Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.22659 Avicennia marina HOM05D005761 ORTHO05D007286 6.1e-77 290.8 153 100.0
Cc04_g07670 Coffea canephora HOM05D005761 ORTHO05D007286 1.8e-65 252.7 155 79.4
Nitab4.5_0001315g0120 Nicotiana tabacum HOM05D005761 ORTHO05D007286 2.4e-65 252.3 141 85.1
SGA_v2.0_scaffold5G02550 Striga asiatica HOM05D005761 ORTHO05D007286 3.1e-65 251.9 152 78.9
CAN.G438.30 Capsicum annuum HOM05D005761 ORTHO05D007286 4.1e-65 251.5 154 78.6
Nitab4.5_0007217g0020 Nicotiana tabacum HOM05D005761 ORTHO05D007286 5.3e-65 251.1 141 84.4
unitig_37.g12255 Utricularia gibba HOM05D005761 ORTHO05D007286 7.0e-65 250.8 153 78.4
PGSC0003DMG401002548 Solanum tuberosum HOM05D005761 ORTHO05D007286 9.1e-65 250.4 154 77.9
Migut.I00937 Erythranthe guttata HOM05D005761 ORTHO05D007286 1.2e-64 250.0 153 78.4
Peaxi162Scf00015g00136 Petunia axillaris HOM05D005761 ORTHO05D007286 1.2e-64 250.0 141 85.1
SGA_v2.0_scaffold80G25854 Striga asiatica HOM05D005761 ORTHO05D007286 2.6e-64 248.8 153 79.1
Nitab4.5_0006311g0030 Nicotiana tabacum HOM05D005761 ORTHO05D007286 3.5e-64 248.4 141 83.7
DCAR_016208 Daucus carota HOM05D005761 ORTHO05D007286 5.9e-64 247.7 158 75.3
Gohir.D05G131700 Gossypium hirsutum HOM05D005761 ORTHO05D007286 5.9e-64 247.7 141 83.7
Gorai.009G135400 Gossypium raimondii HOM05D005761 ORTHO05D007286 5.9e-64 247.7 141 83.7
Lj5A57G74 Lonicera japonica HOM05D005761 ORTHO05D007286 5.9e-64 247.7 157 76.4
COL.COLO4_30441 Corchorus olitorius HOM05D005761 ORTHO05D007286 1.0e-63 246.9 141 82.3
Manes.04G130300 Manihot esculenta HOM05D005761 ORTHO05D007286 1.3e-63 246.5 155 75.5
Solyc03g120610.3 Solanum lycopersicum HOM05D005761 ORTHO05D007286 1.3e-63 246.5 154 75.3
Sopen00g008190 Solanum pennellii HOM05D005761 ORTHO05D007286 1.3e-63 246.5 154 75.3
Gohir.A05G132200 Gossypium hirsutum HOM05D005761 ORTHO05D007286 1.7e-63 246.1 141 83.0
Rhsim08G0224400 Rhododendron simsii HOM05D005761 ORTHO05D007286 1.7e-63 246.1 155 76.1
Gohir.A10G081800 Gossypium hirsutum HOM05D005761 ORTHO05D007286 2.2e-63 245.7 141 83.0
vmacro18882 Vaccinium macrocarpon HOM05D005761 ORTHO05D007286 3.8e-63 245.0 154 76.6
Duzib192G1004 Durio zibethinus HOM05D005761 ORTHO05D007286 5.0e-63 244.6 155 77.4
CiPaw.01G235200 Carya illinoinensis HOM05D005761 ORTHO05D007286 6.5e-63 244.2 154 76.6
Dinv38013 Davidia involucrata HOM05D005761 ORTHO05D007286 6.5e-63 244.2 155 74.8
Eucgr.F03043 Eucalyptus grandis HOM05D005761 ORTHO05D007286 6.5e-63 244.2 155 75.5
Gorai.011G073900 Gossypium raimondii HOM05D005761 ORTHO05D007286 6.5e-63 244.2 141 82.3
EL10Ac9g22057 Beta vulgaris HOM05D005761 ORTHO05D007286 8.5e-63 243.8 155 76.8
CSS0019454 Camellia sinensis var. sinensis HOM05D005761 ORTHO05D007286 8.5e-63 243.8 155 75.5
CSS0045926 Camellia sinensis var. sinensis HOM05D005761 ORTHO05D007286 8.5e-63 243.8 155 75.5
Gohir.D10G069650 Gossypium hirsutum HOM05D005761 ORTHO05D007286 8.5e-63 243.8 141 82.3
Psat2g181000 Pisum sativum HOM05D005761 ORTHO05D007286 1.1e-62 243.4 160 73.8
Thecc.06G093100 Theobroma cacao HOM05D005761 ORTHO05D007286 1.5e-62 243.0 141 82.3
Atru.chr5.1334 Acer truncatum HOM05D005761 ORTHO05D007286 1.9e-62 242.7 141 81.6
arahy.Tifrunner.gnm1.ann1.IDML3X Arachis hypogaea HOM05D005761 ORTHO05D007286 1.9e-62 242.7 155 75.5
arahy.Tifrunner.gnm1.ann1.QAD112 Arachis hypogaea HOM05D005761 ORTHO05D007286 1.9e-62 242.7 155 74.8
Hma1.2p1_1195F.1_g265890 Hydrangea macrophylla HOM05D005761 ORTHO05D007286 1.9e-62 242.7 141 81.6
Prupe.6G357100 Prunus persica HOM05D005761 ORTHO05D007286 2.5e-62 242.3 155 76.1
Sabra01G0154700 Salix brachista HOM05D005761 ORTHO05D007286 2.5e-62 242.3 154 77.3
Lj3g0012819 Lotus japonicus HOM05D005761 ORTHO05D007286 3.2e-62 241.9 141 82.3
TWI12G1054 Tripterygium wilfordii HOM05D005761 ORTHO05D007286 3.2e-62 241.9 154 74.0
Glyma.08G204400 Glycine max HOM05D005761 ORTHO05D007286 4.2e-62 241.5 155 76.1
Potri.003G052000 Populus trichocarpa HOM05D005761 ORTHO05D007286 4.2e-62 241.5 152 75.7
Cpa.g.sc33.106 Carica papaya HOM05D005761 ORTHO05D007286 5.5e-62 241.1 153 75.8
Cfa014791 Carpinus fangiana HOM05D005761 ORTHO05D007286 5.5e-62 241.1 150 78.0
Ca_06670_v3 Cicer arietinum L. HOM05D005761 ORTHO05D007286 5.5e-62 241.1 160 73.8
Haze_16351 Corylus avellana HOM05D005761 ORTHO05D007286 7.2e-62 240.7 154 74.7
Nn3g18106 Nelumbo nucifera HOM05D005761 ORTHO05D007286 1.2e-61 240.0 153 75.8
Ciclev10022630m.g Citrus clementina HOM05D005761 ORTHO05D007286 1.6e-61 239.6 155 73.5
TWI75G0371 Tripterygium wilfordii HOM05D005761 ORTHO05D007286 1.6e-61 239.6 154 74.7
Nn2g11672 Nelumbo nucifera HOM05D005761 ORTHO05D007286 2.1e-61 239.2 150 74.0
Atru.chr5.1303 Acer truncatum HOM05D005761 ORTHO05D007286 2.7e-61 238.8 141 79.4
PSO063G2446 Papaver somniferum HOM05D005761 ORTHO05D007286 3.6e-61 238.4 151 74.8
RcHm_v2.0_Chr2g0139151 Rosa chinensis HOM05D005761 ORTHO05D007286 3.6e-61 238.4 155 72.9
CDE05G3104 Ceratophyllum demersum HOM05D005761 ORTHO05D007286 4.7e-61 238.0 149 75.8
QL05p021523 Quercus lobata HOM05D005761 ORTHO05D007286 4.7e-61 238.0 154 74.7
PSO170G4248 Papaver somniferum HOM05D005761 ORTHO05D007286 6.1e-61 237.7 151 74.2
DCAR_023065 Daucus carota HOM05D005761 ORTHO05D007286 1.0e-60 236.9 156 73.1
Cfa002100 Carpinus fangiana HOM05D005761 ORTHO05D001133 1.8e-60 236.1 150 76.7
FvH4_6g31840 Fragaria vesca HOM05D005761 ORTHO05D007286 1.8e-60 236.1 152 73.7
FAN09G1691 Fragaria x ananassa HOM05D005761 ORTHO05D007286 1.8e-60 236.1 152 73.7
FAN14G3194 Fragaria x ananassa HOM05D005761 ORTHO05D007286 1.8e-60 236.1 152 73.7
Phvul.010G148400 Phaseolus vulgaris HOM05D005761 ORTHO05D007286 1.8e-60 236.1 156 75.0
Lj9C509G5 Lonicera japonica HOM05D003521 ORTHO05D000476 2.3e-60 235.7 156 73.7
Oeu000460.1 Olea europaea HOM05D005761 ORTHO05D007286 2.3e-60 235.7 153 73.2
Peaxi162Scf00029g02413 Petunia axillaris HOM05D005761 ORTHO05D007286 2.3e-60 235.7 160 74.4
ATR0315G131 Amborella trichopoda HOM05D005761 ORTHO05D007286 4.0e-60 235.0 147 72.8
Sed0000486 Sechium edule HOM05D005761 ORTHO05D007286 6.7e-60 234.2 153 73.2
Lalb_Chr25g0280001 Lupinus albus HOM05D005761 ORTHO05D007286 8.8e-60 233.8 149 75.8
THA.LOC104813554 Tarenaya hassleriana HOM05D005761 ORTHO05D007286 8.8e-60 233.8 154 72.7
Ah.01g005570 Amaranthus hybridus HOM05D005761 ORTHO05D001133 1.1e-59 233.4 178 66.9
PGR102G2101 Punica granatum HOM05D005761 ORTHO05D007286 1.1e-59 233.4 158 71.5
MBI01_g30861_MAGBIO Magnolia biondii HOM05D005761 ORTHO05D007286 1.5e-59 233.0 141 77.3
MD17G1190700 Malus domestica HOM05D005761 ORTHO05D007286 1.5e-59 233.0 141 78.0
Zm00001eb237310 Zea mays HOM05D005761 ORTHO05D007286 1.5e-59 233.0 146 71.2
HanXRQChr09g0275451 Helianthus annuus HOM05D005761 ORTHO05D007286 2.6e-59 232.3 156 69.9
Medtr5g011180 Medicago truncatula HOM05D005761 ORTHO05D007286 3.3e-59 231.9 160 70.0
VMungo0464G1667 Vigna mungo HOM05D005761 ORTHO05D007286 3.3e-59 231.9 156 73.7
ClCG09G001920 Citrullus lanatus HOM05D005761 ORTHO05D007286 4.4e-59 231.5 153 71.9
Lsat_1_v5_gn_4_103261 Lactuca sativa HOM05D005761 ORTHO05D007286 4.4e-59 231.5 154 70.1
FAN05G4602 Fragaria x ananassa HOM05D005761 ORTHO05D007286 5.7e-59 231.1 152 72.4
Sc12g0009490 Simmondsia chinensis HOM05D005761 ORTHO05D007286 5.7e-59 231.1 155 71.0
Cpa.g.sc37.42 Carica papaya HOM05D005761 ORTHO05D007286 7.5e-59 230.7 160 72.5
CsaV3_3G005910 Cucumis sativus L. HOM05D005761 ORTHO05D007286 7.5e-59 230.7 153 71.2
GSVIVG01017058001 Vitis vinifera HOM05D005761 ORTHO05D007286 9.7e-59 230.3 155 70.3
ClCG10G006430 Citrullus lanatus HOM05D005761 ORTHO05D007286 3.7e-58 228.4 141 75.9
TPR.G19588 Trifolium pratense HOM05D005761 ORTHO05D007286 3.7e-58 228.4 176 66.5
Oeu059462.1 Olea europaea HOM05D005761 ORTHO05D007286 4.8e-58 228.0 175 66.3
MELO3C016564.2 Cucumis melo HOM05D005761 ORTHO05D007286 6.3e-58 227.6 153 70.6
AUR62016504 Chenopodium quinoa HOM05D005761 ORTHO05D007286 8.2e-58 227.3 144 76.4
PGR102G0188 Punica granatum HOM05D005761 ORTHO05D007286 1.1e-57 226.9 158 70.3
TAR624G1072 Trochodendron aralioides HOM05D005761 ORTHO05D007286 1.8e-57 226.1 150 71.3
ECA232G2351 Erigeron canadensis HOM05D005761 ORTHO05D007286 3.1e-57 225.3 156 66.7
Rhsim09G0202300 Rhododendron simsii HOM05D005761 ORTHO05D007286 4.1e-57 224.9 155 71.6
Os02g0275100 Oryza sativa ssp. japonica HOM05D005761 ORTHO05D007286 5.3e-57 224.6 137 73.0
RcHm_v2.0_Chr2g0139101 Rosa chinensis HOM05D005761 ORTHO05D007286 1.2e-56 223.4 154 70.8
HPP92_024576 Vanilla planifolia HOM05D005761 ORTHO05D007286 4.5e-56 221.5 150 71.3
Aa31LG5G21060 Aethionema arabicum HOM05D000113 ORTHO05D001108 6.5e-55 217.6 141 73.8
Sp1g13540 Schrenkiella parvula HOM05D005761 ORTHO05D007286 2.5e-54 215.7 141 73.0
Thhalv10008971m.g Eutrema salsugineum HOM05D005761 ORTHO05D007286 7.2e-54 214.2 141 71.6
BcaB03g13070 Brassica carinata HOM05D005761 ORTHO05D007286 6.1e-53 211.1 141 70.9
CARHR015750 Cardamine hirsuta HOM05D005761 ORTHO05D007286 8.0e-53 210.7 141 72.3
Carub.0001s1498 Capsella rubella HOM05D005761 ORTHO05D007286 1.0e-52 210.3 141 71.6
A06p11220 Brassica napus HOM05D005761 ORTHO05D007286 2.3e-52 209.1 141 70.9
C05p13350 Brassica napus HOM05D005761 ORTHO05D007286 2.3e-52 209.1 141 70.9
BraA06t24302Z Brassica rapa HOM05D005761 ORTHO05D007286 2.3e-52 209.1 141 70.9
BolC5t30072H Brassica oleracea HOM05D005761 ORTHO05D007286 5.2e-52 208.0 141 70.2
BcaC07g38774 Brassica carinata HOM05D005761 ORTHO05D007286 1.5e-51 206.5 141 69.5
CANSAT56G0921 Cannabis sativa HOM05D005761 ORTHO05D007286 2.0e-51 206.1 157 66.2
AL1G27310 Arabidopsis lyrata HOM05D005761 ORTHO05D007286 5.7e-51 204.5 141 70.2
A08p31680 Brassica napus HOM05D005761 ORTHO05D007286 5.7e-51 204.5 141 69.5
BraA08t35090Z Brassica rapa HOM05D005761 ORTHO05D007286 5.7e-51 204.5 141 69.5
C08p17060 Brassica napus HOM05D000103 ORTHO05D000049 7.5e-51 204.1 141 68.8
BolC8t49332H Brassica oleracea HOM05D005761 ORTHO05D007286 7.5e-51 204.1 141 68.8
SalBow2G2609 Salvia bowleyana HOM05D005761 ORTHO05D007286 1.3e-50 203.4 193 56.0
AT1G15220 Arabidopsis thaliana HOM05D005761 ORTHO05D007286 1.8e-49 199.5 141 68.8
TAR636G0897 Trochodendron aralioides HOM05D005761 ORTHO05D007286 1.0e-47 193.7 132 68.2
Duzib160G0104 Durio zibethinus HOM05D005761 ORTHO05D007286 6.1e-45 184.5 140 67.9
SHI11001 Sapria himalayana HOM05D005761 ORTHO05D007286 8.0e-45 184.1 149 61.1
Actinidia32723 Actinidia chinensis HOM05D005761 ORTHO05D007286 3.0e-44 182.2 145 63.4
SEGI_40479 Sequoiadendron giganteum HOM05D005761 ORTHO05D007286 1.2e-43 180.3 118 68.6
Cfa014792 Carpinus fangiana HOM05D005761 ORTHO05D007286 3.8e-39 165.2 107 72.0
Glyma.07G019200 Glycine max HOM05D005761 ORTHO05D007286 1.6e-37 159.8 93 84.9
BcaC05g25451 Brassica carinata HOM05D005761 ORTHO05D007286 2.3e-36 156.0 104 73.1
HanXRQChr05g0136521 Helianthus annuus HOM05D005761 ORTHO05D007286 1.1e-33 147.1 93 73.1
Mapoly0033s0089 Marchantia polymorpha HOM05D005761 ORTHO05D007286 1.8e-33 146.4 128 53.9
Pp3c3_29950 Physcomitrium patens HOM05D005761 ORTHO05D007286 2.4e-33 146.0 148 51.4
HanXRQChr10g0301331 Helianthus annuus HOM05D005761 ORTHO05D007286 1.2e-29 133.7 87 72.4
Sed0020064 Sechium edule HOM05D005761 ORTHO05D007286 2.1e-29 132.9 98 66.3
CBR_g32010 Chara braunii HOM05D005761 ORTHO05D007286 2.0e-27 126.3 141 46.8
Sopen03g039470 Solanum pennellii HOM05D005761 ORTHO05D007286 1.7e-23 113.2 72 69.4
HanXRQChr11g0333491 Helianthus annuus HOM05D005761 ORTHO05D007286 1.6e-21 106.7 122 46.7
HanXRQChr08g0232791 Helianthus annuus HOM05D005761 ORTHO05D007286 4.4e-19 98.6 122 43.4
Rhsim08G0203300 Rhododendron simsii HOM05D005761 ORTHO05D007286 3.3e-14 82.4 48 79.2
Rhsim08G0224100 Rhododendron simsii HOM05D000414 ORTHO05D000276 4.0e-12 75.5 50 72.0


User provided reference genes

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