HOM05D004918 ORTHO05D005706 2.6e-57 226.1 221 49.8
CAN.G276.2 Capsicum annuum HOM05D004918 ORTHO05D005706 5.0e-56 221.9 163 63.2
ATR0568G024 Amborella trichopoda HOM05D004918 ORTHO05D005706 1.1e-55 220.7 166 60.2
Zm00001eb403520 Zea mays HOM05D004918 ORTHO05D005706 2.1e-54 216.5 222 48.2
unitig_62.g23577 Utricularia gibba HOM05D004918 ORTHO05D005706 3.6e-54 215.7 252 46.0
arahy.Tifrunner.gnm1.ann1.ZUNL57 Arachis hypogaea HOM05D004918 ORTHO05D005706 6.1e-54 214.9 208 49.5
SHI05687 Sapria himalayana HOM05D004918 ORTHO05D005706 7.9e-54 214.5 190 49.5
Glyma.09G000900 Glycine max HOM05D004918 ORTHO05D005706 1.0e-53 214.2 167 56.9
Os03g0129000 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 3.9e-53 212.2 242 46.3
vmacro19072 Vaccinium macrocarpon HOM05D004918 ORTHO05D005706 5.7e-52 208.4 205 50.2
FAN09G3573 Fragaria x ananassa HOM05D004918 ORTHO05D005706 3.7e-51 205.7 230 49.1
Haze_16687 Corylus avellana HOM05D004918 ORTHO05D005706 7.7e-49 198.0 183 52.5
Aqoxy4G02614 Aquilegia oxysepala HOM05D004918 ORTHO05D005706 2.5e-47 193.0 115 70.4
CAN.G1008.5 Capsicum annuum HOM05D000348 ORTHO05D005706 1.6e-46 190.3 173 55.5
EL10Ac4g09605 Beta vulgaris HOM05D004918 ORTHO05D005706 1.7e-43 180.3 186 48.4
Pp3c8_15970 Physcomitrium patens HOM05D004918 ORTHO05D005706 1.4e-42 177.2 214 44.9
arahy.Tifrunner.gnm1.ann1.BN6NH6 Arachis hypogaea HOM05D004918 ORTHO05D005706 3.1e-42 176.0 208 43.3
FAN14G3036 Fragaria x ananassa HOM05D004918 ORTHO05D005706 5.3e-42 175.3 252 42.1
arahy.Tifrunner.gnm1.ann1.U5XJV3 Arachis hypogaea HOM05D004918 ORTHO05D005706 4.5e-41 172.2 206 42.7
Mapoly0005s0096 Marchantia polymorpha HOM05D004918 ORTHO05D005706 1.9e-39 166.8 191 41.4
CBR_g41678 Chara braunii HOM05D004918 ORTHO05D005706 7.2e-39 164.9 130 51.5
Ca_15577_v3 Cicer arietinum L. HOM05D004918 ORTHO05D005706 1.6e-38 163.7 108 64.8
FvH4_6g28300 Fragaria vesca HOM05D004918 ORTHO05D005706 2.8e-35 152.9 134 57.5
SMO351G0301 Selaginella moellendorffii HOM05D004918 ORTHO05D005706 2.8e-27 126.3 151 43.0
Gohir.D05G118400 Gossypium hirsutum HOM05D004918 ORTHO05D005706 2.1e-22 110.2 106 50.9
Os10g0200800 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 4.7e-22 109.0 71 62.0
AagrBONN_evm.TU.Sc2ySwM_344.4108 Anthoceros agrestis HOM05D004918 ORTHO05D005706 1.0e-21 107.8 78 55.1
CAN.G1986.5 Capsicum annuum HOM05D004918 ORTHO05D005706 5.7e-20 102.1 84 54.8
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 4.1e-18 95.9 94 50.0
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 1.2e-17 94.4 96 46.9
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 1.3e-16 90.9 83 48.2
Zm00001eb002240 Zea mays HOM05D004918 ORTHO05D005706 5.5e-15 85.5 131 44.3
BcaC05g25622 Brassica carinata HOM05D004918 ORTHO05D005706 9.5e-15 84.7 45 73.3
CSS0035645 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 9.5e-15 84.7 87 51.7
MELO3C000966.2 Cucumis melo HOM05D004918 ORTHO05D005706 2.0e-12 77.0 73 50.7
BcaC03g14995 Brassica carinata HOM05D004918 ORTHO05D005706 2.6e-12 76.6 55 56.4
MCO15G581 Micromonas commoda HOM05D004918 ORTHO05D005706 9.8e-12 74.7 171 30.4
AUR62034078 Chenopodium quinoa HOM05D004918 ORTHO05D005706 1.4e-10 70.9 52 65.4
Cfa026120 Carpinus fangiana HOM05D004918 ORTHO05D125238 1.8e-10 70.5 128 34.4
Actinidia08937 Actinidia chinensis HOM05D004918 ORTHO05D005706 3.1e-10 69.7 49 63.3
Sed0005872 Sechium edule HOM05D004918 ORTHO05D005706 5.4e-10 68.9 80 42.5
CSS0004145 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 3.5e-09 66.2 77 48.1
AUR62012861 Chenopodium quinoa HOM05D004918 ORTHO05D005706 5.9e-09 65.5 51 62.7
CAN.G1235.23 Capsicum annuum HOM05D004918 ORTHO05D005706 1.9e-07 60.5 33 66.7


User provided reference genes

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