Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.22579 Avicennia marina HOM05D006504 ORTHO05D007867 1.0e-89 333.6 189 100.0
Migut.I01030 Erythranthe guttata HOM05D006504 ORTHO05D007867 1.9e-51 206.5 173 75.7
Sopen02g018660 Solanum pennellii HOM05D006504 ORTHO05D007867 1.5e-37 160.2 196 54.1
Solyc02g069520.2 Solanum lycopersicum HOM05D006504 ORTHO05D007867 2.2e-36 156.4 206 51.5
Hma1.2p1_0388F.1_g142400 Hydrangea macrophylla HOM05D006504 ORTHO05D007867 2.9e-36 156.0 181 58.6
CAN.G675.25 Capsicum annuum HOM05D006504 ORTHO05D007867 3.8e-36 155.6 201 54.2
Cc05_g02540 Coffea canephora HOM05D006504 ORTHO05D007867 3.8e-36 155.6 170 60.0
GSVIVG01016863001 Vitis vinifera HOM05D006504 ORTHO05D007867 3.8e-36 155.6 169 60.4
CSS0018438 Camellia sinensis var. sinensis HOM05D006504 ORTHO05D007867 6.4e-36 154.8 185 58.9
Eucgr.F03135 Eucalyptus grandis HOM05D006504 ORTHO05D007867 1.1e-35 154.1 196 54.6
Cpa.g.sc25.42 Carica papaya HOM05D006504 ORTHO05D007867 2.4e-35 152.9 180 57.2
Gohir.D05G137200 Gossypium hirsutum HOM05D006504 ORTHO05D007867 2.4e-35 152.9 173 59.5
Gorai.009G141600 Gossypium raimondii HOM05D006504 ORTHO05D007867 3.2e-35 152.5 173 59.5
Duzib235G1492 Durio zibethinus HOM05D006504 ORTHO05D007867 7.1e-35 151.4 164 59.1
Gohir.A05G135200 Gossypium hirsutum HOM05D006504 ORTHO05D007867 7.1e-35 151.4 173 59.0
Lsat_1_v5_gn_5_135100 Lactuca sativa HOM05D006504 ORTHO05D007867 1.2e-34 150.6 180 53.9
Ciclev10026403m.g Citrus clementina HOM05D006504 ORTHO05D007867 1.0e-33 147.5 178 56.7
Nn8g38840 Nelumbo nucifera HOM05D006504 ORTHO05D007867 1.0e-33 147.5 168 56.5
VMungo0331G1418 Vigna mungo HOM05D006504 ORTHO05D007867 1.0e-33 147.5 188 55.9
HanXRQChr12g0360501 Helianthus annuus HOM05D006504 ORTHO05D007867 1.7e-33 146.7 180 52.2
FAN02G0681 Fragaria x ananassa HOM05D006504 ORTHO05D007867 2.3e-33 146.4 164 55.5
TWI31G0577 Tripterygium wilfordii HOM05D006504 ORTHO05D007867 3.0e-33 146.0 176 57.4
Glyma.08G192500 Glycine max HOM05D006504 ORTHO05D007867 5.1e-33 145.2 177 58.2
FAN09G0296 Fragaria x ananassa HOM05D006504 ORTHO05D007867 6.6e-33 144.8 182 46.7
RcHm_v2.0_Chr2g0143361 Rosa chinensis HOM05D006504 ORTHO05D007867 6.6e-33 144.8 177 55.4
SGA_v2.0_scaffold127G34055 Striga asiatica HOM05D006504 ORTHO05D007867 6.6e-33 144.8 155 67.1
Thecc.06G112500 Theobroma cacao HOM05D006504 ORTHO05D007867 8.7e-33 144.4 164 57.3
Prupe.3G049000 Prunus persica HOM05D006504 ORTHO05D007867 3.3e-32 142.5 182 53.3
PGR102G0591 Punica granatum HOM05D006504 ORTHO05D007867 3.3e-32 142.5 184 54.3
Glyma.07G009300 Glycine max HOM05D006504 ORTHO05D007867 4.3e-32 142.1 194 52.6
Potri.003G037200 Populus trichocarpa HOM05D006504 ORTHO05D007867 4.3e-32 142.1 183 55.2
FAN14G5793 Fragaria x ananassa HOM05D006504 ORTHO05D007867 5.6e-32 141.7 176 55.1
Manes.11G025900 Manihot esculenta HOM05D006504 ORTHO05D007867 5.6e-32 141.7 185 54.1
FvH4_6g33500 Fragaria vesca HOM05D006504 ORTHO05D007867 9.6e-32 141.0 176 55.1
CiPaw.01G224400 Carya illinoinensis HOM05D006504 ORTHO05D007867 8.1e-31 137.9 94 71.3
Aqoxy5G00309 Aquilegia oxysepala HOM05D006504 ORTHO05D007867 1.1e-30 137.5 91 74.7
Manes.04G140200 Manihot esculenta HOM05D006504 ORTHO05D007867 1.1e-30 137.5 183 51.9
TPR.G37598 Trifolium pratense HOM05D006504 ORTHO05D007867 1.8e-30 136.7 188 52.1
Atru.chr1.3757 Acer truncatum HOM05D006504 ORTHO05D007867 4.0e-30 135.6 193 52.3
TAR383G0025 Trochodendron aralioides HOM05D006504 ORTHO05D007867 6.9e-30 134.8 169 56.8
CsaV3_3G043850 Cucumis sativus L. HOM05D006504 ORTHO05D007867 2.0e-29 133.3 94 69.1
Lj3g0009120 Lotus japonicus HOM05D006504 ORTHO05D007867 2.0e-29 133.3 195 51.3
Lalb_Chr25g0280741 Lupinus albus HOM05D006504 ORTHO05D007867 2.6e-29 132.9 94 69.1
Lj5A44T119 Lonicera japonica HOM05D006504 ORTHO05D007867 4.5e-29 132.1 131 55.0
HPP92_023888 Vanilla planifolia HOM05D006504 ORTHO05D007867 4.5e-29 132.1 164 53.0
Peaxi162Scf00195g00313 Petunia axillaris HOM05D006504 ORTHO05D007867 2.2e-28 129.8 201 48.8
arahy.Tifrunner.gnm1.ann1.2CYW67 Arachis hypogaea HOM05D006504 ORTHO05D007867 3.8e-28 129.0 211 46.9
QL05p000665 Quercus lobata HOM05D006504 ORTHO05D007867 3.8e-28 129.0 94 68.1
BraA08t32155Z Brassica rapa HOM05D006504 ORTHO05D007867 6.4e-28 128.3 233 45.5
ECA234G1551 Erigeron canadensis HOM05D000001 ORTHO05D009948 6.4e-28 128.3 95 64.2
Gorai.011G064600 Gossypium raimondii HOM05D006504 ORTHO05D007867 6.4e-28 128.3 164 47.0
QL05p000757 Quercus lobata HOM05D006504 ORTHO05D007867 8.4e-28 127.9 94 67.0
THA.LOC104822636 Tarenaya hassleriana HOM05D006504 ORTHO05D007867 1.4e-27 127.1 219 40.6
AL1G63070 Arabidopsis lyrata HOM05D006504 ORTHO05D007867 1.9e-27 126.7 223 39.5
BcaB04g17003 Brassica carinata HOM05D006504 ORTHO05D007867 2.4e-27 126.3 239 43.5
Gohir.D10G060350 Gossypium hirsutum HOM05D006504 ORTHO05D007867 3.2e-27 125.9 94 67.0
PSO210G7829 Papaver somniferum HOM05D006504 ORTHO05D007867 3.2e-27 125.9 91 68.1
MD09G1192700 Malus domestica HOM05D006504 ORTHO05D007867 4.2e-27 125.6 158 55.7
PSO210G6889 Papaver somniferum HOM05D006504 ORTHO05D007867 4.2e-27 125.6 91 68.1
Medtr8g017180 Medicago truncatula HOM05D006504 ORTHO05D007867 5.4e-27 125.2 94 67.0
CDE04G1380 Ceratophyllum demersum HOM05D006504 ORTHO05D007867 9.3e-27 124.4 170 46.5
Sp1g40740 Schrenkiella parvula HOM05D006504 ORTHO05D007867 9.3e-27 124.4 234 42.3
arahy.Tifrunner.gnm1.ann1.S1QT98 Arachis hypogaea HOM05D006504 ORTHO05D007867 1.6e-26 123.6 219 44.7
Aa31LG10G870 Aethionema arabicum HOM05D006504 ORTHO05D007867 2.1e-26 123.2 246 41.5
AT1G55080 Arabidopsis thaliana HOM05D006504 ORTHO05D007867 2.1e-26 123.2 237 38.0
Sc12g0010270 Simmondsia chinensis HOM05D006504 ORTHO05D007867 2.1e-26 123.2 84 73.8
Nn8g38837 Nelumbo nucifera HOM05D006504 ORTHO05D007867 6.0e-26 121.7 150 54.7
Psat4g188440 Pisum sativum HOM05D006504 ORTHO05D007867 6.0e-26 121.7 94 63.8
Ah.08g216230 Amaranthus hybridus HOM05D006504 ORTHO05D007867 7.9e-26 121.3 88 64.8
FAN21G2275 Fragaria x ananassa HOM05D006504 ORTHO05D007867 7.9e-26 121.3 174 51.7
CARHR044670 Cardamine hirsuta HOM05D006504 ORTHO05D007867 1.0e-25 120.9 223 39.0
COL.COLO4_30670 Corchorus olitorius HOM05D006504 ORTHO05D007867 1.5e-24 117.1 86 68.6
PGSC0003DMG400021202 Solanum tuberosum HOM05D006504 ORTHO05D007867 1.5e-24 117.1 89 66.3
ATR0661G108 Amborella trichopoda HOM05D006504 ORTHO05D007867 1.9e-24 116.7 94 60.6
Carub.0001s4357 Capsella rubella HOM05D006504 ORTHO05D007867 1.9e-24 116.7 232 40.9
Cfa003580 Carpinus fangiana HOM05D006504 ORTHO05D007867 1.9e-24 116.7 85 68.2
HPP92_023833 Vanilla planifolia HOM05D006504 ORTHO05D007867 1.9e-24 116.7 89 60.7
Rhsim12G0206400 Rhododendron simsii HOM05D006504 ORTHO05D007867 2.5e-24 116.3 211 47.4
arahy.Tifrunner.gnm1.ann1.Y1EG1J Arachis hypogaea HOM05D006504 ORTHO05D007867 4.3e-24 115.5 83 68.7
BcaC01g01455 Brassica carinata HOM05D006504 ORTHO05D007867 5.6e-24 115.2 249 39.8
BolC3t21536H Brassica oleracea HOM05D006504 ORTHO05D007867 5.6e-24 115.2 233 42.1
Nn5g26799 Nelumbo nucifera HOM05D006504 ORTHO05D007867 9.6e-24 114.4 150 52.7
MELO3C030574.2 Cucumis melo HOM05D006504 ORTHO05D007867 2.1e-23 113.2 82 69.5
Os01g0501000 Oryza sativa ssp. japonica HOM05D006504 ORTHO05D007867 3.7e-23 112.5 149 53.7
arahy.Tifrunner.gnm1.ann1.IBA4C6 Arachis hypogaea HOM05D006504 ORTHO05D007867 1.4e-22 110.5 85 65.9
A08p01030 Brassica napus HOM05D001264 ORTHO05D007867 2.4e-22 109.8 216 44.4
CDE06G0601 Ceratophyllum demersum HOM05D006504 ORTHO05D007867 2.2e-20 103.2 164 43.3
ATR0800G060 Amborella trichopoda HOM05D006504 ORTHO05D007867 3.8e-20 102.4 76 67.1
C03p92210 Brassica napus HOM05D001264 ORTHO05D007867 8.4e-20 101.3 235 39.6
BcaB03g13872 Brassica carinata HOM05D006504 ORTHO05D007867 2.5e-19 99.8 94 55.3
BolC6t36770H Brassica oleracea HOM05D006504 ORTHO05D007867 9.3e-19 97.8 95 58.9
BcaC06g35444 Brassica carinata HOM05D006504 ORTHO05D007867 1.2e-18 97.4 94 53.2
C07p16100 Brassica napus HOM05D006504 ORTHO05D007867 1.2e-18 97.4 94 53.2
BolC7t42095H Brassica oleracea HOM05D006504 ORTHO05D007867 1.2e-18 97.4 94 53.2
A07p10460 Brassica napus HOM05D006504 ORTHO05D007867 2.1e-18 96.7 91 52.7
BraA07t28846Z Brassica rapa HOM05D006504 ORTHO05D007867 2.1e-18 96.7 91 52.7
BraA05t20659Z Brassica rapa HOM05D006504 ORTHO05D007867 4.6e-18 95.5 95 57.9
Carub.0001s2784 Capsella rubella HOM05D006504 ORTHO05D007867 3.0e-17 92.8 95 50.5
SEGI_28258 Sequoiadendron giganteum HOM05D006504 ORTHO05D007867 8.7e-17 91.3 91 52.7
QL05p000679 Quercus lobata HOM05D006504 ORTHO05D007867 1.1e-16 90.9 87 60.9
QL05p000687 Quercus lobata HOM05D006504 ORTHO05D007867 1.1e-16 90.9 87 60.9
Mapoly0004s0244 Marchantia polymorpha HOM05D006504 ORTHO05D007867 1.5e-16 90.5 92 51.1
Gohir.A10G058600 Gossypium hirsutum HOM05D006504 ORTHO05D007867 1.9e-16 90.1 128 43.8
TPR.G19289 Trifolium pratense HOM05D006504 ORTHO05D007867 4.3e-16 89.0 179 45.3
Zm00001eb066180 Zea mays HOM05D006504 ORTHO05D007867 8.2e-15 84.7 94 50.0
C06p15780 Brassica napus HOM05D001264 ORTHO05D001167 1.4e-14 84.0 78 62.8
A05p17670 Brassica napus HOM05D006504 ORTHO05D007867 2.4e-14 83.2 77 59.7
ClCG07G013760 Citrullus lanatus HOM05D006504 ORTHO05D007867 3.1e-14 82.8 81 56.8
Nitab4.5_0002964g0020 Nicotiana tabacum HOM05D006504 ORTHO05D007867 4.5e-13 79.0 133 50.4
BcaC08g44177 Brassica carinata HOM05D001264 ORTHO05D001167 7.6e-13 78.2 78 60.3
SMO358G0601 Selaginella moellendorffii HOM05D006504 ORTHO05D007867 2.9e-12 76.3 124 41.9
Sp3g12060 Schrenkiella parvula HOM05D006504 ORTHO05D007867 3.8e-12 75.9 77 51.9
vmacro17023 Vaccinium macrocarpon HOM05D006504 ORTHO05D007867 4.9e-12 75.5 50 72.0
Haze_15959 Corylus avellana HOM05D006504 ORTHO05D007867 4.2e-11 72.4 47 72.3
Nitab4.5_0001219g0120 Nicotiana tabacum HOM05D006504 ORTHO05D007867 1.6e-10 70.5 89 47.2
SalBow6G4228 Salvia bowleyana HOM05D006504 ORTHO05D007867 1.8e-09 67.0 35 88.6
SalBow6G4685 Salvia bowleyana HOM05D006504 ORTHO05D007867 1.8e-09 67.0 35 88.6
SGA_v2.0_scaffold464G52010 Striga asiatica HOM05D006504 ORTHO05D007867 1.8e-09 67.0 92 52.2
DCAR_007625 Daucus carota HOM05D006504 ORTHO05D007867 1.5e-08 63.9 87 41.4
Thhalv10022201m.g Eutrema salsugineum HOM05D006504 ORTHO05D007867 9.7e-08 61.2 73 45.2
unitig_748.g8021 Utricularia gibba HOM05D000360 ORTHO05D000234 9.7e-08 61.2 40 67.5
AL1G43430 Arabidopsis lyrata HOM05D006504 ORTHO05D007867 2.8e-07 59.7 112 45.5
Pp3c21_4920 Physcomitrium patens HOM05D006504 ORTHO05D007867 1.1e-06 57.8 89 37.1
AT1G29580 Arabidopsis thaliana HOM05D006504 ORTHO05D007867 4.1e-06 55.8 89 40.4


User provided reference genes

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