Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.22345 Avicennia marina HOM05D004095 ORTHO05D003197 1.9e-162 575.9 315 100.0
MSTRG.1174 Avicennia marina HOM05D004095 ORTHO05D003197 5.8e-58 228.8 342 52.0
MSTRG.25264 Avicennia marina HOM05D004095 ORTHO05D003197 9.0e-51 204.9 355 45.9
Oeu061977.1 Olea europaea HOM05D004095 ORTHO05D003197 1.8e-46 190.7 346 44.5
SalBow7G2790 Salvia bowleyana HOM05D004095 ORTHO05D003197 1.2e-39 167.9 380 41.1
SGA_v2.0_scaffold11G05941 Striga asiatica HOM05D004095 ORTHO05D003197 2.2e-36 157.1 316 41.5
SGA_v2.0_scaffold19G08554 Striga asiatica HOM05D004095 ORTHO05D003197 1.2e-34 151.4 352 40.6
CSS0006390 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 3.8e-33 146.4 334 38.6
CAN.G311.49 Capsicum annuum HOM05D004095 ORTHO05D003197 5.0e-33 146.0 321 40.5
CSS0032179 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 6.5e-33 145.6 334 38.3
Oeu026642.1 Olea europaea HOM05D004095 ORTHO05D003197 8.5e-33 145.2 394 35.5
unitig_749.g13901 Utricularia gibba HOM05D004095 ORTHO05D003197 1.1e-32 144.8 329 42.2
Cc10_g01420 Coffea canephora HOM05D004095 ORTHO05D003197 2.5e-32 143.7 333 40.5
Dinv31870 Davidia involucrata HOM05D004095 ORTHO05D003197 5.5e-32 142.5 339 42.8
Oeu007365.1 Olea europaea HOM05D004095 ORTHO05D003197 5.5e-32 142.5 241 38.2
Migut.C00862 Erythranthe guttata HOM05D004095 ORTHO05D003197 1.2e-31 141.4 367 39.2
Cfa007004 Carpinus fangiana HOM05D004095 ORTHO05D003197 3.6e-31 139.8 330 37.0
PGSC0003DMG400009946 Solanum tuberosum HOM05D004095 ORTHO05D003197 1.4e-30 137.9 334 39.5
Lj4A21T58 Lonicera japonica HOM05D004095 ORTHO05D003197 3.0e-30 136.7 366 39.6
Peaxi162Scf00860g00422 Petunia axillaris HOM05D004095 ORTHO05D003197 8.8e-30 135.2 322 41.9
Nn6g31993 Nelumbo nucifera HOM05D004095 ORTHO05D003197 1.5e-29 134.4 333 37.5
Solyc04g081730.3 Solanum lycopersicum HOM05D004095 ORTHO05D003197 4.8e-28 129.4 332 38.0
Sopen04g035350 Solanum pennellii HOM05D004095 ORTHO05D003197 1.8e-27 127.5 331 37.8
TWI12G1115 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 9.1e-27 125.2 336 37.2
CiPaw.07G146700 Carya illinoinensis HOM05D004095 ORTHO05D003197 1.2e-26 124.8 334 37.4
Gorai.003G007900 Gossypium raimondii HOM05D004095 ORTHO05D003197 1.5e-26 124.4 333 36.0
Nitab4.5_0006505g0050 Nicotiana tabacum HOM05D004095 ORTHO05D003197 1.5e-26 124.4 370 38.1
TAR376G0784 Trochodendron aralioides HOM05D004095 ORTHO05D003197 1.5e-26 124.4 324 34.3
Hund01666 Selenicereus undatus HOM05D004095 ORTHO05D003197 2.6e-26 123.6 366 35.8
Gohir.D03G007700 Gossypium hirsutum HOM05D004095 ORTHO05D003197 3.8e-25 119.8 335 36.7
Eucgr.I02328 Eucalyptus grandis HOM05D004095 ORTHO05D003197 1.1e-24 118.2 333 33.3
Duzib187G0006 Durio zibethinus HOM05D004095 ORTHO05D003197 3.2e-24 116.7 337 37.7
Gohir.A02G172400 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.6e-23 114.4 335 35.8
Lj4A799T84 Lonicera japonica HOM05D004095 ORTHO05D003197 2.1e-23 114.0 317 38.8
COL.COLO4_22466 Corchorus olitorius HOM05D004095 ORTHO05D003197 4.7e-23 112.8 335 31.9
CAN.G1517.6 Capsicum annuum HOM05D004095 ORTHO05D003197 1.4e-22 111.3 321 37.4
arahy.Tifrunner.gnm1.ann1.I59WU7 Arachis hypogaea HOM05D004095 ORTHO05D003197 1.5e-21 107.8 328 36.0
Lalb_Chr08g0246191 Lupinus albus HOM05D004095 ORTHO05D003197 1.5e-21 107.8 332 37.7
TAR628G1526 Trochodendron aralioides HOM05D004095 ORTHO05D003197 2.0e-21 107.5 378 32.5
Migut.O00908 Erythranthe guttata HOM05D004095 ORTHO05D003197 2.6e-21 107.1 316 29.1
Migut.N03174 Erythranthe guttata HOM05D004095 ORTHO05D003197 5.7e-21 105.9 316 30.1
AUR62040566 Chenopodium quinoa HOM05D004095 ORTHO05D003197 1.3e-20 104.8 354 30.5
Potri.002G019200 Populus trichocarpa HOM05D004095 ORTHO05D003197 1.3e-20 104.8 334 32.3
Duzib147G0922 Durio zibethinus HOM05D004095 ORTHO05D003197 2.8e-20 103.6 344 35.2
Duzib264G0091 Durio zibethinus HOM05D004095 ORTHO05D003197 2.8e-20 103.6 336 36.0
TAR381G0731 Trochodendron aralioides HOM05D004095 ORTHO05D003197 2.8e-20 103.6 337 33.5
MELO3C011353.2 Cucumis melo HOM05D004095 ORTHO05D003197 3.7e-20 103.2 344 36.9
ClCG08G014140 Citrullus lanatus HOM05D004095 ORTHO05D003197 4.8e-20 102.8 348 35.9
Manes.18G010907 Manihot esculenta HOM05D004095 ORTHO05D003197 6.3e-20 102.4 336 32.4
arahy.Tifrunner.gnm1.ann1.VNIF6J Arachis hypogaea HOM05D004095 ORTHO05D003197 8.2e-20 102.1 332 36.7
PSO675G0587 Papaver somniferum HOM05D004095 ORTHO05D003197 1.1e-19 101.7 329 35.9
Haze_03728 Corylus avellana HOM05D004095 ORTHO05D003197 1.4e-19 101.3 261 32.2
Hma1.2p1_0023F.1_g015650 Hydrangea macrophylla HOM05D004095 ORTHO05D003197 1.4e-19 101.3 238 32.4
AUR62041467 Chenopodium quinoa HOM05D004095 ORTHO05D003197 1.2e-18 98.2 382 33.0
Sc15g0004790 Simmondsia chinensis HOM05D004095 ORTHO05D003197 1.2e-18 98.2 357 34.7
CsaV3_2G024280 Cucumis sativus L. HOM05D004095 ORTHO05D003197 1.6e-18 97.8 340 37.4
Sed0007913 Sechium edule HOM05D004095 ORTHO05D003197 2.0e-18 97.4 316 32.0
Actinidia17001 Actinidia chinensis HOM05D004095 ORTHO05D003197 5.9e-18 95.9 282 36.2
Sed0017695 Sechium edule HOM05D004095 ORTHO05D003197 7.7e-18 95.5 319 36.4
PGSC0003DMG400029333 Solanum tuberosum HOM05D004095 ORTHO05D003197 7.7e-18 95.5 320 33.1
QL11p050200 Quercus lobata HOM05D004095 ORTHO05D003197 1.0e-17 95.1 330 35.2
Dinv39538 Davidia involucrata HOM05D004095 ORTHO05D003197 8.5e-17 92.0 148 52.7
Aqoxy6G02168 Aquilegia oxysepala HOM05D004095 ORTHO05D003197 1.1e-16 91.7 327 30.9
Aqoxy5G01820 Aquilegia oxysepala HOM05D004095 ORTHO05D003197 1.5e-16 91.3 344 32.6
TWI36G1615 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 1.9e-16 90.9 243 34.2
EL10Ac3g06641 Beta vulgaris HOM05D004095 ORTHO05D003197 2.5e-16 90.5 396 31.3
PSO541G2818 Papaver somniferum HOM05D004095 ORTHO05D003197 5.5e-16 89.4 333 33.0
CiPaw.08G067700 Carya illinoinensis HOM05D004095 ORTHO05D003197 7.2e-16 89.0 337 32.6
Peaxi162Scf00064g00737 Petunia axillaris HOM05D004095 ORTHO05D003197 1.6e-15 87.8 279 41.6
Gohir.D05G187800 Gossypium hirsutum HOM05D004095 ORTHO05D003197 3.6e-15 86.7 318 31.4
Ciclev10002009m.g Citrus clementina HOM05D004095 ORTHO05D003197 4.7e-15 86.3 337 30.9
Potri.005G242400 Populus trichocarpa HOM05D004095 ORTHO05D003197 4.7e-15 86.3 330 30.0
vmacro07570 Vaccinium macrocarpon HOM05D004095 ORTHO05D003197 4.7e-15 86.3 383 32.4
CSS0036757 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 6.1e-15 85.9 296 29.1
Gohir.A05G185000 Gossypium hirsutum HOM05D004095 ORTHO05D003197 6.1e-15 85.9 325 29.8
Gorai.009G193100 Gossypium raimondii HOM05D004095 ORTHO05D003197 6.1e-15 85.9 317 31.9
DCAR_009498 Daucus carota HOM05D004095 ORTHO05D003197 8.0e-15 85.5 388 30.9
Lsat_1_v5_gn_8_29800 Lactuca sativa HOM05D004095 ORTHO05D003197 1.0e-14 85.1 154 53.9
Duzib041G0318 Durio zibethinus HOM05D004095 ORTHO05D003197 4.0e-14 83.2 326 35.6
Sabra02G0015500 Salix brachista HOM05D004095 ORTHO05D003197 5.2e-14 82.8 233 33.0
THA.LOC104804274 Tarenaya hassleriana HOM05D004095 ORTHO05D003197 8.8e-14 82.0 354 30.5
Lj5g0025072 Lotus japonicus HOM05D004095 ORTHO05D003197 1.5e-13 81.3 316 32.6
Atru.chr3.863_Atru.chr3.864 Acer truncatum HOM05D004095 ORTHO05D003197 2.6e-13 80.5 370 31.9
Duzib093G1456 Durio zibethinus HOM05D004095 ORTHO05D003197 3.3e-13 80.1 333 28.2
PSO700G0117 Papaver somniferum HOM05D004095 ORTHO05D003197 3.3e-13 80.1 358 32.1
COL.COLO4_26117 Corchorus olitorius HOM05D004095 ORTHO05D003197 7.5e-13 79.0 242 31.8
Gorai.008G131100 Gossypium raimondii HOM05D004095 ORTHO05D003197 7.5e-13 79.0 235 33.6
HanXRQChr12g0366821 Helianthus annuus HOM05D004095 ORTHO05D003197 7.5e-13 79.0 396 30.1
PSO170G2543 Papaver somniferum HOM05D004095 ORTHO05D003197 7.5e-13 79.0 351 32.5
TPR.G32858 Trifolium pratense HOM05D013708 ORTHO05D003197 9.7e-13 78.6 320 31.9
unitig_747.g21527 Utricularia gibba HOM05D002344 ORTHO05D002954 1.3e-12 78.2 316 31.0
Actinidia15439 Actinidia chinensis HOM05D004095 ORTHO05D003197 2.2e-12 77.4 221 37.1
FAN20G0678 Fragaria x ananassa HOM05D004095 ORTHO05D003197 3.7e-12 76.6 315 27.9
THA.LOC104807504 Tarenaya hassleriana HOM05D004095 ORTHO05D003197 4.8e-12 76.3 348 31.0
Cfa005239 Carpinus fangiana HOM05D004095 ORTHO05D003197 1.8e-11 74.3 327 32.1
Thecc.08G047900 Theobroma cacao HOM05D004095 ORTHO05D003197 3.1e-11 73.6 324 33.3
Haze_02143 Corylus avellana HOM05D015147 ORTHO05D003197 4.1e-11 73.2 316 28.5
THA.LOC104809551 Tarenaya hassleriana HOM05D008819 ORTHO05D003197 4.1e-11 73.2 253 28.1
RcHm_v2.0_Chr6g0303321 Rosa chinensis HOM05D004095 ORTHO05D003197 5.3e-11 72.8 315 31.1
BcaB07g31703 Brassica carinata HOM05D004095 ORTHO05D003197 7.0e-11 72.4 323 30.7
Cfa013982 Carpinus fangiana HOM05D004095 ORTHO05D003197 9.1e-11 72.0 317 30.9
unitig_0.g2088 Utricularia gibba HOM05D004095 ORTHO05D003197 9.1e-11 72.0 414 23.2
Potri.009G134800 Populus trichocarpa HOM05D015147 ORTHO05D003197 1.2e-10 71.6 333 27.0
GSVIVG01009951001 Vitis vinifera HOM05D004095 ORTHO05D003197 1.6e-10 71.2 126 55.6
BcaC06g36322 Brassica carinata HOM05D004095 ORTHO05D003197 2.0e-10 70.9 326 27.9
FvH4_2g38160 Fragaria vesca HOM05D004095 ORTHO05D003197 2.0e-10 70.9 315 28.9
Gohir.A01G110100 Gossypium hirsutum HOM05D004095 ORTHO05D003197 2.0e-10 70.9 321 31.2
Prupe.1G362800 Prunus persica HOM05D004095 ORTHO05D003197 3.5e-10 70.1 227 24.7
Prupe.1G362500 Prunus persica HOM05D004095 ORTHO05D003197 4.5e-10 69.7 321 24.9
CARHR108180 Cardamine hirsuta HOM05D004095 ORTHO05D003197 7.7e-10 68.9 320 29.1
BraA07t28113Z Brassica rapa HOM05D004095 ORTHO05D003197 1.3e-09 68.2 331 26.3
A07p03170 Brassica napus HOM05D004095 ORTHO05D003197 1.7e-09 67.8 326 27.3
Eucgr.H00956 Eucalyptus grandis HOM05D066110 ORTHO05D003197 1.7e-09 67.8 220 26.8
FAN27G1813 Fragaria x ananassa HOM05D004095 ORTHO05D003197 2.2e-09 67.4 318 27.0
Gohir.D01G096700 Gossypium hirsutum HOM05D004095 ORTHO05D003197 2.2e-09 67.4 321 31.2
Medtr1g034990 Medicago truncatula HOM05D013708 ORTHO05D003197 2.9e-09 67.0 335 32.5
GSVIVG01018727001 Vitis vinifera HOM05D004095 ORTHO05D003197 2.9e-09 67.0 148 46.6
HanXRQChr13g0387151 Helianthus annuus HOM05D004095 ORTHO05D003197 5.0e-09 66.2 186 44.6
Sabra05G0187500 Salix brachista HOM05D004095 ORTHO05D003197 5.0e-09 66.2 234 27.4
Actinidia03180 Actinidia chinensis HOM05D004095 ORTHO05D003197 6.5e-09 65.9 246 28.9
PGR031G2559 Punica granatum HOM05D004095 ORTHO05D003197 1.1e-08 65.1 328 31.4
AT2G17787 Arabidopsis thaliana HOM05D004095 ORTHO05D003197 1.9e-08 64.3 351 27.6
AL3G50810 Arabidopsis lyrata HOM05D004095 ORTHO05D003197 2.5e-08 63.9 341 31.7
ECA233G2314 Erigeron canadensis HOM05D004095 ORTHO05D003197 2.5e-08 63.9 255 34.5
A09p11580 Brassica napus HOM05D004095 ORTHO05D003197 3.2e-08 63.5 326 24.8
BraA03t15466Z Brassica rapa HOM05D004095 ORTHO05D003197 4.2e-08 63.2 371 30.5
Phvul.001G004700 Phaseolus vulgaris HOM05D013708 ORTHO05D003197 4.2e-08 63.2 90 42.2
CANSAT25G2395 Cannabis sativa HOM05D004095 ORTHO05D003197 5.5e-08 62.8 75 40.0
Nn5g30782 Nelumbo nucifera HOM05D004095 ORTHO05D003197 5.5e-08 62.8 333 28.2
QL02p012206 Quercus lobata HOM05D004095 ORTHO05D003197 7.2e-08 62.4 89 39.3
MBI05_g23379_MAGBIO Magnolia biondii HOM05D004095 ORTHO05D003197 9.4e-08 62.0 144 43.8
A03p63990 Brassica napus HOM05D004095 ORTHO05D003197 1.2e-07 61.6 381 24.4
Glyma.17G259300 Glycine max HOM05D013708 ORTHO05D003197 1.2e-07 61.6 93 39.8
BolC1t00292H Brassica oleracea HOM05D004095 ORTHO05D003197 1.6e-07 61.2 333 30.3
Thhalv10022767m.g Eutrema salsugineum HOM05D004095 ORTHO05D003197 1.6e-07 61.2 373 26.5
Aa31LG7G4540 Aethionema arabicum HOM05D008819 ORTHO05D003197 2.1e-07 60.8 338 24.6
Carub.0007s0428 Capsella rubella HOM05D004095 ORTHO05D003197 2.1e-07 60.8 356 32.6
CARHR244340 Cardamine hirsuta HOM05D004095 ORTHO05D003197 2.1e-07 60.8 355 29.9
Ah.00g000350 Amaranthus hybridus HOM05D004095 ORTHO05D003197 2.7e-07 60.5 88 39.8
BcaNung05051 Brassica carinata HOM05D004095 ORTHO05D003197 2.7e-07 60.5 363 27.0
AL7G15100 Arabidopsis lyrata HOM05D004095 ORTHO05D003197 3.6e-07 60.1 379 29.6
TPR.G26385 Trifolium pratense HOM05D013708 ORTHO05D003197 4.7e-07 59.7 215 39.1
Cpa.g.sc26.299 Carica papaya HOM05D004095 ORTHO05D003197 6.1e-07 59.3 76 36.8
Ca_13423_v3 Cicer arietinum L. HOM05D013708 ORTHO05D003197 6.1e-07 59.3 341 29.3
Ca_13439_v3 Cicer arietinum L. HOM05D013708 ORTHO05D003197 6.1e-07 59.3 341 29.3
BraA09t36805Z Brassica rapa HOM05D004095 ORTHO05D003197 1.0e-06 58.5 322 27.6
Prupe.7G171900 Prunus persica HOM05D004095 ORTHO05D003197 1.0e-06 58.5 136 44.1
Thecc.02G059700 Theobroma cacao HOM05D015147 ORTHO05D003197 1.4e-06 58.2 88 36.4
TAR625G0988 Trochodendron aralioides HOM05D004095 ORTHO05D003197 1.4e-06 58.2 210 28.6
FAN19G1292 Fragaria x ananassa HOM05D024588 ORTHO05D003197 2.3e-06 57.4 131 42.0
Gorai.002G122400 Gossypium raimondii HOM05D004095 ORTHO05D003197 2.3e-06 57.4 228 29.4
C01p03060 Brassica napus HOM05D004095 ORTHO05D003197 3.0e-06 57.0 347 29.7
Aa31LG6G12890 Aethionema arabicum HOM05D004095 ORTHO05D003197 4.0e-06 56.6 378 28.8
C09p13630 Brassica napus HOM05D004095 ORTHO05D003197 5.2e-06 56.2 322 29.8
Glyma.14G220400 Glycine max HOM05D013708 ORTHO05D003197 8.8e-06 55.5 70 42.9


User provided reference genes

Program Settings