Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.22043 Avicennia marina HOM05D007607 ORTHO05D009603 3.8e-53 211.5 123 100.0
MSTRG.24562 Avicennia marina HOM05D007607 ORTHO05D009603 6.5e-21 104.4 122 62.3
Migut.N03053 Erythranthe guttata HOM05D007607 ORTHO05D009603 1.9e-20 102.8 124 56.5
SalBow6G6796 Salvia bowleyana HOM05D007607 ORTHO05D009603 4.2e-20 101.7 124 57.3
Dinv18311 Davidia involucrata HOM05D007607 ORTHO05D009603 9.1e-15 84.0 122 52.5
Ciclev10022842m.g Citrus clementina HOM05D007607 ORTHO05D009603 1.2e-14 83.6 125 49.6
QL10p057428 Quercus lobata HOM05D007607 ORTHO05D009603 1.5e-14 83.2 119 50.4
Duzib212G0637 Durio zibethinus HOM05D007607 ORTHO05D009603 2.0e-14 82.8 107 51.4
Actinidia28975 Actinidia chinensis HOM05D007607 ORTHO05D009603 2.6e-14 82.4 119 45.4
Cfa015274 Carpinus fangiana HOM05D007607 ORTHO05D009603 5.9e-14 81.3 122 42.6
Potri.013G128700 Populus trichocarpa HOM05D007607 ORTHO05D009603 7.7e-14 80.9 117 49.6
Manes.05G131900 Manihot esculenta HOM05D007607 ORTHO05D009603 1.3e-13 80.1 112 52.7
RhsimUnG0015300 Rhododendron simsii HOM05D007607 ORTHO05D009603 1.3e-13 80.1 126 49.2
QL10p057723 Quercus lobata HOM05D007607 ORTHO05D009603 2.2e-13 79.3 119 50.4
Rhsim02G0085800 Rhododendron simsii HOM05D007607 ORTHO05D009603 2.9e-13 79.0 126 49.2
Gohir.D10G121500 Gossypium hirsutum HOM05D007607 ORTHO05D009603 3.8e-13 78.6 125 48.8
Gorai.011G133600 Gossypium raimondii HOM05D007607 ORTHO05D009603 3.8e-13 78.6 125 48.8
Gohir.A10G145500 Gossypium hirsutum HOM05D007607 ORTHO05D009603 6.5e-13 77.8 125 48.0
unitig_22.g5705 Utricularia gibba HOM05D007607 ORTHO05D009603 6.5e-13 77.8 80 65.0
CANSAT56G1551 Cannabis sativa HOM05D007607 ORTHO05D009603 1.1e-12 77.0 76 63.2
FvH4_1g00500 Fragaria vesca HOM05D007607 ORTHO05D009603 1.4e-12 76.6 120 53.3
Lsat_1_v5_gn_8_9141 Lactuca sativa HOM05D007607 ORTHO05D009603 1.9e-12 76.3 98 54.1
CAN.G1237.5 Capsicum annuum HOM05D007607 ORTHO05D009603 2.5e-12 75.9 79 64.6
Haze_01353 Corylus avellana HOM05D007607 ORTHO05D009603 3.2e-12 75.5 121 43.8
CiPaw.01G169900 Carya illinoinensis HOM05D007607 ORTHO05D009603 4.2e-12 75.1 128 46.1
Peaxi162Scf00883g00099 Petunia axillaris HOM05D007607 ORTHO05D009603 5.5e-12 74.7 115 51.3
GSVIVG01038189001 Vitis vinifera HOM05D007607 ORTHO05D009603 5.5e-12 74.7 79 64.6
MD15G1147800 Malus domestica HOM05D007607 ORTHO05D009603 9.4e-12 73.9 84 64.3
CSS0042213 Camellia sinensis var. sinensis HOM05D007607 ORTHO05D009603 1.6e-11 73.2 112 50.0
Thecc.04G162800 Theobroma cacao HOM05D007607 ORTHO05D009603 1.6e-11 73.2 122 45.1
CSS0037895 Camellia sinensis var. sinensis HOM05D007607 ORTHO05D009603 2.1e-11 72.8 112 50.0
Eucgr.H00285 Eucalyptus grandis HOM05D007607 ORTHO05D009603 2.7e-11 72.4 108 54.6
Atru.chr4.1510 Acer truncatum HOM05D007607 ORTHO05D009603 6.1e-11 71.2 95 61.1
Nitab4.5_0000575g0080 Nicotiana tabacum HOM05D007607 ORTHO05D009603 6.1e-11 71.2 111 51.4
Sed0020904 Sechium edule HOM05D007607 ORTHO05D009603 6.1e-11 71.2 93 46.2
Cc03_g14540 Coffea canephora HOM05D007607 ORTHO05D009603 7.9e-11 70.9 78 67.9
ECA233G0487 Erigeron canadensis HOM05D007607 ORTHO05D009603 7.9e-11 70.9 113 46.0
MD02G1004100 Malus domestica HOM05D007607 ORTHO05D009603 7.9e-11 70.9 102 54.9
Solyc12g019550.2 Solanum lycopersicum HOM05D007607 ORTHO05D009603 1.0e-10 70.5 123 45.5
RcHm_v2.0_Chr2g0085131 Rosa chinensis HOM05D007607 ORTHO05D009603 1.4e-10 70.1 121 51.2
ClCG11G013470 Citrullus lanatus HOM05D007607 ORTHO05D009603 1.8e-10 69.7 81 56.8
PSO017G0391 Papaver somniferum HOM05D007607 ORTHO05D009603 1.8e-10 69.7 79 50.6
Lj4g0023803 Lotus japonicus HOM05D007607 ORTHO05D009603 2.3e-10 69.3 83 61.4
Nitab4.5_0008331g0020 Nicotiana tabacum HOM05D001883 ORTHO05D002184 2.3e-10 69.3 82 59.8
PSO675G5570 Papaver somniferum HOM05D007607 ORTHO05D009603 2.3e-10 69.3 76 51.3
Glyma.07G206400 Glycine max HOM05D007607 ORTHO05D009603 3.0e-10 68.9 95 55.8
Sopen12g009810 Solanum pennellii HOM05D007607 ORTHO05D009603 3.0e-10 68.9 87 52.9
arahy.Tifrunner.gnm1.ann1.RJI6AK Arachis hypogaea HOM05D007607 ORTHO05D009603 3.9e-10 68.6 97 56.7
Hund12359 Selenicereus undatus HOM05D007607 ORTHO05D009603 3.9e-10 68.6 116 49.1
Atru.chr4.1481 Acer truncatum HOM05D007607 ORTHO05D009603 5.1e-10 68.2 95 60.0
EL10Ac3g06110 Beta vulgaris HOM05D007607 ORTHO05D009603 5.1e-10 68.2 122 43.4
MELO3C011848.2 Cucumis melo HOM05D007607 ORTHO05D009603 6.7e-10 67.8 108 48.1
BcaB07g32146 Brassica carinata HOM05D007607 ORTHO05D009603 8.8e-10 67.4 123 48.0
Carub.0001s2092 Capsella rubella HOM05D007607 ORTHO05D009603 1.1e-09 67.0 121 45.5
CiPaw.02G100000 Carya illinoinensis HOM05D007607 ORTHO05D009603 1.1e-09 67.0 124 41.9
TWI15G0968 Tripterygium wilfordii HOM05D007607 ORTHO05D009603 1.1e-09 67.0 123 52.0
Cpa.g.sc343.4 Carica papaya HOM05D007607 ORTHO05D009603 1.5e-09 66.6 103 53.4
DCAR_005451 Daucus carota HOM05D007607 ORTHO05D009603 1.5e-09 66.6 103 49.5
TAR362G0213 Trochodendron aralioides HOM05D007607 ORTHO05D009603 1.5e-09 66.6 82 58.5
PGSC0003DMG400029159 Solanum tuberosum HOM05D007607 ORTHO05D009603 2.0e-09 66.2 78 59.0
CsaV3_5G030090 Cucumis sativus L. HOM05D007607 ORTHO05D009603 2.6e-09 65.9 80 56.2
PGR142G0203 Punica granatum HOM05D007607 ORTHO05D009603 2.6e-09 65.9 82 58.5
BraA06t24849Z Brassica rapa HOM05D007607 ORTHO05D009603 3.3e-09 65.5 121 47.9
Lalb_Chr16g0384371 Lupinus albus HOM05D007607 ORTHO05D009603 3.3e-09 65.5 95 52.6
Prupe.7G267000 Prunus persica HOM05D007607 ORTHO05D009603 3.3e-09 65.5 81 59.3
HanXRQChr02g0059081 Helianthus annuus HOM05D007607 ORTHO05D009603 4.4e-09 65.1 100 59.0
THA.LOC104813690 Tarenaya hassleriana HOM05D007607 ORTHO05D009603 5.7e-09 64.7 117 45.3
Ca_18631_v3 Cicer arietinum L. HOM05D004461 ORTHO05D005543 7.4e-09 64.3 80 48.8
Sp1g19030 Schrenkiella parvula HOM05D007607 ORTHO05D009603 1.7e-08 63.2 118 50.0
A06p17530 Brassica napus HOM05D007607 ORTHO05D009603 2.2e-08 62.8 120 46.7
BcaC06g34863 Brassica carinata HOM05D007607 ORTHO05D009603 2.8e-08 62.4 116 46.6
BolC7t42778H Brassica oleracea HOM05D007607 ORTHO05D009603 2.8e-08 62.4 116 46.6
TPR.G23536 Trifolium pratense HOM05D007607 ORTHO05D009603 8.2e-08 60.8 86 59.3
BcaC05g26059 Brassica carinata HOM05D007607 ORTHO05D009603 1.1e-07 60.5 123 46.3
BolC5t30734H Brassica oleracea HOM05D007607 ORTHO05D009603 1.1e-07 60.5 123 46.3
AUR62002416 Chenopodium quinoa HOM05D007607 ORTHO05D009603 1.1e-07 60.5 73 47.9
VMungo0251G2348 Vigna mungo HOM05D007607 ORTHO05D009603 1.1e-07 60.5 94 50.0
CARHR021860 Cardamine hirsuta HOM05D007607 ORTHO05D009603 1.4e-07 60.1 121 45.5
Sc13g0006620 Simmondsia chinensis HOM05D007607 ORTHO05D009603 1.4e-07 60.1 83 44.6
AT1G21500 Arabidopsis thaliana HOM05D007607 ORTHO05D009603 1.8e-07 59.7 121 45.5
Glyma.02G138600 Glycine max HOM05D007607 ORTHO05D009603 2.4e-07 59.3 100 51.0
Zm00001eb318610 Zea mays HOM05D007607 ORTHO05D009603 2.4e-07 59.3 38 76.3
AL1G34640 Arabidopsis lyrata HOM05D007607 ORTHO05D009603 3.1e-07 58.9 121 45.5
A07p15130 Brassica napus HOM05D007607 ORTHO05D009603 3.1e-07 58.9 116 43.1
Thhalv10009074m.g Eutrema salsugineum HOM05D007607 ORTHO05D009603 3.1e-07 58.9 119 45.4
C07p22190 Brassica napus HOM05D007607 ORTHO05D009603 4.1e-07 58.5 116 45.7
BcaB03g14267 Brassica carinata HOM05D007607 ORTHO05D009603 7.0e-07 57.8 116 44.8
C05p20400 Brassica napus HOM05D007607 ORTHO05D009603 7.0e-07 57.8 119 47.9
AUR62023773 Chenopodium quinoa HOM05D007607 ORTHO05D009603 7.0e-07 57.8 73 60.3
Os09g0517000 Oryza sativa ssp. japonica HOM05D007607 ORTHO05D009603 1.2e-06 57.0 38 73.7
Psat7g119360 Pisum sativum HOM05D007607 ORTHO05D009603 1.2e-06 57.0 92 54.3
MBI10_g16327_MAGBIO Magnolia biondii HOM05D007607 ORTHO05D009603 1.5e-06 56.6 80 51.2
Aa31LG7G5390 Aethionema arabicum HOM05D007607 ORTHO05D009603 2.0e-06 56.2 114 47.4
Aqoxy2G03795 Aquilegia oxysepala HOM05D007607 ORTHO05D009603 2.0e-06 56.2 77 58.4
Medtr4g087540 Medicago truncatula HOM05D007607 ORTHO05D009603 3.4e-06 55.5 86 57.0


User provided reference genes

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