Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.22347 Avicennia marina HOM05D001081 ORTHO05D007101 1.1e-93 346.7 177 100.0
SGA_v2.0_scaffold19G08564 Striga asiatica HOM05D001081 ORTHO05D007101 8.0e-65 250.8 136 92.6
SGA_v2.0_scaffold25G11207 Striga asiatica HOM05D001081 ORTHO05D007101 4.4e-63 245.0 134 91.0
unitig_32.g11232 Utricularia gibba HOM05D001081 ORTHO05D007101 5.4e-61 238.0 131 90.1
Migut.N03179 Erythranthe guttata HOM05D001081 ORTHO05D007101 3.5e-60 235.3 134 87.3
SalBow6G0310 Salvia bowleyana HOM05D001081 ORTHO05D007101 1.5e-58 229.9 134 85.8
PGSC0003DMG401028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 3.6e-57 225.3 134 82.1
PGSC0003DMG402028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 3.6e-57 225.3 134 82.1
Nitab4.5_0004146g0010 Nicotiana tabacum HOM05D001081 ORTHO05D007101 4.7e-57 224.9 134 83.6
Peaxi162Scf00071g00017 Petunia axillaris HOM05D001081 ORTHO05D007101 6.2e-57 224.6 134 84.3
Nitab4.5_0004513g0030 Nicotiana tabacum HOM05D001081 ORTHO05D007101 2.3e-56 222.6 134 82.1
CAN.G411.51 Capsicum annuum HOM05D001081 ORTHO05D007101 5.2e-56 221.5 134 79.9
Cc10_g01340 Coffea canephora HOM05D001081 ORTHO05D007101 6.8e-56 221.1 135 81.5
MSTRG.25269 Avicennia marina HOM05D001081 ORTHO05D007101 8.9e-56 220.7 177 68.4
Lj4P697T30 Lonicera japonica HOM05D001081 ORTHO05D007101 1.3e-54 216.9 129 81.4
Sopen12g021900 Solanum pennellii HOM05D001081 ORTHO05D007101 3.7e-54 215.3 130 80.0
Sopen12g021840 Solanum pennellii HOM05D001081 ORTHO05D007101 4.9e-54 214.9 130 79.2
Ah.03g146510 Amaranthus hybridus HOM05D001081 ORTHO05D007101 2.4e-53 212.6 128 79.7
ECA238G0006 Erigeron canadensis HOM05D001081 ORTHO05D007101 2.4e-53 212.6 130 79.2
HanXRQChr14g0429651 Helianthus annuus HOM05D001081 ORTHO05D007101 2.4e-53 212.6 129 79.8
EL10Ac1g00785 Beta vulgaris HOM05D001081 ORTHO05D007101 4.1e-53 211.8 129 79.8
Cfa016232 Carpinus fangiana HOM05D001081 ORTHO05D007101 9.2e-53 210.7 124 81.5
Ah.05g173160 Amaranthus hybridus HOM05D001081 ORTHO05D007101 1.2e-52 210.3 128 78.9
Ciclev10022846m.g Citrus clementina HOM05D001081 ORTHO05D007101 1.2e-52 210.3 129 80.6
TAR625G0271 Trochodendron aralioides HOM05D001081 ORTHO05D007101 1.2e-52 210.3 128 81.2
Solyc12g042700.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 2.1e-52 209.5 136 75.0
QL09p008866 Quercus lobata HOM05D001081 ORTHO05D007101 2.7e-52 209.1 133 77.4
QL09p009112 Quercus lobata HOM05D001081 ORTHO05D007101 2.7e-52 209.1 133 77.4
Sed0012325 Sechium edule HOM05D001081 ORTHO05D007101 2.7e-52 209.1 124 81.5
Aqoxy3G01434 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 4.6e-52 208.4 126 81.7
COL.COLO4_16767 Corchorus olitorius HOM05D001081 ORTHO05D007101 6.0e-52 208.0 131 77.9
Nn3g16671 Nelumbo nucifera HOM05D001081 ORTHO05D007101 6.0e-52 208.0 126 82.5
Nn6g34886 Nelumbo nucifera HOM05D001081 ORTHO05D007101 6.0e-52 208.0 126 81.7
CANSAT21G1508 Cannabis sativa HOM05D001081 ORTHO05D007101 7.8e-52 207.6 128 81.2
vmacro12512 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 7.8e-52 207.6 135 74.8
Cpa.g.sc3.88 Carica papaya HOM05D001081 ORTHO05D007101 1.0e-51 207.2 124 80.6
CiPaw.06G046200 Carya illinoinensis HOM05D001081 ORTHO05D007101 1.0e-51 207.2 124 80.6
GSVIVG01009969001 Vitis vinifera HOM05D001081 ORTHO05D007101 1.0e-51 207.2 127 78.7
Duzib068G1165 Durio zibethinus HOM05D001081 ORTHO05D007101 1.7e-51 206.5 129 79.1
Aqoxy4G03008 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 2.3e-51 206.1 126 80.2
Haze_00208 Corylus avellana HOM05D001081 ORTHO05D004708 3.0e-51 205.7 127 78.0
Lsat_1_v5_gn_2_7800 Lactuca sativa HOM05D000015 ORTHO05D002445 3.0e-51 205.7 130 77.7
Atru.chr12.2201 Acer truncatum HOM05D001081 ORTHO05D007101 3.9e-51 205.3 130 76.9
FAN06G0656 Fragaria x ananassa HOM05D001081 ORTHO05D007101 3.9e-51 205.3 131 78.6
Duzib205G0894 Durio zibethinus HOM05D001081 ORTHO05D007101 5.1e-51 204.9 129 78.3
Psat7g080240 Pisum sativum HOM05D001081 ORTHO05D007101 5.1e-51 204.9 128 78.9
Gohir.A05G100100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 8.6e-51 204.1 129 77.5
PGR083G2221 Punica granatum HOM05D001081 ORTHO05D007101 8.6e-51 204.1 124 79.8
RcHm_v2.0_Chr1g0380551 Rosa chinensis HOM05D001081 ORTHO05D007101 8.6e-51 204.1 128 78.9
Hund21005 Selenicereus undatus HOM05D001081 ORTHO05D007101 1.1e-50 203.8 131 75.6
FvH4_7g31560 Fragaria vesca HOM05D001081 ORTHO05D007101 1.5e-50 203.4 128 79.7
FAN06G3917 Fragaria x ananassa HOM05D001081 ORTHO05D007101 2.5e-50 202.6 131 77.9
Sed0024875 Sechium edule HOM05D001081 ORTHO05D007101 2.5e-50 202.6 124 80.6
Eucgr.F01156 Eucalyptus grandis HOM05D001081 ORTHO05D007101 3.3e-50 202.2 124 78.2
Glyma.05G143900 Glycine max HOM05D001081 ORTHO05D007101 3.3e-50 202.2 128 76.6
Gohir.D05G099900 Gossypium hirsutum HOM05D001081 ORTHO05D007101 3.3e-50 202.2 129 76.7
Gorai.009G103900 Gossypium raimondii HOM05D001081 ORTHO05D007101 3.3e-50 202.2 129 76.7
Sc13g0009920 Simmondsia chinensis HOM05D001081 ORTHO05D007101 3.3e-50 202.2 131 76.3
Thecc.03G199300 Theobroma cacao HOM05D001081 ORTHO05D007101 3.3e-50 202.2 129 76.7
FAN10G3364 Fragaria x ananassa HOM05D001081 ORTHO05D007101 4.3e-50 201.8 128 78.9
FAN10G4231 Fragaria x ananassa HOM05D001081 ORTHO05D007101 4.3e-50 201.8 128 78.9
AUR62023429 Chenopodium quinoa HOM05D001081 ORTHO05D007101 5.6e-50 201.4 124 79.0
VMungo0251G0734 Vigna mungo HOM05D001081 ORTHO05D007101 5.6e-50 201.4 128 76.6
Ca_18157_v3 Cicer arietinum L. HOM05D001081 ORTHO05D007101 7.3e-50 201.1 128 75.8
FAN01G2588 Fragaria x ananassa HOM05D001081 ORTHO05D007101 7.3e-50 201.1 134 76.1
Phvul.001G061700 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 9.6e-50 200.7 128 75.8
AUR62018052 Chenopodium quinoa HOM05D001081 ORTHO05D007101 1.2e-49 200.3 124 78.2
Phvul.003G125501 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 1.2e-49 200.3 128 75.8
TWI74G0183 Tripterygium wilfordii HOM05D001081 ORTHO05D007101 1.2e-49 200.3 129 76.0
vmacro07565 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 1.2e-49 200.3 137 71.5
CDE05G3015 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 1.6e-49 199.9 125 76.0
Glyma.08G100200 Glycine max HOM05D001081 ORTHO05D007101 1.6e-49 199.9 128 75.8
TPR.G9557 Trifolium pratense HOM05D001081 ORTHO05D007101 2.8e-49 199.1 128 76.6
THA.LOC104798899 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 3.6e-49 198.7 129 75.2
CsaV3_3G019840 Cucumis sativus L. HOM05D001081 ORTHO05D007101 4.7e-49 198.4 118 81.4
Lj5g0017992 Lotus japonicus HOM05D001081 ORTHO05D007101 4.7e-49 198.4 131 75.6
Lalb_Chr13g0294051 Lupinus albus HOM05D001081 ORTHO05D007101 4.7e-49 198.4 129 74.4
MELO3C008496.2 Cucumis melo HOM05D001081 ORTHO05D007101 6.2e-49 198.0 118 81.4
Lj4g0009093 Lotus japonicus HOM05D001081 ORTHO05D007101 6.2e-49 198.0 128 76.6
MD07G1288300 Malus domestica HOM05D001081 ORTHO05D007101 6.2e-49 198.0 126 74.6
Medtr8g079498 Medicago truncatula HOM05D001081 ORTHO05D007101 1.8e-48 196.4 125 77.6
Atru.chr9.478 Acer truncatum HOM05D001081 ORTHO05D007101 2.4e-48 196.1 130 73.8
FAN03G0412 Fragaria x ananassa HOM05D001081 ORTHO05D007101 3.1e-48 195.7 128 77.3
Manes.18G126800 Manihot esculenta HOM05D001081 ORTHO05D007101 3.1e-48 195.7 128 75.8
Prupe.2G309800 Prunus persica HOM05D001081 ORTHO05D007101 3.1e-48 195.7 124 75.8
PSO541G4732 Papaver somniferum HOM05D001081 ORTHO05D007101 4.0e-48 195.3 129 75.2
PSO675G3624 Papaver somniferum HOM05D001081 ORTHO05D007101 4.0e-48 195.3 129 75.2
THA.LOC104823111 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 8.9e-48 194.1 129 72.9
TAR381G1700 Trochodendron aralioides HOM05D001081 ORTHO05D007101 1.2e-47 193.7 126 73.8
Potri.015G012700 Populus trichocarpa HOM05D001081 ORTHO05D007101 1.5e-47 193.4 124 75.0
DCAR_013886 Daucus carota HOM05D001081 ORTHO05D007101 2.0e-47 193.0 129 72.1
Thhalv10026223m.g Eutrema salsugineum HOM05D001081 ORTHO05D007101 4.4e-47 191.8 128 73.4
MBI07_g23667_MAGBIO Magnolia biondii HOM05D001081 ORTHO05D007101 4.4e-47 191.8 127 74.8
Potri.012G015800 Populus trichocarpa HOM05D001081 ORTHO05D007101 7.6e-47 191.0 124 74.2
A01p13390 Brassica napus HOM05D001081 ORTHO05D007101 9.9e-47 190.7 126 73.8
BraA01t01281Z Brassica rapa HOM05D001081 ORTHO05D007101 9.9e-47 190.7 126 73.8
Carub.0007s1934 Capsella rubella HOM05D001081 ORTHO05D007101 1.3e-46 190.3 126 73.0
AL7G31700 Arabidopsis lyrata HOM05D001081 ORTHO05D007101 1.7e-46 189.9 126 73.8
BcaC09g51172 Brassica carinata HOM05D001081 ORTHO05D007101 2.9e-46 189.1 126 73.8
BcaNung05107 Brassica carinata HOM05D001081 ORTHO05D007101 2.9e-46 189.1 126 73.8
BolC1t01570H Brassica oleracea HOM05D001081 ORTHO05D007101 2.9e-46 189.1 126 73.8
AT4G22000 Arabidopsis thaliana HOM05D001081 ORTHO05D007101 6.4e-46 188.0 126 73.0
C01p16100 Brassica napus HOM05D001081 ORTHO05D007101 6.4e-46 188.0 126 73.0
Sp7g20190 Schrenkiella parvula HOM05D001081 ORTHO05D007101 6.4e-46 188.0 126 73.0
Os05g0114600 Oryza sativa ssp. japonica HOM05D001081 ORTHO05D007101 5.4e-45 184.9 124 72.6
Zm00001eb355650 Zea mays HOM05D001081 ORTHO05D007101 1.2e-44 183.7 124 74.2
CARHR228810 Cardamine hirsuta HOM05D001081 ORTHO05D007101 2.7e-44 182.6 127 71.7
Aa31LG6G3950 Aethionema arabicum HOM05D001081 ORTHO05D007101 4.6e-44 181.8 129 70.5
CDE11G0170 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 8.7e-43 177.6 125 72.0
SHI02421 Sapria himalayana HOM05D006156 ORTHO05D007101 1.9e-42 176.4 124 67.7
HPP92_008968 Vanilla planifolia HOM05D001081 ORTHO05D007101 1.4e-40 170.2 144 59.7
AUR62013725 Chenopodium quinoa HOM05D001081 ORTHO05D007101 3.1e-40 169.1 103 78.6
SEGI_15379 Sequoiadendron giganteum HOM05D001081 ORTHO05D007101 6.4e-38 161.4 129 67.4
ATR1134G096 Amborella trichopoda HOM05D001081 ORTHO05D007101 3.5e-36 155.6 116 66.4
BcaB03g11721 Brassica carinata HOM05D001081 ORTHO05D007101 4.8e-33 145.2 112 65.2
Actinidia17007 Actinidia chinensis HOM05D001081 ORTHO05D007101 6.2e-33 144.8 82 81.7
ClCG05G008950 Citrullus lanatus HOM05D001081 ORTHO05D007101 1.9e-29 133.3 84 78.6
CSS0017659 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 1.2e-28 130.6 82 76.8
Mapoly0012s0096 Marchantia polymorpha HOM05D001081 ORTHO05D007101 1.6e-28 130.2 102 63.7
Solyc12g042720.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 2.7e-28 129.4 86 74.4
Dinv31879 Davidia involucrata HOM05D001081 ORTHO05D007101 9.6e-26 120.9 79 75.9
Pp3c15_6340 Physcomitrium patens HOM05D001081 ORTHO05D007101 1.8e-24 116.7 89 66.3
SMO356G0374 Selaginella moellendorffii HOM05D001081 ORTHO05D007101 3.1e-24 115.9 88 60.2
Gorai.006G039100 Gossypium raimondii HOM05D001081 ORTHO05D007101 3.8e-22 109.0 129 51.2
Nitab4.5_0001077g0030 Nicotiana tabacum HOM05D012963 ORTHO05D007101 9.6e-18 94.4 82 54.9
Gohir.A09G033580 Gossypium hirsutum HOM05D001081 ORTHO05D007101 8.2e-17 91.3 69 63.8
Gohir.D09G034100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 2.4e-16 89.7 69 63.8
CSS0023065 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 4.1e-16 89.0 61 72.1
CSS0034162 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 2.9e-14 82.8 56 73.2
CBR_g8977 Chara braunii HOM05D001081 ORTHO05D007101 1.9e-13 80.1 97 45.4
Zm00001eb266390 Zea mays HOM05D001081 ORTHO05D007101 1.0e-11 74.3 112 44.6
arahy.Tifrunner.gnm1.ann1.EUX55C Arachis hypogaea HOM05D001081 ORTHO05D007101 3.0e-11 72.8 54 70.4
Actinidia15449 Actinidia chinensis HOM05D001081 ORTHO05D007101 4.3e-10 68.9 38 86.8
Nitab4.5_0011266g0010 Nicotiana tabacum HOM05D002996 ORTHO05D025899 2.2e-09 66.6 60 63.3
DCAR_016735 Daucus carota HOM05D001081 ORTHO05D007101 2.4e-08 63.2 59 47.5
Nitab4.5_0005166g0030 Nicotiana tabacum HOM05D001081 ORTHO05D025899 5.3e-08 62.0 60 60.0
Nitab4.5_0008435g0040 Nicotiana tabacum HOM05D002996 ORTHO05D025899 9.0e-08 61.2 60 60.0
Nitab4.5_0026266g0010 Nicotiana tabacum HOM05D002996 ORTHO05D025899 9.0e-08 61.2 60 61.7


User provided reference genes

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