Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.21921 Avicennia marina HOM05D005408 ORTHO05D006790 0.0e+00 1896.3 984 100.0
SalBow3G0714 Salvia bowleyana HOM05D005408 ORTHO05D006790 0.0e+00 1113.6 958 65.6
Migut.N00286 Erythranthe guttata HOM05D005408 ORTHO05D006790 3.0e-310 1068.5 962 61.9
SGA_v2.0_scaffold43G16217 Striga asiatica HOM05D005408 ORTHO05D006790 7.6e-298 1027.3 959 60.9
Oeu002940.1 Olea europaea HOM05D005408 ORTHO05D006790 1.1e-293 1013.4 966 58.8
Oeu005084.1 Olea europaea HOM05D005408 ORTHO05D006790 9.1e-275 950.7 964 57.5
Dinv27073 Davidia involucrata HOM05D005408 ORTHO05D006790 6.3e-268 927.9 998 55.4
Actinidia20821 Actinidia chinensis HOM05D005408 ORTHO05D006790 2.9e-265 919.1 1008 53.8
Dinv29839 Davidia involucrata HOM05D005408 ORTHO05D006790 2.2e-260 902.9 964 54.5
Prupe.1G042300 Prunus persica HOM05D005408 ORTHO05D006790 4.0e-254 882.1 1001 51.7
CSS0047984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 8.8e-254 880.9 992 52.8
MD16G1222000 Malus domestica HOM05D005408 ORTHO05D006790 1.3e-252 877.1 993 51.2
GSVIVG01027854001 Vitis vinifera HOM05D005408 ORTHO05D006790 1.6e-250 870.2 972 52.7
Peaxi162Scf00392g00730 Petunia axillaris HOM05D005408 ORTHO05D006790 3.5e-250 869.0 1019 50.2
MD13G1216600 Malus domestica HOM05D005408 ORTHO05D006790 3.2e-248 862.4 993 50.7
QL06p019224 Quercus lobata HOM05D005408 ORTHO05D006790 1.4e-246 857.1 980 51.9
TAR633G1608 Trochodendron aralioides HOM05D005408 ORTHO05D006790 1.4e-246 857.1 1010 50.5
Sopen09g033240 Solanum pennellii HOM05D005408 ORTHO05D006790 8.8e-246 854.4 1039 50.5
CSS0016984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 9.8e-245 850.9 984 51.8
PGSC0003DMG400017212 Solanum tuberosum HOM05D005408 ORTHO05D006790 1.3e-244 850.5 1037 50.2
Lj3A679T38 Lonicera japonica HOM05D005408 ORTHO05D006790 2.2e-244 849.7 1000 52.3
Thecc.04G259100 Theobroma cacao HOM05D005408 ORTHO05D006790 2.2e-244 849.7 987 51.3
CAN.G220.39 Capsicum annuum HOM05D005408 ORTHO05D006790 8.3e-244 847.8 1020 50.7
Haze_11418 Corylus avellana HOM05D005408 ORTHO05D006790 2.4e-243 846.3 1001 50.3
Solyc09g090340.3 Solanum lycopersicum HOM05D005408 ORTHO05D006790 2.4e-243 846.3 1033 50.5
Duzib151G0888 Durio zibethinus HOM05D005408 ORTHO05D006790 7.0e-243 844.7 982 51.3
Cc03_g05790 Coffea canephora HOM05D005408 ORTHO05D006790 1.6e-242 843.6 1041 51.6
CiPaw.02G109300 Carya illinoinensis HOM05D005408 ORTHO05D006790 2.7e-242 842.8 985 51.0
DCAR_024278 Daucus carota HOM05D005408 ORTHO05D006790 3.5e-242 842.4 995 51.0
Nitab4.5_0000044g0530 Nicotiana tabacum HOM05D005408 ORTHO05D006790 1.5e-240 837.0 1043 49.6
Cfa014743 Carpinus fangiana HOM05D005408 ORTHO05D006790 1.9e-240 836.6 1002 50.0
Lj3A684T25 Lonicera japonica HOM05D005408 ORTHO05D006790 1.9e-240 836.6 1000 51.8
Nitab4.5_0000596g0060 Nicotiana tabacum HOM05D005408 ORTHO05D006790 1.9e-240 836.6 1100 47.8
Rhsim02G0041600 Rhododendron simsii HOM05D005408 ORTHO05D006790 5.6e-240 835.1 1146 46.7
Ciclev10004264m.g Citrus clementina HOM05D005408 ORTHO05D006790 9.5e-240 834.3 973 49.6
FAN12G0827 Fragaria x ananassa HOM05D005408 ORTHO05D006790 1.3e-236 823.9 969 51.9
COL.COLO4_15917 Corchorus olitorius HOM05D005408 ORTHO05D006790 1.7e-236 823.5 930 51.6
Atru.chr4.2004 Acer truncatum HOM05D005408 ORTHO05D006790 2.2e-236 823.2 970 50.5
Nn1g02867 Nelumbo nucifera HOM05D005408 ORTHO05D006790 2.9e-236 822.8 1032 49.2
Migut.G00502 Erythranthe guttata HOM05D005408 ORTHO05D006790 6.4e-236 821.6 959 51.8
MSTRG.4147 Avicennia marina HOM05D005408 ORTHO05D006790 1.8e-235 820.1 954 51.7
TAR362G0279 Trochodendron aralioides HOM05D005408 ORTHO05D006790 1.8e-235 820.1 1002 50.1
EL10Ac3g04981 Beta vulgaris HOM05D005408 ORTHO05D006790 2.4e-235 819.7 994 48.8
vmacro15459 Vaccinium macrocarpon HOM05D005408 ORTHO05D006790 3.2e-235 819.3 1099 47.4
Duzib212G0761 Durio zibethinus HOM05D005408 ORTHO05D006790 7.0e-235 818.1 979 50.3
FvH4_4g04020 Fragaria vesca HOM05D005408 ORTHO05D006790 2.3e-233 813.1 967 51.4
Manes.15G043300 Manihot esculenta HOM05D005408 ORTHO05D006790 3.0e-233 812.8 992 49.7
Hma1.2p1_0112F.1_g054305 Hydrangea macrophylla HOM05D005408 ORTHO05D006790 8.6e-233 811.2 690 60.6
Potri.008G169200 Populus trichocarpa HOM05D005408 ORTHO05D006790 1.9e-232 810.1 984 50.4
RcHm_v2.0_Chr4g0394291 Rosa chinensis HOM05D005408 ORTHO05D006790 3.3e-232 809.3 974 50.1
SGA_v2.0_scaffold101G29731 Striga asiatica HOM05D005408 ORTHO05D006790 1.2e-231 807.4 966 51.2
Manes.15G043200 Manihot esculenta HOM05D005408 ORTHO05D006790 4.7e-231 805.4 984 49.9
Potri.010G069200 Populus trichocarpa HOM05D005408 ORTHO05D006790 1.4e-230 803.9 983 50.3
FAN17G2537 Fragaria x ananassa HOM05D005408 ORTHO05D006790 1.8e-230 803.5 971 50.1
ClCG05G004200 Citrullus lanatus HOM05D005408 ORTHO05D006790 1.2e-229 800.8 986 49.3
Gohir.A02G040500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 5.8e-229 798.5 997 49.3
MELO3C006406.2 Cucumis melo HOM05D005408 ORTHO05D006790 9.8e-229 797.7 996 49.5
TWI09G0385 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 2.2e-228 796.6 962 49.7
TWI53G1583 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 1.4e-227 793.9 996 48.0
Sc19g0003230 Simmondsia chinensis HOM05D005408 ORTHO05D006790 1.2e-226 790.8 976 47.7
Gohir.D02G046500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 5.0e-225 785.4 981 49.6
CsaV3_3G011930 Cucumis sativus L. HOM05D005408 ORTHO05D006790 1.5e-224 783.9 987 48.5
AUR62015544 Chenopodium quinoa HOM05D005408 ORTHO05D006790 4.3e-224 782.3 999 48.6
CANSAT54G2691 Cannabis sativa HOM05D005408 ORTHO05D006790 2.8e-223 779.6 980 48.5
Eucgr.H03018 Eucalyptus grandis HOM05D005408 ORTHO05D006790 6.2e-223 778.5 995 47.8
Cpa.g.sc44.32 Carica papaya HOM05D005408 ORTHO05D006790 1.8e-222 776.9 992 48.1
Aqoxy5G00183 Aquilegia oxysepala HOM05D005408 ORTHO05D006790 5.2e-222 775.4 1009 47.8
Hund03055 Selenicereus undatus HOM05D005408 ORTHO05D006790 5.2e-222 775.4 993 46.7
FAN22G0039 Fragaria x ananassa HOM05D005408 ORTHO05D006790 6.8e-222 775.0 1012 47.8
Sabra10G0037900 Salix brachista HOM05D005408 ORTHO05D006790 1.3e-220 770.8 981 48.8
Aa31LG9G3050 Aethionema arabicum HOM05D005408 ORTHO05D006790 3.7e-220 769.2 972 46.9
AUR62002164 Chenopodium quinoa HOM05D005408 ORTHO05D006790 1.4e-219 767.3 975 48.6
HanXRQChr11g0330791 Helianthus annuus HOM05D005408 ORTHO05D006790 1.2e-218 764.2 943 49.4
Sabra08G0129000 Salix brachista HOM05D005408 ORTHO05D006790 4.6e-218 762.3 996 48.2
CARHR220500 Cardamine hirsuta HOM05D005408 ORTHO05D006790 9.5e-216 754.6 979 46.2
CiPaw.01G181400 Carya illinoinensis HOM05D005408 ORTHO05D006790 4.7e-215 752.3 987 46.1
Sp7g12340 Schrenkiella parvula HOM05D005408 ORTHO05D006790 1.1e-214 751.1 988 46.7
MBI07_g31083_MAGBIO Magnolia biondii HOM05D005408 ORTHO05D006790 1.2e-213 747.7 1025 46.3
Gorai.005G051300 Gossypium raimondii HOM05D005408 ORTHO05D006790 1.3e-212 744.2 925 49.1
Sed0026902 Sechium edule HOM05D005408 ORTHO05D006790 2.9e-212 743.0 979 46.6
ECA248G0134 Erigeron canadensis HOM05D005408 ORTHO05D006790 1.4e-211 740.7 967 47.7
arahy.Tifrunner.gnm1.ann1.HQEG75 Arachis hypogaea HOM05D005408 ORTHO05D006790 3.2e-211 739.6 673 57.1
Lalb_Chr03g0037341 Lupinus albus HOM05D005408 ORTHO05D006790 4.1e-211 739.2 998 46.5
THA.LOC104804761 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 1.6e-210 737.3 980 46.6
PGR004G2334 Punica granatum HOM05D005408 ORTHO05D006790 2.1e-210 736.9 980 46.4
Glyma.02G003800 Glycine max HOM05D005408 ORTHO05D006790 7.8e-210 734.9 683 58.0
Lj6g0021221 Lotus japonicus HOM05D005408 ORTHO05D006790 7.8e-210 734.9 669 59.6
AL7G41950 Arabidopsis lyrata HOM05D005408 ORTHO05D006790 8.6e-209 731.5 919 47.1
AT4G14310 Arabidopsis thaliana HOM05D005408 ORTHO05D006790 3.3e-208 729.6 980 46.3
BcaNung06103 Brassica carinata HOM05D005408 ORTHO05D006790 6.2e-207 725.3 973 45.3
Carub.0007s2798 Capsella rubella HOM05D005408 ORTHO05D006790 1.4e-206 724.2 981 45.7
Phvul.007G275400 Phaseolus vulgaris HOM05D005408 ORTHO05D006790 1.4e-206 724.2 654 58.9
arahy.Tifrunner.gnm1.ann1.NA4LRU Arachis hypogaea HOM05D005408 ORTHO05D006790 3.1e-206 723.0 936 45.5
Glyma.10G004700 Glycine max HOM05D005408 ORTHO05D006790 9.9e-205 718.0 748 53.6
PSO832G1937 Papaver somniferum HOM05D005408 ORTHO05D006790 1.7e-204 717.2 984 45.6
C03p76860 Brassica napus HOM05D005408 ORTHO05D006790 4.9e-204 715.7 970 45.2
Lsat_1_v5_gn_1_74661 Lactuca sativa HOM05D005408 ORTHO05D006790 8.4e-204 714.9 1001 46.7
THA.LOC104822240 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 1.9e-203 713.8 996 44.8
VMungo0720G1073 Vigna mungo HOM05D005408 ORTHO05D006790 4.2e-203 712.6 747 52.6
Thhalv10024359m.g Eutrema salsugineum HOM05D005408 ORTHO05D006790 1.2e-202 711.1 977 45.0
BcaC01g00205 Brassica carinata HOM05D005408 ORTHO05D006790 1.6e-202 710.7 970 45.1
Medtr1g041685 Medicago truncatula HOM05D005408 ORTHO05D006790 4.6e-202 709.1 674 55.8
PSO210G0343 Papaver somniferum HOM05D005408 ORTHO05D006790 7.8e-202 708.4 997 44.6
A08p24350 Brassica napus HOM05D005408 ORTHO05D006790 5.1e-201 705.7 970 45.6
BolC3t19941H Brassica oleracea HOM05D005408 ORTHO05D006790 9.6e-200 701.4 989 44.3
Ca_03010_v3 Cicer arietinum L. HOM05D005408 ORTHO05D006790 1.8e-198 697.2 723 55.0
Psat6g104520 Pisum sativum HOM05D005408 ORTHO05D006790 3.1e-198 696.4 768 52.0
TPR.G25189 Trifolium pratense HOM05D005408 ORTHO05D006790 3.4e-197 693.0 743 53.0
BraA08t34390Z Brassica rapa HOM05D005408 ORTHO05D006790 5.4e-195 685.6 995 44.6
HanXRQChr01g0023201 Helianthus annuus HOM05D005408 ORTHO05D006790 1.6e-194 684.1 981 45.6
ATR0736G089 Amborella trichopoda HOM05D005408 ORTHO05D006790 1.3e-177 627.9 725 49.4
Zm00001eb258510 Zea mays HOM05D005408 ORTHO05D006790 2.5e-176 623.6 679 49.9
Zm00001eb191660 Zea mays HOM05D005408 ORTHO05D006790 3.3e-176 623.2 675 50.1
CDE07G1006 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 1.8e-161 574.3 1008 40.5
CDE04G2551 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 8.8e-161 572.0 1044 39.4
unitig_736.g22443 Utricularia gibba HOM05D005408 ORTHO05D006790 2.0e-160 570.9 887 43.5
SEGI_14734 Sequoiadendron giganteum HOM05D005408 ORTHO05D006790 2.1e-146 524.2 692 44.2
HPP92_008326 Vanilla planifolia HOM05D005408 ORTHO05D006790 1.3e-135 488.4 986 37.0
Ah.13g072600 Amaranthus hybridus HOM05D005408 ORTHO05D006790 1.0e-124 452.2 743 42.0
TPR.G25191 Trifolium pratense HOM05D005408 ORTHO05D006790 4.9e-119 433.3 672 40.9
Mapoly0063s0094 Marchantia polymorpha HOM05D005408 ORTHO05D006790 1.9e-99 368.2 530 37.9
Os02g0809900 Oryza sativa ssp. japonica HOM05D005408 ORTHO05D006790 1.9e-94 351.7 307 55.0
Pp3c16_10130 Physcomitrium patens HOM05D005408 ORTHO05D006790 4.1e-94 350.5 491 38.5
Pp3c25_7300 Physcomitrium patens HOM05D005408 ORTHO05D006790 3.9e-92 344.0 775 32.3
AagrBONN_evm.TU.Sc2ySwM_228.3605 Anthoceros agrestis HOM05D005408 ORTHO05D006790 4.6e-85 320.5 450 38.2
SalBow8G3468 Salvia bowleyana HOM05D005408 ORTHO05D006790 3.8e-47 194.5 253 45.1
SalBow7G4774 Salvia bowleyana HOM05D005408 ORTHO05D006790 3.6e-45 188.0 115 80.0
CBR_g30942 Chara braunii HOM05D005408 ORTHO05D006790 2.5e-30 138.7 374 28.9
Rhsim02G0041700 Rhododendron simsii HOM05D005408 ORTHO05D006790 2.2e-26 125.6 190 42.6
Hund11908 Selenicereus undatus HOM05D005408 ORTHO05D006790 1.5e-22 112.8 146 47.3
CiPaw.06G041800 Carya illinoinensis HOM05D005408 ORTHO05D006790 1.8e-17 95.9 359 33.7
BolC4t25724H Brassica oleracea HOM05D005408 ORTHO05D006790 1.0e-15 90.1 125 46.4
C04p41430 Brassica napus HOM05D005408 ORTHO05D006790 1.3e-15 89.7 125 46.4
A04p07780 Brassica napus HOM05D005408 ORTHO05D006790 6.8e-12 77.4 80 51.2
BolC4t25725H Brassica oleracea HOM05D005408 ORTHO05D006790 8.3e-10 70.5 107 42.1
C04p41440 Brassica napus HOM05D005408 ORTHO05D006790 5.4e-09 67.8 107 42.1
SGA_v2.0_scaffold57G20265 Striga asiatica HOM05D005408 ORTHO05D006790 1.6e-08 66.2 82 51.2
unitig_899.g14890 Utricularia gibba HOM05D005408 ORTHO05D416926 2.9e-07 62.0 107 47.7
BcaC02g09333 Brassica carinata HOM05D005408 ORTHO05D006790 2.5e-06 58.9 61 57.4


User provided reference genes

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