Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.22219 Avicennia marina HOM05D005715 ORTHO05D007160 1.2e-208 729.6 363 100.0
MSTRG.24379 Avicennia marina HOM05D005715 ORTHO05D007160 2.2e-133 479.6 351 70.7
Oeu053093.1 Olea europaea HOM05D005715 ORTHO05D007160 7.6e-102 374.8 359 59.3
Oeu053625.1 Olea europaea HOM05D005715 ORTHO05D007160 1.1e-95 354.4 357 57.4
Nitab4.5_0000497g0110 Nicotiana tabacum HOM05D005715 ORTHO05D007160 4.3e-81 305.8 365 49.6
QL12p038205 Quercus lobata HOM05D005715 ORTHO05D007160 3.7e-80 302.8 367 50.1
Duzib093G0740 Durio zibethinus HOM05D005715 ORTHO05D007160 4.8e-80 302.4 369 49.6
Thecc.08G087700 Theobroma cacao HOM05D005715 ORTHO05D007160 2.4e-79 300.1 361 50.4
CAN.G724.34 Capsicum annuum HOM05D005715 ORTHO05D007160 4.0e-79 299.3 363 49.0
SGA_v2.0_scaffold28G11837 Striga asiatica HOM05D005715 ORTHO05D007160 4.0e-79 299.3 348 50.6
QL05p065482 Quercus lobata HOM05D005715 ORTHO05D007160 5.3e-79 298.9 367 49.9
PGSC0003DMG400010622 Solanum tuberosum HOM05D005715 ORTHO05D007160 6.9e-79 298.5 365 49.6
Solyc04g077740.1 Solanum lycopersicum HOM05D005715 ORTHO05D007160 9.0e-79 298.1 367 49.6
Manes.18G047200 Manihot esculenta HOM05D005715 ORTHO05D007160 1.5e-78 297.4 353 47.0
Sopen04g031360 Solanum pennellii HOM05D005715 ORTHO05D007160 1.5e-78 297.4 367 49.3
Nitab4.5_0003725g0050 Nicotiana tabacum HOM05D005715 ORTHO05D007160 1.3e-77 294.3 367 49.0
SGA_v2.0_scaffold152G36807 Striga asiatica HOM05D005715 ORTHO05D007160 1.3e-77 294.3 334 52.7
CiPaw.08G050600 Carya illinoinensis HOM05D005715 ORTHO05D007160 7.9e-75 285.0 366 49.2
Peaxi162Scf00081g00232 Petunia axillaris HOM05D005715 ORTHO05D007160 7.9e-75 285.0 365 49.6
Dinv44948 Davidia involucrata HOM05D005715 ORTHO05D007160 1.5e-73 280.8 354 50.0
Cpa.g.sc142.38 Carica papaya HOM05D005715 ORTHO05D007160 4.3e-73 279.3 362 46.7
Ciclev10001560m.g Citrus clementina HOM05D005715 ORTHO05D007160 6.3e-72 275.4 366 48.4
Lj4C71T16 Lonicera japonica HOM05D005715 ORTHO05D007160 6.3e-72 275.4 360 46.1
COL.COLO4_28493 Corchorus olitorius HOM05D005715 ORTHO05D007160 1.8e-71 273.9 357 47.1
Potri.002G117700 Populus trichocarpa HOM05D005715 ORTHO05D007160 2.6e-70 270.0 356 45.8
Prupe.1G421700 Prunus persica HOM05D005715 ORTHO05D007160 5.0e-69 265.8 365 47.9
CSS0034937 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 6.5e-69 265.4 360 48.9
CSS0039747 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 6.5e-69 265.4 360 48.9
Glyma.14G089033 Glycine max HOM05D005715 ORTHO05D007160 1.1e-68 264.6 362 46.7
Gohir.A05G210700 Gossypium hirsutum HOM05D005715 ORTHO05D007160 1.4e-68 264.2 364 47.3
Lalb_Chr22g0355691 Lupinus albus HOM05D005715 ORTHO05D007160 4.2e-68 262.7 363 46.8
Sabra02G0092400 Salix brachista HOM05D005715 ORTHO05D007160 9.4e-68 261.5 349 45.3
CANSAT25G3138 Cannabis sativa HOM05D005715 ORTHO05D007160 1.6e-67 260.8 371 46.4
Cfa013768 Carpinus fangiana HOM05D005715 ORTHO05D007160 1.6e-67 260.8 353 46.5
Gorai.009G220700 Gossypium raimondii HOM05D005715 ORTHO05D007160 3.6e-67 259.6 361 46.5
Haze_22425 Corylus avellana HOM05D005715 ORTHO05D007160 6.1e-67 258.8 355 46.2
Psat6g017920 Pisum sativum HOM05D005715 ORTHO05D007160 3.9e-66 256.1 362 45.3
Potri.014G015300 Populus trichocarpa HOM05D005715 ORTHO05D007160 5.1e-66 255.8 352 44.9
FAN24G0894 Fragaria x ananassa HOM05D005715 ORTHO05D007160 2.0e-65 253.8 369 46.9
Medtr1g017920 Medicago truncatula HOM05D005715 ORTHO05D007160 3.3e-65 253.1 360 46.7
PGR031G1686 Punica granatum HOM05D005715 ORTHO05D007160 5.7e-65 252.3 392 43.4
MD08G1080800 Malus domestica HOM05D005715 ORTHO05D007160 7.4e-65 251.9 372 45.2
FvH4_2g32940 Fragaria vesca HOM05D005715 ORTHO05D007160 1.7e-64 250.8 370 47.0
FAN27G0384 Fragaria x ananassa HOM05D005715 ORTHO05D007160 2.2e-64 250.4 371 46.9
TWI12G0318 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 3.7e-64 249.6 358 44.1
Eucgr.F02242 Eucalyptus grandis HOM05D005715 ORTHO05D007160 6.3e-64 248.8 366 43.7
FAN15G0086 Fragaria x ananassa HOM05D005715 ORTHO05D007160 6.3e-64 248.8 370 45.9
RcHm_v2.0_Chr6g0309781 Rosa chinensis HOM05D005715 ORTHO05D007160 8.2e-64 248.4 360 45.3
Phvul.001G028500 Phaseolus vulgaris HOM05D005715 ORTHO05D007160 1.1e-63 248.1 357 46.2
FAN20G0332 Fragaria x ananassa HOM05D005715 ORTHO05D007160 1.4e-63 247.7 364 46.2
Gohir.D05G214000 Gossypium hirsutum HOM05D005715 ORTHO05D007160 1.4e-63 247.7 352 45.5
Lj5g0027881 Lotus japonicus HOM05D005715 ORTHO05D007160 4.1e-63 246.1 361 44.6
TWI56G0918 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 2.0e-62 243.8 375 44.0
Dinv39217 Davidia involucrata HOM05D005715 ORTHO05D007160 7.7e-62 241.9 340 48.5
Rhsim06G0062800 Rhododendron simsii HOM05D005715 ORTHO05D007160 5.0e-61 239.2 360 46.1
Lalb_Chr24g0399501 Lupinus albus HOM05D005715 ORTHO05D007160 1.1e-60 238.0 365 44.4
Actinidia10205 Actinidia chinensis HOM05D005715 ORTHO05D007160 5.5e-60 235.7 356 43.8
Glyma.17G234300 Glycine max HOM05D005715 ORTHO05D007160 3.6e-59 233.0 365 43.3
HanXRQChr15g0495001 Helianthus annuus HOM05D005715 ORTHO05D007160 1.8e-58 230.7 387 40.6
Carub.0001s2602 Capsella rubella HOM05D005715 ORTHO05D007160 2.3e-58 230.3 370 42.2
Nn5g30612 Nelumbo nucifera HOM05D005715 ORTHO05D007160 2.3e-58 230.3 380 42.4
Lalb_Chr14g0368141 Lupinus albus HOM05D005715 ORTHO05D007160 5.1e-58 229.2 358 44.4
TAR628G0320 Trochodendron aralioides HOM05D005715 ORTHO05D007160 1.1e-57 228.0 357 40.9
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 1.1e-55 221.5 350 40.9
VMungo0647G0294 Vigna mungo HOM05D005715 ORTHO05D007160 2.4e-55 220.3 422 37.2
BcaC01g01604 Brassica carinata HOM05D005715 ORTHO05D007160 4.1e-55 219.5 352 41.8
C03p74190 Brassica napus HOM05D005715 ORTHO05D007160 7.0e-55 218.8 352 42.0
Aa31LG7G10200 Aethionema arabicum HOM05D005715 ORTHO05D007160 9.1e-55 218.4 367 41.1
AT1G27461 Arabidopsis thaliana HOM05D005715 ORTHO05D007160 1.2e-54 218.0 371 41.0
BraA08t34576Z Brassica rapa HOM05D005715 ORTHO05D007160 2.0e-54 217.2 349 41.8
AL1G40890 Arabidopsis lyrata HOM05D005715 ORTHO05D007160 2.6e-54 216.9 372 41.7
CARHR027070 Cardamine hirsuta HOM05D005715 ORTHO05D007160 7.7e-54 215.3 359 40.4
Nn1g04537 Nelumbo nucifera HOM05D005715 ORTHO05D007160 7.7e-54 215.3 369 40.4
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 1.0e-53 214.9 351 41.0
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 1.3e-53 214.5 352 41.5
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 1.7e-53 214.2 352 41.5
SalBow2G0154 Salvia bowleyana HOM05D005715 ORTHO05D007160 8.5e-53 211.8 180 64.4
BcaC05g26566 Brassica carinata HOM05D005715 ORTHO05D007160 1.1e-52 211.5 352 41.2
A08p26250 Brassica napus HOM05D005715 ORTHO05D007160 2.5e-52 210.3 350 40.9
Ah.05g167050 Amaranthus hybridus HOM05D005715 ORTHO05D007160 4.2e-52 209.5 362 40.9
Gorai.010G026200 Gossypium raimondii HOM05D005715 ORTHO05D007160 1.6e-51 207.6 354 40.4
Thhalv10009308m.g Eutrema salsugineum HOM05D005715 ORTHO05D007160 1.4e-50 204.5 360 39.2
BcaC01g06948 Brassica carinata HOM05D005715 ORTHO05D007160 1.8e-50 204.1 369 40.4
MELO3C016824.2 Cucumis melo HOM05D005715 ORTHO05D007160 2.3e-50 203.8 359 40.9
THA.LOC104825172 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 1.1e-49 201.4 363 39.9
Sc02g0007950 Simmondsia chinensis HOM05D005715 ORTHO05D007160 4.4e-49 199.5 355 41.4
EL10Ac1g02368 Beta vulgaris HOM05D005715 ORTHO05D007160 9.7e-49 198.4 382 40.6
ClCG05G020660 Citrullus lanatus HOM05D005715 ORTHO05D007160 2.2e-48 197.2 361 40.2
THA.LOC104825782 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 3.7e-48 196.4 360 40.6
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 4.8e-48 196.1 341 39.9
Gohir.D06G021600 Gossypium hirsutum HOM05D005715 ORTHO05D007160 8.2e-48 195.3 354 39.3
Lj1g0016682 Lotus japonicus HOM05D005715 ORTHO05D007160 5.3e-47 192.6 362 37.8
arahy.Tifrunner.gnm1.ann1.42CAD1 Arachis hypogaea HOM05D005715 ORTHO05D007160 2.0e-46 190.7 418 36.4
Sp1g23710 Schrenkiella parvula HOM05D005715 ORTHO05D007160 3.5e-46 189.9 359 39.3
SHI08419 Sapria himalayana HOM05D005715 ORTHO05D000023 4.5e-46 189.5 328 40.2
ECA232G0180 Erigeron canadensis HOM05D005715 ORTHO05D007160 7.7e-46 188.7 358 35.5
Lj4P757T25 Lonicera japonica HOM05D005715 ORTHO05D007160 1.0e-45 188.3 346 40.2
arahy.Tifrunner.gnm1.ann1.3URM83 Arachis hypogaea HOM05D005715 ORTHO05D009860 1.3e-45 188.0 420 36.4
Migut.N02788 Erythranthe guttata HOM05D005715 ORTHO05D007160 1.2e-43 181.4 136 72.1
Gohir.A06G024500 Gossypium hirsutum HOM05D005715 ORTHO05D007160 2.7e-43 180.3 366 37.4
unitig_744.g24126 Utricularia gibba HOM05D005715 ORTHO05D007160 1.4e-42 177.9 347 40.6
arahy.Tifrunner.gnm1.ann1.B5Z1I8 Arachis hypogaea HOM05D003856 ORTHO05D004547 9.7e-41 171.8 346 38.4
Aqoxy6G02590 Aquilegia oxysepala HOM05D005715 ORTHO05D007160 3.5e-38 163.3 371 34.5
MBI16_g02456_MAGBIO Magnolia biondii HOM05D005715 ORTHO05D007160 5.9e-38 162.5 365 35.6
unitig_21.g20630 Utricularia gibba HOM05D005715 ORTHO05D007160 1.7e-37 161.0 299 41.8
DCAR_012819 Daucus carota HOM05D005715 ORTHO05D007160 5.0e-37 159.5 366 35.0
GSVIVG01009335001 Vitis vinifera HOM05D005715 ORTHO05D007160 3.2e-36 156.8 278 40.3
TPR.G825 Trifolium pratense HOM05D005715 ORTHO05D007160 5.5e-36 156.0 216 44.0
AUR62022469 Chenopodium quinoa HOM05D005715 ORTHO05D007160 7.2e-36 155.6 186 50.0
BcaC05g26750 Brassica carinata HOM05D005715 ORTHO05D007160 9.4e-36 155.2 280 40.7
AUR62037422 Chenopodium quinoa HOM05D005715 ORTHO05D007160 1.4e-34 151.4 186 48.4
PSO541G4157 Papaver somniferum HOM05D005715 ORTHO05D007160 1.3e-32 144.8 378 32.0
Sed0010783 Sechium edule HOM05D005715 ORTHO05D007160 1.3e-32 144.8 357 35.0
CsaV3_4G035110 Cucumis sativus L. HOM05D005715 ORTHO05D007160 1.7e-32 144.4 193 45.6
Hma1.2p1_3250F.1_g334460 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 4.8e-32 142.9 196 45.4
ATR0739G069 Amborella trichopoda HOM05D005715 ORTHO05D007160 3.1e-31 140.2 377 30.8
DCAR_008858 Daucus carota HOM05D005715 ORTHO05D007160 7.0e-31 139.0 364 31.0
Os07g0585700 Oryza sativa ssp. japonica HOM05D005715 ORTHO05D007160 7.0e-31 139.0 352 32.7
PSO675G4043 Papaver somniferum HOM05D005715 ORTHO05D007160 7.0e-31 139.0 194 41.2
Hma1.2p1_0819F.1_g223600 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 9.1e-31 138.7 196 44.4
Sed0026939 Sechium edule HOM05D005715 ORTHO05D007160 9.1e-31 138.7 177 46.3
HPP92_024906 Vanilla planifolia HOM05D005715 ORTHO05D007160 2.7e-30 137.1 358 30.4
Zm00001eb325870 Zea mays HOM05D005715 ORTHO05D007160 1.7e-29 134.4 357 34.5
Zm00001eb108020 Zea mays HOM05D005715 ORTHO05D007160 1.2e-27 128.3 353 32.9
BcaC01g01609 Brassica carinata HOM05D005715 ORTHO05D007160 1.4e-26 124.8 118 48.3
TPR.G12997 Trifolium pratense HOM05D005715 ORTHO05D007160 4.3e-20 103.2 107 56.1
Duzib041G0674 Durio zibethinus HOM05D005715 ORTHO05D007160 2.8e-19 100.5 109 55.0
BcaC05g26749 Brassica carinata HOM05D005715 ORTHO05D007160 3.1e-18 97.1 219 38.4
Pp3c7_20380 Physcomitrium patens HOM05D005715 ORTHO05D007160 1.7e-16 91.3 153 35.3
Zm00001eb020940 Zea mays HOM05D005715 ORTHO05D007160 3.2e-15 87.0 360 29.7
SEGI_17393 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 2.7e-14 84.0 157 33.8
SEGI_33265 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 2.7e-14 84.0 148 35.8
Pp3c11_8450 Physcomitrium patens HOM05D005715 ORTHO05D007160 3.0e-13 80.5 153 34.0
Pp3c7_18640 Physcomitrium patens HOM05D005715 ORTHO05D007160 8.6e-13 79.0 153 32.7
Mapoly0094s0025 Marchantia polymorpha HOM05D005715 ORTHO05D007160 1.1e-12 78.6 161 32.9
Pp3c11_8920 Physcomitrium patens HOM05D005715 ORTHO05D007160 2.8e-11 73.9 157 30.6
ATR0609G089 Amborella trichopoda HOM05D001735 ORTHO05D001640 6.2e-11 72.8 326 26.1
Actinidia08859 Actinidia chinensis HOM05D001735 ORTHO05D001640 3.5e-06 57.0 335 24.5
Aqoxy5G03520 Aquilegia oxysepala HOM05D001735 ORTHO05D001640 3.5e-06 57.0 210 26.7
PSO063G5781 Papaver somniferum HOM05D001735 ORTHO05D001640 4.6e-06 56.6 158 30.4
PSO063G6933 Papaver somniferum HOM05D001735 ORTHO05D001640 4.6e-06 56.6 158 30.4
PSO170G3003 Papaver somniferum HOM05D001735 ORTHO05D001640 4.6e-06 56.6 158 30.4
PSO210G1866 Papaver somniferum HOM05D001735 ORTHO05D001640 4.6e-06 56.6 158 30.4
PSO339G0231 Papaver somniferum HOM05D001735 ORTHO05D001640 4.6e-06 56.6 158 30.4
TAR374G1031 Trochodendron aralioides HOM05D001735 ORTHO05D001640 7.8e-06 55.8 178 29.8


User provided reference genes

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