Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.22199 Avicennia marina HOM05D000779 ORTHO05D000246 1.5e-83 312.8 153 100.0
MSTRG.24397 Avicennia marina HOM05D000779 ORTHO05D000246 1.2e-56 223.4 147 78.9
CSS0033696 Camellia sinensis var. sinensis HOM05D000779 ORTHO05D000246 1.6e-40 169.9 146 67.8
Dinv44917 Davidia involucrata HOM05D000779 ORTHO05D000246 1.7e-34 149.8 147 60.5
Migut.N02808 Erythranthe guttata HOM05D000779 ORTHO05D000246 4.9e-34 148.3 162 54.9
Hma1.2p1_1068F.1_g253980 Hydrangea macrophylla HOM05D000779 ORTHO05D000246 3.2e-33 145.6 142 62.0
Oeu053667.3 Olea europaea HOM05D000779 ORTHO05D000246 1.6e-32 143.3 140 57.9
Duzib093G2177 Durio zibethinus HOM05D000779 ORTHO05D000246 2.7e-32 142.5 143 59.4
Manes.18G052901 Manihot esculenta HOM05D000779 ORTHO05D000246 1.7e-31 139.8 142 57.7
Thecc.08G081900 Theobroma cacao HOM05D000779 ORTHO05D000246 2.3e-31 139.4 142 57.7
Duzib041G0151 Durio zibethinus HOM05D000779 ORTHO05D000246 6.6e-31 137.9 142 57.0
Cc10_g07850 Coffea canephora HOM05D000779 ORTHO05D000246 1.6e-29 133.3 145 55.2
Potri.002G113300 Populus trichocarpa HOM05D000779 ORTHO05D000246 2.8e-29 132.5 142 57.7
COL.COLO4_35372 Corchorus olitorius HOM05D000779 ORTHO05D000246 3.6e-29 132.1 143 58.7
TAR381G1392 Trochodendron aralioides HOM05D000779 ORTHO05D000246 1.8e-28 129.8 143 54.5
Dinv01227 Davidia involucrata HOM05D000779 ORTHO05D000246 5.2e-28 128.3 149 55.0
Sabra02G0089800 Salix brachista HOM05D000779 ORTHO05D000246 5.2e-28 128.3 140 57.9
Duzib116G0024 Durio zibethinus HOM05D000779 ORTHO05D000246 1.5e-27 126.7 142 55.6
TAR376G0473 Trochodendron aralioides HOM05D000779 ORTHO05D000246 1.5e-27 126.7 142 52.8
CiPaw.15G043300 Carya illinoinensis HOM05D000779 ORTHO05D000246 2.6e-27 125.9 143 55.2
Gohir.A05G213100 Gossypium hirsutum HOM05D000779 ORTHO05D000246 3.4e-27 125.6 142 54.9
Nn5g30694 Nelumbo nucifera HOM05D000779 ORTHO05D000246 3.4e-27 125.6 137 56.2
Manes.05G184900 Manihot esculenta HOM05D000779 ORTHO05D000246 4.4e-27 125.2 142 52.1
QL02p001931 Quercus lobata HOM05D000779 ORTHO05D000246 4.4e-27 125.2 148 56.8
CSS0016559 Camellia sinensis var. sinensis HOM05D000779 ORTHO05D000246 7.5e-27 124.4 148 54.7
Gohir.D05G216500 Gossypium hirsutum HOM05D000779 ORTHO05D000246 4.9e-26 121.7 142 54.2
Gorai.009G223200 Gossypium raimondii HOM05D000779 ORTHO05D000246 1.1e-25 120.6 142 54.2
Atru.chr13.899 Acer truncatum HOM05D000779 ORTHO05D000246 3.2e-25 119.0 142 52.1
CiPaw.16G031100 Carya illinoinensis HOM05D000779 ORTHO05D000246 3.2e-25 119.0 144 50.7
Gohir.D06G024500 Gossypium hirsutum HOM05D000779 ORTHO05D000246 4.1e-25 118.6 145 52.4
SalBow7G4076 Salvia bowleyana HOM05D000779 ORTHO05D000246 4.1e-25 118.6 144 53.5
TWI56G0557 Tripterygium wilfordii HOM05D000779 ORTHO05D000246 4.1e-25 118.6 147 51.7
Nn6g34558 Nelumbo nucifera HOM05D000779 ORTHO05D000246 5.4e-25 118.2 143 51.0
Gohir.A06G027200 Gossypium hirsutum HOM05D000779 ORTHO05D000246 1.2e-24 117.1 140 52.1
Gorai.010G029000 Gossypium raimondii HOM05D000779 ORTHO05D000246 1.6e-24 116.7 145 51.7
Eucgr.F00106 Eucalyptus grandis HOM05D000779 ORTHO05D000246 3.5e-24 115.5 153 51.0
Cfa017915 Carpinus fangiana HOM05D000779 ORTHO05D000246 4.6e-24 115.2 152 50.0
Haze_18235 Corylus avellana HOM05D000779 ORTHO05D000246 4.6e-24 115.2 147 49.7
Nitab4.5_0005726g0010 Nicotiana tabacum HOM05D000779 ORTHO05D000246 6.0e-24 114.8 147 54.4
MBI16_g08499_MAGBIO Magnolia biondii HOM05D000779 ORTHO05D000246 1.3e-23 113.6 143 51.7
GSVIVG01009273001 Vitis vinifera HOM05D000779 ORTHO05D000246 1.9e-22 109.8 140 50.0
TWI12G0165 Tripterygium wilfordii HOM05D000779 ORTHO05D000246 2.5e-22 109.4 147 46.3
Actinidia10240 Actinidia chinensis HOM05D000779 ORTHO05D000246 1.1e-20 104.0 141 46.1
Lj4C78G5 Lonicera japonica HOM05D000779 ORTHO05D000246 1.8e-20 103.2 143 49.7
Nitab4.5_0001614g0180 Nicotiana tabacum HOM05D000779 ORTHO05D000246 5.8e-19 98.2 147 49.0
Cpa.g.sc160.20 Carica papaya HOM05D000779 ORTHO05D000246 9.8e-19 97.4 148 44.6
Prupe.1G416700 Prunus persica HOM05D000779 ORTHO05D000246 2.9e-18 95.9 158 44.9
DCAR_000394 Daucus carota HOM05D000779 ORTHO05D000246 3.2e-17 92.4 130 46.9
DCAR_019342 Daucus carota HOM05D000779 ORTHO05D000246 3.2e-17 92.4 130 46.9
MD15G1062700 Malus domestica HOM05D000779 ORTHO05D000246 4.1e-17 92.0 166 45.2
MD08G1075200 Malus domestica HOM05D000779 ORTHO05D000246 5.4e-17 91.7 166 44.6
Sed0020752 Sechium edule HOM05D000779 ORTHO05D000246 7.1e-17 91.3 143 41.3
SGA_v2.0_scaffold28G11847 Striga asiatica HOM05D000779 ORTHO05D000246 1.2e-16 90.5 152 41.4
TAR628G1242 Trochodendron aralioides HOM05D000779 ORTHO05D000246 1.2e-16 90.5 143 46.2
unitig_21.g20621 Utricularia gibba HOM05D000779 ORTHO05D000246 3.5e-16 89.0 157 45.2
Glyma.14G091200 Glycine max HOM05D000779 ORTHO05D000246 7.8e-16 87.8 154 42.9
ClCG05G017660 Citrullus lanatus HOM05D000779 ORTHO05D000246 1.7e-15 86.7 141 41.8
FAN20G2736 Fragaria x ananassa HOM05D000779 ORTHO05D000246 2.3e-15 86.3 152 43.4
RcHm_v2.0_Chr6g0310301 Rosa chinensis HOM05D000779 ORTHO05D000246 2.3e-15 86.3 156 41.0
FAN15G2645 Fragaria x ananassa HOM05D000779 ORTHO05D000246 5.1e-15 85.1 153 41.8
FAN27G2097 Fragaria x ananassa HOM05D000779 ORTHO05D000246 1.1e-14 84.0 153 41.2
FvH4_2g32400 Fragaria vesca HOM05D000779 ORTHO05D000246 3.3e-14 82.4 153 42.5
FAN24G2287 Fragaria x ananassa HOM05D000779 ORTHO05D000246 3.3e-14 82.4 153 42.5
Glyma.17G232205 Glycine max HOM05D000779 ORTHO05D000246 1.6e-13 80.1 154 40.9
Sed0018694 Sechium edule HOM05D000779 ORTHO05D000246 4.7e-13 78.6 147 39.5
CANSAT25G3577 Cannabis sativa HOM05D000779 ORTHO05D000246 1.1e-12 77.4 181 39.2
Lj5g0012934 Lotus japonicus HOM05D000779 ORTHO05D000246 1.1e-12 77.4 152 43.4
Glyma.04G049500 Glycine max HOM05D000779 ORTHO05D000246 1.4e-12 77.0 143 42.7
Lalb_Chr22g0355891 Lupinus albus HOM05D000779 ORTHO05D000246 1.4e-12 77.0 150 42.0
VMungo0647G0755 Vigna mungo HOM05D000779 ORTHO05D000246 1.8e-12 76.6 105 45.7
Ciclev10001508m.g Citrus clementina HOM05D000779 ORTHO05D000246 3.1e-12 75.9 150 42.7
Medtr1g017080 Medicago truncatula HOM05D000779 ORTHO05D000246 4.0e-12 75.5 105 48.6
Phvul.001G032200 Phaseolus vulgaris HOM05D000779 ORTHO05D000246 5.2e-12 75.1 107 43.9
MELO3C016850.2 Cucumis melo HOM05D000779 ORTHO05D000246 1.2e-11 73.9 142 38.7
vmacro21400 Vaccinium macrocarpon HOM05D000779 ORTHO05D000246 1.2e-11 73.9 145 38.6
Lalb_Chr14g0367951 Lupinus albus HOM05D000779 ORTHO05D000246 1.5e-11 73.6 156 39.1
CsaV3_4G035390 Cucumis sativus L. HOM05D000779 ORTHO05D000246 4.4e-11 72.0 146 40.4
PGSC0003DMG400004953 Solanum tuberosum HOM05D000779 ORTHO05D000246 9.9e-11 70.9 144 38.9
MBI16_g05023_MAGBIO Magnolia biondii HOM05D000779 ORTHO05D000246 1.7e-10 70.1 146 34.9
HanXRQChr05g0163601 Helianthus annuus HOM05D000779 ORTHO05D000246 6.4e-10 68.2 142 38.7
Psat0s1648g0080 Pisum sativum HOM05D000779 ORTHO05D000246 6.4e-10 68.2 153 35.3
SHI22935 Sapria himalayana HOM05D000779 ORTHO05D000001 1.4e-09 67.0 144 37.5
CAN.G416.42 Capsicum annuum HOM05D000779 ORTHO05D000246 1.9e-09 66.6 83 49.4
Lalb_Chr23g0267711 Lupinus albus HOM05D000779 ORTHO05D000246 2.4e-09 66.2 152 39.5
Sopen00g009170 Solanum pennellii HOM05D000779 ORTHO05D000246 4.1e-09 65.5 138 35.5
Lsat_1_v5_gn_6_108340 Lactuca sativa HOM05D000779 ORTHO05D000246 2.1e-08 63.2 154 35.7
CDE02G3223 Ceratophyllum demersum HOM05D000779 ORTHO05D000246 1.0e-07 60.8 100 39.0
DCAR_012830 Daucus carota HOM05D000779 ORTHO05D000246 1.0e-07 60.8 92 44.6
PGR083G0232 Punica granatum HOM05D000779 ORTHO05D000246 1.3e-07 60.5 116 37.9
Ah.11g039240 Amaranthus hybridus HOM05D000779 ORTHO05D000246 2.3e-07 59.7 122 36.9
arahy.Tifrunner.gnm1.ann1.0VJ2KM Arachis hypogaea HOM05D000779 ORTHO05D000246 3.9e-07 58.9 29 89.7
THA.LOC104825802 Tarenaya hassleriana HOM05D000779 ORTHO05D000246 3.9e-07 58.9 91 36.3
CDE01G0469 Ceratophyllum demersum HOM05D000779 ORTHO05D000246 5.1e-07 58.5 50 56.0
CARHR259260 Cardamine hirsuta HOM05D000779 ORTHO05D000246 6.6e-07 58.2 80 38.8
arahy.Tifrunner.gnm1.ann1.JCQF9U Arachis hypogaea HOM05D000779 ORTHO05D000246 1.5e-06 57.0 151 36.4
CDE06G2668 Ceratophyllum demersum HOM05D000779 ORTHO05D000246 1.5e-06 57.0 141 36.2
arahy.Tifrunner.gnm1.ann1.A8JEVC Arachis hypogaea HOM05D000779 ORTHO05D000246 1.9e-06 56.6 37 67.6
Aa31sc59G10 Aethionema arabicum HOM05D000779 ORTHO05D000246 3.3e-06 55.8 93 40.9
unitig_8.g4862 Utricularia gibba HOM05D000779 ORTHO05D000246 3.3e-06 55.8 145 33.1
Hund05256 Selenicereus undatus HOM05D000779 ORTHO05D000246 4.3e-06 55.5 161 31.1
THA.LOC104806966 Tarenaya hassleriana HOM05D000779 ORTHO05D000246 4.3e-06 55.5 103 35.9
arahy.Tifrunner.gnm1.ann1.FU8PR5 Arachis hypogaea HOM05D000779 ORTHO05D000246 5.6e-06 55.1 81 42.0


User provided reference genes

Program Settings