Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.22233 Avicennia marina HOM05D003374 ORTHO05D009470 4.1e-78 294.7 148 100.0
MSTRG.24362 Avicennia marina HOM05D003374 ORTHO05D009470 3.8e-44 181.8 133 70.7
Potri.005G107800 Populus trichocarpa HOM05D003374 ORTHO05D009470 4.0e-33 145.2 124 58.1
Cc07_g11310 Coffea canephora HOM05D003374 ORTHO05D009470 1.2e-32 143.7 142 53.5
Cc08_g04880 Coffea canephora HOM05D003374 ORTHO05D009470 1.2e-32 143.7 142 53.5
Sabra05G0088300 Salix brachista HOM05D003374 ORTHO05D009470 5.8e-32 141.4 139 54.0
Dinv08548 Davidia involucrata HOM05D003374 ORTHO05D009470 2.2e-31 139.4 125 56.8
Hma1.2p1_0315F.1_g122600 Hydrangea macrophylla HOM05D003374 ORTHO05D009470 3.7e-31 138.7 126 56.3
Cfa007029 Carpinus fangiana HOM05D003374 ORTHO05D009470 4.9e-31 138.3 127 55.9
Haze_03703 Corylus avellana HOM05D003374 ORTHO05D009415 6.4e-31 137.9 127 55.1
QL06p052079 Quercus lobata HOM05D003374 ORTHO05D009470 2.4e-30 136.0 135 51.9
Thecc.01G011500 Theobroma cacao HOM05D003374 ORTHO05D009470 2.4e-30 136.0 118 55.9
CiPaw.08G125800 Carya illinoinensis HOM05D003374 ORTHO05D009470 9.2e-30 134.0 123 56.1
Nitab4.5_0002105g0080 Nicotiana tabacum HOM05D003374 ORTHO05D009470 1.2e-29 133.7 132 54.5
Ciclev10026638m.g Citrus clementina HOM05D003374 ORTHO05D009470 1.6e-29 133.3 137 52.6
Atru.chr3.907 Acer truncatum HOM05D003374 ORTHO05D009470 2.0e-29 132.9 120 55.8
Medtr5g022970 Medicago truncatula HOM05D003374 ORTHO05D009470 3.5e-29 132.1 125 55.2
Rhsim10G0205800 Rhododendron simsii HOM05D003374 ORTHO05D009470 3.5e-29 132.1 133 53.4
Migut.N02761 Erythranthe guttata HOM05D003374 ORTHO05D009470 6.0e-29 131.3 112 62.5
Eucgr.I02305 Eucalyptus grandis HOM05D003374 ORTHO05D009470 7.8e-29 131.0 124 55.6
MD15G1237400 Malus domestica HOM05D003374 ORTHO05D009470 1.3e-28 130.2 119 55.5
vmacro20496 Vaccinium macrocarpon HOM05D003374 ORTHO05D009470 1.3e-28 130.2 131 53.4
Ca_24942_v3 Cicer arietinum L. HOM05D003374 ORTHO05D009470 1.7e-28 129.8 126 52.4
Manes.02G110400 Manihot esculenta HOM05D003374 ORTHO05D009470 1.7e-28 129.8 117 56.4
Nitab4.5_0006892g0010 Nicotiana tabacum HOM05D003374 ORTHO05D009470 1.7e-28 129.8 132 53.8
RcHm_v2.0_Chr2g0098351 Rosa chinensis HOM05D003374 ORTHO05D009470 1.7e-28 129.8 118 53.4
CANSAT01G1253 Cannabis sativa HOM05D003374 ORTHO05D009470 3.9e-28 128.6 123 56.9
Oeu022073.1 Olea europaea HOM05D003374 ORTHO05D009470 3.9e-28 128.6 132 54.5
Prupe.7G175000 Prunus persica HOM05D003374 ORTHO05D009470 6.6e-28 127.9 121 52.1
Phvul.002G104800 Phaseolus vulgaris HOM05D003374 ORTHO05D009470 8.6e-28 127.5 119 53.8
VMungo1215G1047 Vigna mungo HOM05D003374 ORTHO05D009470 8.6e-28 127.5 127 52.0
SalBow6G5967 Salvia bowleyana HOM05D003374 ORTHO05D009470 1.9e-27 126.3 125 55.2
Duzib145G0002 Durio zibethinus HOM05D003374 ORTHO05D009470 7.3e-27 124.4 118 55.9
SalBow8G5385 Salvia bowleyana HOM05D003374 ORTHO05D009470 7.3e-27 124.4 125 55.2
CSS0026426 Camellia sinensis var. sinensis HOM05D003374 ORTHO05D009415 1.2e-26 123.6 135 48.9
PSO675G4674 Papaver somniferum HOM05D003374 ORTHO05D009470 1.2e-26 123.6 130 49.2
TWI73G0454 Tripterygium wilfordii HOM05D003374 ORTHO05D009470 1.2e-26 123.6 137 47.4
Lalb_Chr09g0321441 Lupinus albus HOM05D003374 ORTHO05D009470 2.8e-26 122.5 124 50.0
PSO541G4788 Papaver somniferum HOM05D003374 ORTHO05D009470 2.8e-26 122.5 130 49.2
FAN23G1041 Fragaria x ananassa HOM05D003374 ORTHO05D009470 4.7e-26 121.7 119 52.1
FvH4_1g11080 Fragaria vesca HOM05D003374 ORTHO05D009470 6.2e-26 121.3 118 51.7
FAN26G1101 Fragaria x ananassa HOM05D003374 ORTHO05D009470 6.2e-26 121.3 118 50.8
FAN28G2426 Fragaria x ananassa HOM05D003374 ORTHO05D009470 6.2e-26 121.3 119 52.1
Gohir.D03G005500 Gossypium hirsutum HOM05D003374 ORTHO05D009470 6.2e-26 121.3 120 56.7
Gorai.003G005900 Gossypium raimondii HOM05D003374 ORTHO05D009470 6.2e-26 121.3 120 56.7
PGR102G2171 Punica granatum HOM05D003374 ORTHO05D009470 8.0e-26 120.9 138 45.7
TAR625G1139 Trochodendron aralioides HOM05D003374 ORTHO05D009470 8.0e-26 120.9 123 52.8
Gohir.A02G174300 Gossypium hirsutum HOM05D003374 ORTHO05D009470 1.1e-25 120.6 116 56.0
PGSC0003DMG400003663 Solanum tuberosum HOM05D003374 ORTHO05D009470 1.1e-25 120.6 123 54.5
Sopen02g028160 Solanum pennellii HOM05D003374 ORTHO05D009470 1.4e-25 120.2 123 53.7
Glyma.11G080800 Glycine max HOM05D003374 ORTHO05D009470 1.8e-25 119.8 126 47.6
CAN.G890.28 Capsicum annuum HOM05D003374 ORTHO05D009470 2.3e-25 119.4 124 53.2
Lj2g0014457 Lotus japonicus HOM05D003374 ORTHO05D009470 3.1e-25 119.0 117 50.4
AL3G50710 Arabidopsis lyrata HOM05D003374 ORTHO05D009470 4.0e-25 118.6 121 48.8
AT2G17710 Arabidopsis thaliana HOM05D003374 ORTHO05D009470 5.2e-25 118.2 121 48.8
Peaxi162Scf00328g00118 Petunia axillaris HOM05D003374 ORTHO05D009470 5.2e-25 118.2 131 50.4
Carub.0003s3182 Capsella rubella HOM05D003374 ORTHO05D009470 8.9e-25 117.5 123 48.8
Glyma.01G162500 Glycine max HOM05D003374 ORTHO05D009470 3.4e-24 115.5 126 49.2
MBI09_g46000_MAGBIO Magnolia biondii HOM05D003374 ORTHO05D009470 3.4e-24 115.5 131 49.6
CARHR108000 Cardamine hirsuta HOM05D003374 ORTHO05D009470 5.8e-24 114.8 121 46.3
C07p05580 Brassica napus HOM05D003374 ORTHO05D009470 7.5e-24 114.4 121 47.9
Sp3g31120 Schrenkiella parvula HOM05D003374 ORTHO05D009470 9.8e-24 114.0 121 47.9
Cpa.g.sc6.313 Carica papaya HOM05D003374 ORTHO05D009470 1.3e-23 113.6 123 50.4
BcaB03g16544 Brassica carinata HOM05D003374 ORTHO05D009470 2.2e-23 112.8 121 47.1
BraA07t28128Z Brassica rapa HOM05D003374 ORTHO05D009470 2.2e-23 112.8 121 47.1
Lalb_Chr05g0212181 Lupinus albus HOM05D003374 ORTHO05D009470 2.2e-23 112.8 124 50.0
Thhalv10022897m.g Eutrema salsugineum HOM05D003374 ORTHO05D009470 2.9e-23 112.5 121 46.3
Potri.005G107900 Populus trichocarpa HOM05D003374 ORTHO05D009470 3.7e-23 112.1 107 54.2
Aa31LG8G14990 Aethionema arabicum HOM05D003374 ORTHO05D009470 6.4e-23 111.3 122 47.5
BcaC06g36303 Brassica carinata HOM05D003374 ORTHO05D009470 6.4e-23 111.3 121 49.6
BcaB08g34755 Brassica carinata HOM05D003374 ORTHO05D009470 1.1e-22 110.5 121 47.1
Aqoxy6G01986 Aquilegia oxysepala HOM05D003374 ORTHO05D009470 1.9e-22 109.8 113 52.2
BolC7t40958H Brassica oleracea HOM05D003374 ORTHO05D009415 2.4e-22 109.4 123 47.2
THA.LOC104819731 Tarenaya hassleriana HOM05D003374 ORTHO05D009470 2.4e-22 109.4 124 48.4
FAN19G0939 Fragaria x ananassa HOM05D003374 ORTHO05D009470 5.4e-22 108.2 131 45.8
BcaC01g02894 Brassica carinata HOM05D003374 ORTHO05D009470 1.2e-21 107.1 121 45.5
C03p58640 Brassica napus HOM05D003374 ORTHO05D009470 1.2e-21 107.1 121 45.5
BolC3t18125H Brassica oleracea HOM05D003374 ORTHO05D009470 1.2e-21 107.1 121 45.5
A06p33690 Brassica napus HOM05D003374 ORTHO05D009470 2.1e-21 106.3 121 45.5
BraA06t26303Z Brassica rapa HOM05D003374 ORTHO05D009470 2.1e-21 106.3 121 45.5
CDE05G2149 Ceratophyllum demersum HOM05D003374 ORTHO05D009470 2.7e-21 105.9 121 42.1
Duzib147G0965 Durio zibethinus HOM05D003374 ORTHO05D009470 3.5e-21 105.5 105 53.3
EL10Ac9g21336 Beta vulgaris HOM05D003374 ORTHO05D009470 4.6e-21 105.1 118 47.5
Actinidia22937 Actinidia chinensis HOM05D003374 ORTHO05D009470 1.3e-20 103.6 103 55.3
unitig_578.g16135 Utricularia gibba HOM05D003374 ORTHO05D009470 2.3e-20 102.8 98 51.0
GSVIVG01005193001 Vitis vinifera HOM05D003374 ORTHO05D009470 3.9e-20 102.1 102 51.0
CDE05G3297 Ceratophyllum demersum HOM05D003374 ORTHO05D009470 8.6e-20 100.9 117 41.9
THA.LOC104804280 Tarenaya hassleriana HOM05D003374 ORTHO05D009470 4.3e-19 98.6 134 41.8
AUR62012999 Chenopodium quinoa HOM05D003374 ORTHO05D009470 9.5e-19 97.4 104 51.0
Sc18g0006270 Simmondsia chinensis HOM05D003374 ORTHO05D009470 8.9e-17 90.9 82 57.3
COL.COLO4_22495 Corchorus olitorius HOM05D003374 ORTHO05D009470 2.2e-15 86.3 82 57.3
Actinidia17405 Actinidia chinensis HOM05D000373 ORTHO05D001763 3.0e-12 75.9 62 59.7
TPR.G25136 Trifolium pratense HOM05D000373 ORTHO05D001763 6.6e-12 74.7 101 43.6
Hund00012 Selenicereus undatus HOM05D003374 ORTHO05D009470 1.9e-11 73.2 75 57.3
TPR.G20269 Trifolium pratense HOM05D003374 ORTHO05D009470 3.3e-11 72.4 48 62.5
arahy.Tifrunner.gnm1.ann1.HG61QK Arachis hypogaea HOM05D003374 ORTHO05D009470 6.2e-10 68.2 84 45.2
arahy.Tifrunner.gnm1.ann1.YP763J Arachis hypogaea HOM05D003374 ORTHO05D009470 6.2e-10 68.2 84 45.2
Ah.01g008140 Amaranthus hybridus HOM05D003374 ORTHO05D009470 4.4e-08 62.0 89 47.2
Solyc02g083380.3 Solanum lycopersicum HOM05D003374 ORTHO05D009470 1.7e-07 60.1 52 53.8
A07p03300 Brassica napus HOM05D003374 ORTHO05D009415 4.9e-07 58.5 71 43.7
ATR0346G001 Amborella trichopoda HOM05D003374 ORTHO05D009470 1.9e-06 56.6 79 43.0
Duzib145G0007 Durio zibethinus HOM05D003374 ORTHO05D009470 5.4e-06 55.1 60 48.3
AUR62010008 Chenopodium quinoa HOM05D003374 ORTHO05D010386 7.1e-06 54.7 65 46.2


User provided reference genes

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