Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.22108 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 2312.7 1168 100.0
MSTRG.24931 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1971.8 1169 85.2
SalBow7G2315 Salvia bowleyana HOM05D003952 ORTHO05D005083 0.0e+00 1940.2 1172 84.9
Migut.N02951 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1931.8 1168 84.5
Cc10_g15270 Coffea canephora HOM05D003952 ORTHO05D005083 0.0e+00 1878.6 1170 81.4
Oeu051283.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1871.3 1170 82.1
Migut.C00380 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1863.2 1170 82.6
SGA_v2.0_scaffold133G34641 Striga asiatica HOM05D003952 ORTHO05D005083 0.0e+00 1858.2 1168 81.8
Oeu002069.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1832.8 1210 78.9
Peaxi162Scf00360g00418 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1808.9 1172 79.4
Thecc.08G159400 Theobroma cacao HOM05D003952 ORTHO05D005083 0.0e+00 1806.2 1173 78.5
CSS0032669 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1796.6 1174 78.7
CAN.G495.15 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1790.0 1158 78.9
Gohir.D05G248000 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1790.0 1173 78.2
QL02p038017 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1788.5 1173 77.8
Gorai.009G258800 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1787.3 1173 77.9
QL02p037499 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1786.9 1173 77.7
Duzib093G1052 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1786.2 1173 78.0
Gohir.A05G246500 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1783.8 1173 78.0
Sopen04g027970 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1783.1 1171 77.9
Haze_17805 Corylus avellana HOM05D003952 ORTHO05D005083 0.0e+00 1781.1 1174 77.6
Cfa018280 Carpinus fangiana HOM05D003952 ORTHO05D005083 0.0e+00 1780.4 1174 77.9
Solyc04g071990.3 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1780.4 1171 77.7
Prupe.8G040600 Prunus persica HOM05D003952 ORTHO05D005083 0.0e+00 1779.6 1174 78.0
Potri.005G196700 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1774.2 1173 77.6
Nitab4.5_0000099g0200 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1771.5 1201 76.6
MD10G1034200 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1769.2 1174 77.4
CSS0017406 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1768.8 1174 78.3
CiPaw.15G012400 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1767.7 1176 77.0
Nitab4.5_0000872g0040 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1767.3 1168 77.6
MD05G1033400 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1766.9 1174 77.6
RcHm_v2.0_Chr6g0274251 Rosa chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1766.1 1184 76.7
Potri.002G064400 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1757.3 1172 77.3
Nitab4.5_0004270g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1756.5 1189 76.5
DCAR_001164 Daucus carota HOM05D003952 ORTHO05D005083 0.0e+00 1752.3 1172 76.3
FvH4_2g13030 Fragaria vesca HOM05D003952 ORTHO05D005083 0.0e+00 1749.9 1183 76.1
Atru.chr13.2009 Acer truncatum HOM05D003952 ORTHO05D005083 0.0e+00 1748.0 1172 76.0
Solyc12g056650.2 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1746.5 1175 76.0
Sopen12g029310 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1746.5 1175 76.1
TAR628G1191 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 1744.9 1174 76.3
Duzib116G0427 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1742.2 1173 76.6
Glyma.10G221500 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1741.5 1176 76.4
Phvul.007G083500 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1737.2 1197 75.4
CAN.G26.47 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1736.1 1176 75.9
Eucgr.F02686 Eucalyptus grandis HOM05D003952 ORTHO05D005083 0.0e+00 1735.3 1168 76.5
FAN15G1441 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1734.9 1217 74.0
Medtr1g098160 Medicago truncatula HOM05D003952 ORTHO05D005083 0.0e+00 1731.5 1175 75.3
FAN27G2428 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1731.1 1221 73.8
FAN24G3461 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1730.7 1221 73.6
Sabra05G0149800 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1727.6 1228 73.2
Lalb_Chr02g0141571 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1727.2 1175 75.7
VMungo0720G2354 Vigna mungo HOM05D003952 ORTHO05D005083 0.0e+00 1724.9 1198 74.9
FAN20G1325 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1724.5 1221 73.5
TWI60G0338 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1724.1 1173 75.4
arahy.Tifrunner.gnm1.ann1.2T81X8 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1723.4 1210 74.1
Nitab4.5_0005673g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1720.7 1169 76.0
Gorai.005G077100 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1720.3 1174 76.1
vmacro01493 Vaccinium macrocarpon HOM05D003952 ORTHO05D005083 0.0e+00 1720.3 1211 74.8
arahy.Tifrunner.gnm1.ann1.5NL3D9 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1719.5 1210 74.0
Gohir.A02G062600 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1718.7 1173 76.2
Rhsim11G0087700 Rhododendron simsii HOM05D003952 ORTHO05D005083 0.0e+00 1716.0 1215 74.7
Gohir.D02G068200 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1712.6 1174 75.9
Lalb_Chr06g0161721 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1710.7 1173 75.4
Sabra02G0051500 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1709.5 1229 72.6
Sc20g0003770 Simmondsia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1709.5 1173 74.9
Lj5g0005273 Lotus japonicus HOM05D003952 ORTHO05D005083 0.0e+00 1705.3 1175 74.8
Glyma.20G170000 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1703.7 1174 75.0
PGR042G0685 Punica granatum HOM05D003952 ORTHO05D005083 0.0e+00 1701.0 1175 74.9
TWI34G1640 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1700.6 1171 75.0
Nn008s41421 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1700.3 1179 74.9
TWI32G0799 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1700.3 1173 74.5
CANSAT25G0323 Cannabis sativa HOM05D003952 ORTHO05D005083 0.0e+00 1699.9 1174 75.5
Ca_10663_v3 Cicer arietinum L. HOM05D003952 ORTHO05D005083 0.0e+00 1681.8 1233 71.4
arahy.Tifrunner.gnm1.ann1.SZWP5S Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1680.6 1174 74.5
CsaV3_7G024490 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1677.9 1173 74.3
Sed0012183 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1673.7 1171 73.8
ECA246G0004 Erigeron canadensis HOM05D003952 ORTHO05D005083 0.0e+00 1673.3 1179 73.9
MELO3C030034.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1672.9 1173 73.6
Glyma.16G163200 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1670.2 1173 73.5
Nn5g28824 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1669.1 1176 73.8
Phvul.004G088300 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1669.1 1173 74.1
CsaV3_6G005020 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1667.9 1173 73.4
Peaxi162Scf00160g01744 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1663.7 1202 73.0
MELO3C024067.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1662.9 1173 73.8
MBI04_g08946_MAGBIO Magnolia biondii HOM05D003952 ORTHO05D005083 0.0e+00 1661.7 1175 72.4
arahy.Tifrunner.gnm1.ann1.AF3FG0 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1661.4 1208 72.4
Sed0019934 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1660.6 1173 73.0
AUR62034894 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1658.7 1233 70.6
ClCG08G007370 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1657.5 1173 73.3
EL10Ac1g01605 Beta vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1652.1 1234 70.3
CARHR023130 Cardamine hirsuta HOM05D003952 ORTHO05D005083 0.0e+00 1651.3 1175 72.9
AT1G22770 Arabidopsis thaliana HOM05D003952 ORTHO05D005083 0.0e+00 1650.6 1176 73.0
Carub.0001s2228 Capsella rubella HOM05D003952 ORTHO05D005083 0.0e+00 1648.6 1177 73.0
HanXRQChr11g0320211 Helianthus annuus HOM05D003952 ORTHO05D005083 0.0e+00 1647.5 1173 73.7
Lsat_1_v5_gn_6_101520 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1647.5 1171 73.4
AL1G36320 Arabidopsis lyrata HOM05D003952 ORTHO05D005083 0.0e+00 1645.9 1180 73.2
Thhalv10006603m.g Eutrema salsugineum HOM05D003952 ORTHO05D005083 0.0e+00 1642.5 1175 72.3
THA.LOC104810466 Tarenaya hassleriana HOM05D003952 ORTHO05D005083 0.0e+00 1642.1 1174 72.7
Aa31LG7G6730 Aethionema arabicum HOM05D003952 ORTHO05D005083 0.0e+00 1641.7 1176 72.4
TPR.G17028 Trifolium pratense HOM05D003952 ORTHO05D005083 0.0e+00 1638.6 1177 72.3
Sp1g20280 Schrenkiella parvula HOM05D003952 ORTHO05D005083 0.0e+00 1634.4 1177 72.0
Lj7A383T43 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1634.0 1186 72.8
Aqoxy6G00415 Aquilegia oxysepala HOM05D003952 ORTHO05D005083 0.0e+00 1633.6 1181 72.1
unitig_747.g21544 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1628.6 1169 73.3
PSO170G5657 Papaver somniferum HOM05D003952 ORTHO05D005083 0.0e+00 1615.9 1185 70.8
A09p41970 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1607.4 1175 71.2
Lsat_1_v5_gn_9_42181 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1606.7 1189 71.2
C05p21880 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1604.3 1174 71.4
Ciclev10004044m.g Citrus clementina HOM05D003952 ORTHO05D005083 0.0e+00 1601.3 1101 75.3
Psat6g190640 Pisum sativum HOM05D003952 ORTHO05D005083 0.0e+00 1601.3 1076 76.9
ClCG09G010210 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1591.6 1151 72.5
Manes.18G095000 Manihot esculenta HOM05D003952 ORTHO05D005083 0.0e+00 1569.3 1177 70.7
Zm00001eb337600 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1566.6 1175 69.7
Os01g0182600 Oryza sativa ssp. japonica HOM05D003952 ORTHO05D005083 0.0e+00 1565.8 1192 69.2
ATR1120G094 Amborella trichopoda HOM05D003952 ORTHO05D005083 0.0e+00 1557.0 1149 70.7
Zm00001eb122110 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1549.3 1187 68.5
HPP92_008686 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1514.6 1172 68.0
HPP92_008674 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1512.3 1172 67.7
AUR62026637 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1507.7 1110 71.7
Dinv25899 Davidia involucrata HOM05D003952 ORTHO05D005083 0.0e+00 1483.4 948 80.3
Ah.05g168180 Amaranthus hybridus HOM05D003952 ORTHO05D005083 0.0e+00 1385.2 1190 63.6
CiPaw.16G008300 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1385.2 948 75.1
unitig_32.g11167 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1360.9 1169 63.6
COL.COLO4_13783 Corchorus olitorius HOM05D003952 ORTHO05D005083 0.0e+00 1343.9 1034 69.7
Lalb_Chr01g0009771 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1323.5 969 71.6
Lj4C703T11 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1311.2 957 72.4
Sed0012813 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1308.9 946 72.4
PGSC0003DMG400018791 Solanum tuberosum HOM05D003952 ORTHO05D005083 0.0e+00 1307.0 888 75.9
Actinidia29549 Actinidia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1231.1 969 68.8
CSS0023419 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1226.5 976 69.0
Oeu022058.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1202.6 812 77.7
SalBow6G3936 Salvia bowleyana HOM05D003952 ORTHO05D005083 0.0e+00 1138.3 1164 57.5
TAR381G0458 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 1138.3 815 73.1
BcaNung06971 Brassica carinata HOM05D003952 ORTHO05D005083 0.0e+00 1137.9 804 73.6
VMungo0464G1608 Vigna mungo HOM05D003952 ORTHO05D005083 0.0e+00 1088.9 807 71.4
Hma1.2p1_0678F.1_g202015 Hydrangea macrophylla HOM05D003952 ORTHO05D005083 4.8e-299 1031.6 724 74.7
SMO367G0140 Selaginella moellendorffii HOM05D003952 ORTHO05D005083 5.0e-288 995.0 1180 47.7
Mapoly0019s0145 Marchantia polymorpha HOM05D003952 ORTHO05D005083 4.2e-287 991.9 1202 47.2
GSVIVG01001406001 Vitis vinifera HOM05D003952 ORTHO05D005083 5.5e-271 938.3 541 86.1
CDE04G2370 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 6.6e-248 861.7 719 65.2
Cpa.g.sc26.82 Carica papaya HOM05D003952 ORTHO05D005083 2.9e-235 819.7 604 72.8
CDE04G1363 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 1.4e-189 667.9 431 76.6
VMungo0464G1293 Vigna mungo HOM05D003952 ORTHO05D005083 2.8e-166 590.5 360 81.4
TAR381G1674 Trochodendron aralioides HOM05D003952 ORTHO05D005083 9.5e-138 495.7 307 78.8
Actinidia04747 Actinidia chinensis HOM05D003952 ORTHO05D005083 2.0e-135 488.0 896 39.7
BraA09t39685Z Brassica rapa HOM05D003952 ORTHO05D005083 1.2e-129 468.8 307 75.6
BolC5t30883H Brassica oleracea HOM05D003952 ORTHO05D005083 1.6e-129 468.4 307 75.6
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 4.4e-127 460.3 614 46.7
AagrBONN_evm.TU.Sc2ySwM_117.1660 Anthoceros agrestis HOM05D003952 ORTHO05D005083 1.8e-120 438.3 804 36.1
GSVIVG01001405001 Vitis vinifera HOM05D003952 ORTHO05D005083 1.2e-119 435.6 285 78.9
CBR_g22347 Chara braunii HOM05D003952 ORTHO05D005083 4.2e-109 400.6 1328 28.6
Cpa.g.sc26.81 Carica papaya HOM05D003952 ORTHO05D005083 5.8e-95 353.6 229 75.5
CDE04G3041 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 2.0e-87 328.6 508 43.1
Lj4A703G54 Lonicera japonica HOM05D003952 ORTHO05D005083 1.6e-84 318.9 197 79.2
Lsat_1_v5_gn_2_63220 Lactuca sativa HOM05D003952 ORTHO05D005083 7.4e-82 310.1 281 59.8
HanXRQChr10g0278641 Helianthus annuus HOM05D003952 ORTHO05D005083 1.1e-77 296.2 206 71.4
COL.COLO4_13782 Corchorus olitorius HOM05D003952 ORTHO05D005083 1.4e-77 295.8 182 79.1
CAN.G1225.1 Capsicum annuum HOM05D003952 ORTHO05D008201 7.4e-74 283.5 188 74.5
Lsat_1_v5_gn_8_75660 Lactuca sativa HOM05D003952 ORTHO05D005083 7.2e-69 266.9 258 58.1
Sopen10g022170 Solanum pennellii HOM05D003952 ORTHO05D011221 1.3e-65 256.1 145 86.9
Lsat_1_v5_gn_5_129380 Lactuca sativa HOM05D003952 ORTHO05D015589 8.2e-65 253.4 217 64.5
Lalb_Chr01g0009781 Lupinus albus HOM05D003952 ORTHO05D005083 6.5e-62 243.8 187 69.0
Lsat_1_v5_gn_3_78320 Lactuca sativa HOM05D003952 ORTHO05D005083 4.7e-52 211.1 132 82.6
CANSAT25G0696 Cannabis sativa HOM05D003952 ORTHO05D005083 2.2e-46 192.2 118 82.2
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 6.5e-46 190.7 125 76.0
Psat5g166880 Pisum sativum HOM05D003952 ORTHO05D005083 6.1e-44 184.1 154 66.2
Duzib041G0651 Durio zibethinus HOM05D003952 ORTHO05D005083 3.6e-36 158.3 92 87.0
Psat7g010640 Pisum sativum HOM05D003952 ORTHO05D037363 8.0e-28 130.6 96 70.8
Psat7g010720 Pisum sativum HOM05D003952 ORTHO05D037363 8.0e-28 130.6 96 70.8
Psat0s4455g0040 Pisum sativum HOM05D003952 ORTHO05D037363 2.3e-27 129.0 91 74.7
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 1.1e-21 110.2 78 71.8
Nn3g20398 Nelumbo nucifera HOM05D003952 ORTHO05D005083 1.8e-19 102.8 83 66.3
Lsat_1_v5_gn_7_62680 Lactuca sativa HOM05D003952 ORTHO05D015589 3.7e-17 95.1 74 64.9
TPR.G25241 Trifolium pratense HOM05D003952 ORTHO05D048898 1.6e-15 89.7 55 74.5
Lsat_1_v5_gn_3_73081 Lactuca sativa HOM05D003952 ORTHO05D015589 2.0e-15 89.4 46 82.6
PGSC0003DMG400001110 Solanum tuberosum HOM05D003952 ORTHO05D005083 3.5e-15 88.6 81 51.9
Lsat_1_v5_gn_5_15721 Lactuca sativa HOM05D001610 ORTHO05D001585 8.0e-12 77.4 95 48.4


User provided reference genes

Program Settings