Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.2215 Avicennia marina HOM05D004962 ORTHO05D006249 0.0e+00 1723.0 835 100.0
SalBow8G2488 Salvia bowleyana HOM05D004962 ORTHO05D006249 0.0e+00 1460.7 836 83.7
SGA_v2.0_scaffold170G38808 Striga asiatica HOM05D004962 ORTHO05D006249 0.0e+00 1392.5 838 82.3
Migut.E00376 Erythranthe guttata HOM05D004962 ORTHO05D006249 0.0e+00 1391.7 837 80.3
Nitab4.5_0002112g0120 Nicotiana tabacum HOM05D004962 ORTHO05D006249 0.0e+00 1349.3 828 76.9
Peaxi162Scf00179g00544 Petunia axillaris HOM05D004962 ORTHO05D006249 0.0e+00 1338.2 826 76.3
Nitab4.5_0000694g0070 Nicotiana tabacum HOM05D004962 ORTHO05D006249 0.0e+00 1332.0 828 75.6
Dinv16141 Davidia involucrata HOM05D004962 ORTHO05D006249 0.0e+00 1324.3 836 76.2
Sopen06g003160 Solanum pennellii HOM05D004962 ORTHO05D006249 0.0e+00 1322.8 826 75.9
Solyc06g008310.3 Solanum lycopersicum HOM05D004962 ORTHO05D006249 0.0e+00 1315.1 826 75.4
PGSC0003DMG400025502 Solanum tuberosum HOM05D004962 ORTHO05D006249 0.0e+00 1314.3 826 74.9
CSS0022436 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 0.0e+00 1308.1 828 74.9
Lj3A879T38 Lonicera japonica HOM05D004962 ORTHO05D006249 0.0e+00 1307.0 830 74.7
QL01p010772 Quercus lobata HOM05D004962 ORTHO05D006249 0.0e+00 1298.5 843 73.7
Sabra10G0090000 Salix brachista HOM05D004962 ORTHO05D006249 0.0e+00 1288.9 829 73.6
DCAR_007266 Daucus carota HOM05D004962 ORTHO05D006249 0.0e+00 1288.1 822 74.7
Atru.chr11.243 Acer truncatum HOM05D004962 ORTHO05D006249 0.0e+00 1283.9 838 73.3
TWI31G0370 Tripterygium wilfordii HOM05D004962 ORTHO05D006249 0.0e+00 1283.1 837 73.4
Cc11_g09620 Coffea canephora HOM05D004962 ORTHO05D006249 0.0e+00 1280.0 830 72.5
Manes.14G107300 Manihot esculenta HOM05D004962 ORTHO05D006249 0.0e+00 1279.6 837 72.5
MD13G1035000 Malus domestica HOM05D004962 ORTHO05D006249 0.0e+00 1278.8 835 73.2
CSS0034119 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 0.0e+00 1278.5 828 73.7
CANSAT01G1665 Cannabis sativa HOM05D004962 ORTHO05D006249 0.0e+00 1274.2 836 73.1
CiPaw.05G242900 Carya illinoinensis HOM05D004962 ORTHO05D006249 0.0e+00 1274.2 842 73.0
Potri.010G119600 Populus trichocarpa HOM05D004962 ORTHO05D006249 0.0e+00 1273.8 829 72.9
Ciclev10014261m.g Citrus clementina HOM05D004962 ORTHO05D006249 0.0e+00 1271.9 834 72.2
Prupe.1G317200 Prunus persica HOM05D004962 ORTHO05D006249 0.0e+00 1268.1 837 72.2
Rhsim09G0103500 Rhododendron simsii HOM05D004962 ORTHO05D006249 0.0e+00 1266.9 830 73.5
Aqoxy3G04030 Aquilegia oxysepala HOM05D004962 ORTHO05D006249 0.0e+00 1266.1 832 72.8
Oeu048367.1 Olea europaea HOM05D004962 ORTHO05D006249 0.0e+00 1265.8 944 68.3
MD16G1036900 Malus domestica HOM05D004962 ORTHO05D006249 0.0e+00 1265.4 836 72.4
Nn4g23964 Nelumbo nucifera HOM05D004962 ORTHO05D006249 0.0e+00 1262.3 834 72.3
Gorai.011G207200 Gossypium raimondii HOM05D004962 ORTHO05D006249 0.0e+00 1259.2 830 72.2
Gohir.D10G184801 Gossypium hirsutum HOM05D004962 ORTHO05D006249 0.0e+00 1258.8 830 72.2
RcHm_v2.0_Chr4g0434371 Rosa chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1257.7 834 72.7
FvH4_4g26660 Fragaria vesca HOM05D004962 ORTHO05D006249 0.0e+00 1254.6 836 71.4
GSVIVG01011835001 Vitis vinifera HOM05D004962 ORTHO05D006249 0.0e+00 1254.2 829 73.1
FAN12G0536 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1252.3 836 71.3
FAN12G3194 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1251.5 836 71.3
FAN07G0368 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1250.3 841 71.2
FAN22G2325 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1249.2 836 71.4
Hund20741 Selenicereus undatus HOM05D004962 ORTHO05D006249 0.0e+00 1249.2 826 71.9
FAN17G1054 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1248.4 842 71.1
Thecc.02G221200 Theobroma cacao HOM05D004962 ORTHO05D006249 0.0e+00 1244.2 831 71.6
Duzib248G1599 Durio zibethinus HOM05D004962 ORTHO05D006249 0.0e+00 1243.0 830 71.1
Haze_00658 Corylus avellana HOM05D004962 ORTHO05D006249 0.0e+00 1239.6 974 63.6
PGR119G1728 Punica granatum HOM05D004962 ORTHO05D006249 0.0e+00 1234.6 839 70.1
Phvul.007G032400 Phaseolus vulgaris HOM05D004962 ORTHO05D006249 0.0e+00 1233.8 843 70.5
Glyma.20G121000 Glycine max HOM05D004962 ORTHO05D006249 0.0e+00 1233.0 834 70.4
HanXRQChr08g0213241 Helianthus annuus HOM05D004962 ORTHO05D006249 0.0e+00 1233.0 830 71.3
Sc04g0005990 Simmondsia chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1230.3 831 70.8
VMungo0720G3109 Vigna mungo HOM05D004962 ORTHO05D006249 0.0e+00 1228.4 839 70.7
Lj5g0019473 Lotus japonicus HOM05D004962 ORTHO05D006249 0.0e+00 1226.5 832 70.7
Lalb_Chr06g0165831 Lupinus albus HOM05D004962 ORTHO05D006249 0.0e+00 1225.7 842 69.8
Eucgr.G02236 Eucalyptus grandis HOM05D004962 ORTHO05D006249 0.0e+00 1223.4 835 70.4
Glyma.10G270300 Glycine max HOM05D004962 ORTHO05D006249 0.0e+00 1219.1 841 69.9
AUR62014113 Chenopodium quinoa HOM05D004962 ORTHO05D006249 0.0e+00 1216.8 827 71.2
Sed0022508 Sechium edule HOM05D004962 ORTHO05D006249 0.0e+00 1215.3 840 68.9
Medtr1g109490 Medicago truncatula HOM05D004962 ORTHO05D006249 0.0e+00 1211.4 835 69.6
Actinidia14925 Actinidia chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1208.4 792 74.1
Ca_06893_v3 Cicer arietinum L. HOM05D004962 ORTHO05D006249 0.0e+00 1206.0 837 69.2
ECA233G5272 Erigeron canadensis HOM05D004962 ORTHO05D006249 0.0e+00 1204.5 829 70.2
MELO3C012277.2 Cucumis melo HOM05D004962 ORTHO05D006249 0.0e+00 1203.7 844 69.5
Psat6g224120 Pisum sativum HOM05D004962 ORTHO05D006249 0.0e+00 1199.1 834 69.9
arahy.Tifrunner.gnm1.ann1.HFR8A2 Arachis hypogaea HOM05D004962 ORTHO05D006249 0.0e+00 1196.4 832 68.5
EL10Ac6g14300 Beta vulgaris HOM05D004962 ORTHO05D006249 0.0e+00 1195.3 852 67.7
AUR62002806 Chenopodium quinoa HOM05D004962 ORTHO05D006249 0.0e+00 1194.5 831 70.3
CsaV3_5G034620 Cucumis sativus L. HOM05D004962 ORTHO05D006249 0.0e+00 1194.5 841 69.0
Lsat_1_v5_gn_8_42541 Lactuca sativa HOM05D004962 ORTHO05D006249 0.0e+00 1191.4 829 69.7
arahy.Tifrunner.gnm1.ann1.I79V4W Arachis hypogaea HOM05D004962 ORTHO05D006249 0.0e+00 1187.6 831 68.4
ClCG05G022460 Citrullus lanatus HOM05D004962 ORTHO05D006249 0.0e+00 1186.0 872 66.9
PSO063G7634 Papaver somniferum HOM05D004962 ORTHO05D006249 0.0e+00 1184.5 850 69.3
MBI09_g25150_MAGBIO Magnolia biondii HOM05D004962 ORTHO05D006249 0.0e+00 1172.5 832 68.1
PSO782G5688 Papaver somniferum HOM05D004962 ORTHO05D006249 0.0e+00 1169.8 857 68.1
C06p04260 Brassica napus HOM05D004962 ORTHO05D006249 0.0e+00 1165.2 829 67.3
Aa31LG10G4460 Aethionema arabicum HOM05D004962 ORTHO05D006249 0.0e+00 1164.1 828 66.8
BolC6t35550H Brassica oleracea HOM05D004962 ORTHO05D006249 0.0e+00 1162.5 830 67.3
BcaC08g43144 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1161.0 829 67.2
QL01p010697 Quercus lobata HOM05D004962 ORTHO05D006249 0.0e+00 1161.0 833 68.4
Thhalv10011237m.g Eutrema salsugineum HOM05D004962 ORTHO05D006249 0.0e+00 1160.2 832 67.1
AL1G56890 Arabidopsis lyrata HOM05D004962 ORTHO05D006249 0.0e+00 1151.0 837 66.5
THA.LOC104811357 Tarenaya hassleriana HOM05D004962 ORTHO05D006249 0.0e+00 1151.0 833 67.5
BraA06t23589Z Brassica rapa HOM05D004962 ORTHO05D006249 0.0e+00 1149.4 827 66.7
Carub.0001s3872 Capsella rubella HOM05D004962 ORTHO05D006249 0.0e+00 1149.4 832 67.2
A06p03820 Brassica napus HOM05D004962 ORTHO05D006249 0.0e+00 1148.3 827 66.7
Sp1g36410 Schrenkiella parvula HOM05D004962 ORTHO05D006249 0.0e+00 1146.7 832 66.6
AT1G49540 Arabidopsis thaliana HOM05D004962 ORTHO05D006249 0.0e+00 1144.0 837 66.5
BcaB04g17325 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1140.6 831 66.1
BcaB07g33669 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1139.8 828 66.4
CARHR039570 Cardamine hirsuta HOM05D004962 ORTHO05D006249 0.0e+00 1135.6 831 66.3
vmacro10604 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 0.0e+00 1125.5 789 69.6
ATR0759G035 Amborella trichopoda HOM05D004962 ORTHO05D006249 0.0e+00 1089.7 835 62.5
Os08g0493900 Oryza sativa ssp. japonica HOM05D004962 ORTHO05D006249 0.0e+00 1089.3 844 62.1
TPR.G18855 Trifolium pratense HOM05D004962 ORTHO05D006249 0.0e+00 1080.1 758 68.3
Zm00001eb033820 Zea mays HOM05D004962 ORTHO05D006249 0.0e+00 1075.8 832 62.7
CDE06G0233 Ceratophyllum demersum HOM05D004962 ORTHO05D006249 2.1e-304 1048.9 826 61.3
Ah.03g138470 Amaranthus hybridus HOM05D004962 ORTHO05D006249 1.2e-288 996.5 669 72.0
SHI16242 Sapria himalayana HOM05D004962 ORTHO05D006249 2.0e-286 989.2 832 58.8
Gohir.A10G178200 Gossypium hirsutum HOM05D004962 ORTHO05D006249 8.5e-274 947.2 637 71.6
Cpa.g.sc65.71 Carica papaya HOM05D004962 ORTHO05D006249 2.3e-271 939.1 829 58.3
TAR371G0254 Trochodendron aralioides HOM05D004962 ORTHO05D006249 1.4e-260 903.3 582 73.9
Mapoly0064s0032 Marchantia polymorpha HOM05D004962 ORTHO05D006249 1.3e-245 853.6 890 50.4
Pp3c16_8750 Physcomitrium patens HOM05D004962 ORTHO05D005286 1.3e-245 853.6 856 50.1
SMO364G0112 Selaginella moellendorffii HOM05D004962 ORTHO05D006249 6.6e-242 841.3 854 51.5
unitig_699.g19525 Utricularia gibba HOM05D004962 ORTHO05D006249 8.0e-240 834.3 835 53.9
COL.COLO4_32127 Corchorus olitorius HOM05D004962 ORTHO05D006249 3.9e-170 602.8 461 64.0
COL.COLO4_32126 Corchorus olitorius HOM05D004962 ORTHO05D006249 5.2e-162 575.9 399 67.4
HPP92_023439 Vanilla planifolia HOM05D004962 ORTHO05D006249 4.7e-147 526.2 400 64.8
Aa31LG10G4060 Aethionema arabicum HOM05D004962 ORTHO05D006249 7.8e-134 482.3 364 63.5
HPP92_023440 Vanilla planifolia HOM05D004962 ORTHO05D006249 6.4e-128 462.6 359 62.4
Actinidia16688 Actinidia chinensis HOM05D004962 ORTHO05D006249 6.6e-117 426.0 263 74.9
TAR371G0924 Trochodendron aralioides HOM05D004962 ORTHO05D006249 8.7e-101 372.5 237 75.1
Sed0004719 Sechium edule HOM05D004962 ORTHO05D006249 5.6e-100 369.8 821 34.0
MD07G1142000 Malus domestica HOM05D004962 ORTHO05D006249 1.1e-98 365.5 303 65.0
Cfa023883 Carpinus fangiana HOM05D004962 ORTHO05D006249 1.8e-98 364.8 866 32.2
ClCG04G012840 Citrullus lanatus HOM05D004962 ORTHO05D001482 1.8e-98 364.8 483 45.3
SEGI_20231 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 1.4e-95 355.1 298 58.4
Cre10.g462750 Chlamydomonas reinhardtii HOM05D004962 ORTHO05D006249 2.7e-94 350.9 1180 26.9
SEGI_12856 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 2.1e-91 341.3 265 61.1
TAR371G1111 Trochodendron aralioides HOM05D004962 ORTHO05D006249 4.9e-88 330.1 195 76.4
Dinv31590 Davidia involucrata HOM05D004962 ORTHO05D006249 2.1e-86 324.7 202 76.7
MD07G1141900 Malus domestica HOM05D004962 ORTHO05D006249 1.3e-83 315.5 192 76.0
MCO16G399 Micromonas commoda HOM05D004962 ORTHO05D006249 1.3e-83 315.5 808 30.7
Dinv31591 Davidia involucrata HOM05D004962 ORTHO05D006249 5.8e-81 306.6 242 65.7
BcaC07g37033 Brassica carinata HOM05D004962 ORTHO05D006249 1.6e-62 245.4 224 54.9
C08p04030 Brassica napus HOM05D004962 ORTHO05D006249 4.4e-52 210.7 193 52.8
SEGI_09159 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 2.8e-43 181.4 155 58.7
A08p03840 Brassica napus HOM05D004962 ORTHO05D006249 6.3e-43 180.3 209 44.0
BraA08t32413Z Brassica rapa HOM05D004962 ORTHO05D006249 6.3e-43 180.3 209 44.0
PGSC0003DMG400024407 Solanum tuberosum HOM05D004962 ORTHO05D006249 5.9e-41 173.7 99 80.8
vmacro10603 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 1.3e-40 172.6 125 65.6
TAR371G0141 Trochodendron aralioides HOM05D004962 ORTHO05D006249 1.6e-38 165.6 97 76.3
PGSC0003DMG400031444 Solanum tuberosum HOM05D004962 ORTHO05D006249 2.7e-33 148.3 78 87.2
TAR371G0959 Trochodendron aralioides HOM05D004962 ORTHO05D006249 3.6e-30 137.9 96 70.8
TPR.G18842 Trifolium pratense HOM05D004962 ORTHO05D006249 1.5e-28 132.5 72 83.3
Dinv31589 Davidia involucrata HOM05D004962 ORTHO05D006249 1.7e-27 129.0 97 61.9
CBR_g37253 Chara braunii HOM05D004962 ORTHO05D000048 5.9e-25 120.6 190 38.9
C08p04020 Brassica napus HOM05D004962 ORTHO05D006249 7.7e-25 120.2 69 81.2
SEGI_19116 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 5.2e-21 107.5 59 78.0
A05p20570 Brassica napus HOM05D004962 ORTHO05D040710 3.4e-20 104.8 151 44.4
TAR371G1015 Trochodendron aralioides HOM05D004962 ORTHO05D006249 4.4e-20 104.4 64 75.0
BolC8t47195H Brassica oleracea HOM05D004962 ORTHO05D006249 2.0e-17 95.5 101 42.6
BraA05t20967Z Brassica rapa HOM05D004962 ORTHO05D040710 3.5e-17 94.7 150 41.3
BcaB02g11086 Brassica carinata HOM05D004962 ORTHO05D006249 7.8e-17 93.6 151 38.4
Actinidia16687 Actinidia chinensis HOM05D004962 ORTHO05D006249 1.7e-16 92.4 52 76.9
BolC8t47194H Brassica oleracea HOM05D004962 ORTHO05D006249 1.8e-13 82.4 100 43.0
Psat5g186320 Pisum sativum HOM05D000280 ORTHO05D004446 3.7e-11 74.7 58 46.6
RcHm_v2.0_Chr7g0200531 Rosa chinensis HOM05D004962 ORTHO05D006249 5.4e-10 70.9 86 45.3
Sp1g36390 Schrenkiella parvula HOM05D004962 ORTHO05D006249 1.3e-08 66.2 105 34.3
AL8G40810 Arabidopsis lyrata HOM05D001610 ORTHO05D001585 2.5e-07 62.0 263 25.1
Ciclev10014731m.g Citrus clementina HOM05D001610 ORTHO05D001585 3.3e-07 61.6 140 24.3
FAN15G1883 Fragaria x ananassa HOM05D002634 ORTHO05D003100 2.1e-06 58.9 110 32.7
Atru.chr11.33 Acer truncatum HOM05D001610 ORTHO05D001585 4.7e-06 57.8 141 28.4
Sabra16G0123600 Salix brachista HOM05D000102 ORTHO05D005812 4.7e-06 57.8 106 30.2
Sabra16G0131600 Salix brachista HOM05D004768 ORTHO05D000138 4.7e-06 57.8 106 30.2
THA.LOC104818401 Tarenaya hassleriana HOM05D001610 ORTHO05D001585 4.7e-06 57.8 89 31.5
Mapoly0049s0059 Marchantia polymorpha HOM05D005323 ORTHO05D006820 6.2e-06 57.4 118 29.7
CiPaw.16G000500 Carya illinoinensis HOM05D001610 ORTHO05D001585 8.0e-06 57.0 139 28.1
Mapoly0104s0042 Marchantia polymorpha HOM05D002634 ORTHO05D003100 8.0e-06 57.0 108 33.3


User provided reference genes

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