Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.21911 Avicennia marina HOM05D005134 ORTHO05D006548 7.3e-144 513.8 252 100.0
SalBow3G1367 Salvia bowleyana HOM05D005134 ORTHO05D006548 1.5e-117 426.4 251 82.9
Migut.N00267 Erythranthe guttata HOM05D005134 ORTHO05D006548 6.4e-116 421.0 251 84.1
Nitab4.5_0011884g0010 Nicotiana tabacum HOM05D005134 ORTHO05D006548 4.4e-109 398.3 251 77.3
Actinidia04451 Actinidia chinensis HOM05D005134 ORTHO05D006548 1.7e-108 396.4 250 79.6
Hma1.2p1_1006F.1_g247010 Hydrangea macrophylla HOM05D005134 ORTHO05D006548 8.4e-108 394.0 252 77.8
Peaxi162Scf00409g00421 Petunia axillaris HOM05D005134 ORTHO05D006548 1.9e-107 392.9 232 82.3
Nitab4.5_0000044g0220 Nicotiana tabacum HOM05D005134 ORTHO05D006548 7.1e-107 391.0 251 76.5
CAN.G793.56 Capsicum annuum HOM05D005134 ORTHO05D006548 6.6e-105 384.4 249 77.1
Rhsim04G0183700 Rhododendron simsii HOM05D005134 ORTHO05D006548 1.1e-104 383.6 249 77.1
Lj3A700T11 Lonicera japonica HOM05D005134 ORTHO05D006548 1.9e-104 382.9 251 74.1
Oeu028977.1 Olea europaea HOM05D005134 ORTHO05D006548 4.3e-104 381.7 238 78.2
Sopen09g032960 Solanum pennellii HOM05D005134 ORTHO05D006548 7.3e-104 380.9 236 79.2
Cc03_g05430 Coffea canephora HOM05D005134 ORTHO05D006548 2.1e-103 379.4 250 74.0
Nn1g02742 Nelumbo nucifera HOM05D005134 ORTHO05D006548 2.1e-103 379.4 252 76.6
MBI18_g13184_MAGBIO Magnolia biondii HOM05D005134 ORTHO05D006548 2.4e-102 375.9 221 81.9
PGSC0003DMG400017174 Solanum tuberosum HOM05D005134 ORTHO05D006548 5.3e-102 374.8 251 75.7
TWI63G1834 Tripterygium wilfordii HOM05D005134 ORTHO05D006548 4.5e-101 371.7 235 76.2
TAR365G0228 Trochodendron aralioides HOM05D005134 ORTHO05D006548 5.8e-101 371.3 250 74.0
Sc09g0004160 Simmondsia chinensis HOM05D005134 ORTHO05D006548 7.6e-101 370.9 229 78.2
Aqoxy5G00231 Aquilegia oxysepala HOM05D005134 ORTHO05D006548 2.9e-100 369.0 225 77.3
Potri.013G045800 Populus trichocarpa HOM05D005134 ORTHO05D006548 4.2e-99 365.2 216 81.0
TAR636G3303 Trochodendron aralioides HOM05D005134 ORTHO05D006548 7.1e-99 364.4 251 71.3
Gorai.013G187000 Gossypium raimondii HOM05D005134 ORTHO05D006548 1.2e-98 363.6 216 79.6
Gohir.A13G168200 Gossypium hirsutum HOM05D005134 ORTHO05D006548 1.6e-98 363.2 216 80.1
Manes.09G148800 Manihot esculenta HOM05D005134 ORTHO05D006548 2.1e-98 362.8 252 71.8
Sabra13G0042100 Salix brachista HOM05D005134 ORTHO05D006548 2.1e-98 362.8 219 78.5
RcHm_v2.0_Chr3g0449951 Rosa chinensis HOM05D005134 ORTHO05D006548 4.6e-98 361.7 226 75.7
Gohir.D13G173500 Gossypium hirsutum HOM05D005134 ORTHO05D006548 1.0e-97 360.5 216 78.7
QL03p031652 Quercus lobata HOM05D005134 ORTHO05D006548 1.3e-97 360.1 216 79.2
QL09p031144 Quercus lobata HOM05D005134 ORTHO05D006548 1.3e-97 360.1 216 79.2
FAN05G3609 Fragaria x ananassa HOM05D005134 ORTHO05D006548 3.0e-97 359.0 226 75.2
Thecc.05G272900 Theobroma cacao HOM05D005134 ORTHO05D006548 3.0e-97 359.0 214 79.9
FvH4_6g02180 Fragaria vesca HOM05D005134 ORTHO05D006548 3.9e-97 358.6 226 75.2
Cpa.g.sc162.33 Carica papaya HOM05D005134 ORTHO05D006548 5.1e-97 358.2 240 71.7
THA.LOC104807079 Tarenaya hassleriana HOM05D005134 ORTHO05D006548 5.1e-97 358.2 240 71.7
CANSAT54G0719 Cannabis sativa HOM05D005134 ORTHO05D006548 1.1e-96 357.1 249 70.7
CDE02G0996 Ceratophyllum demersum HOM05D005134 ORTHO05D006548 1.5e-96 356.7 225 74.2
Eucgr.H04250 Eucalyptus grandis HOM05D005134 ORTHO05D006548 1.5e-96 356.7 232 74.6
MD12G1246100 Malus domestica HOM05D005134 ORTHO05D006548 1.9e-96 356.3 224 77.2
Aa31LG2G12350 Aethionema arabicum HOM05D005134 ORTHO05D006548 3.3e-96 355.5 243 70.0
HanXRQChr03g0091791 Helianthus annuus HOM05D005134 ORTHO05D006548 3.3e-96 355.5 228 75.0
unitig_0.g910 Utricularia gibba HOM05D005134 ORTHO05D006548 3.3e-96 355.5 217 77.9
MELO3C004420.2 Cucumis melo HOM05D005134 ORTHO05D006548 5.6e-96 354.8 225 76.0
Eucgr.H04279 Eucalyptus grandis HOM05D005134 ORTHO05D006548 5.6e-96 354.8 230 74.3
Solyc09g090050.4 Solanum lycopersicum HOM05D005134 ORTHO05D006548 5.6e-96 354.8 199 81.9
CsaV3_2G003750 Cucumis sativus L. HOM05D005134 ORTHO05D006548 9.6e-96 354.0 225 75.6
Lj5g0005697 Lotus japonicus HOM05D005134 ORTHO05D006548 9.6e-96 354.0 226 74.3
Dinv14615 Davidia involucrata HOM05D005134 ORTHO05D006548 1.3e-95 353.6 228 75.4
FAN14G0587 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.3e-95 353.6 226 74.3
Glyma.10G166800 Glycine max HOM05D005134 ORTHO05D006548 1.3e-95 353.6 235 70.6
PSO170G6910 Papaver somniferum HOM05D005134 ORTHO05D006548 1.3e-95 353.6 239 71.1
EL10Ac3g05020 Beta vulgaris HOM05D005134 ORTHO05D006548 3.7e-95 352.1 246 70.3
AUR62002121 Chenopodium quinoa HOM05D005134 ORTHO05D006548 4.8e-95 351.7 246 70.3
Duzib177G0085 Durio zibethinus HOM05D005134 ORTHO05D006548 4.8e-95 351.7 216 77.8
ATR0730G220 Amborella trichopoda HOM05D005134 ORTHO05D006548 8.1e-95 350.9 251 70.5
Prupe.6G348800 Prunus persica HOM05D005134 ORTHO05D006548 8.1e-95 350.9 214 78.0
VMungo0720G0573 Vigna mungo HOM05D005134 ORTHO05D006548 8.1e-95 350.9 231 70.6
PGR004G2085 Punica granatum HOM05D005134 ORTHO05D006548 1.1e-94 350.5 217 77.0
ECA240G2747 Erigeron canadensis HOM05D005134 ORTHO05D006548 1.4e-94 350.1 225 74.7
CiPaw.08G117800 Carya illinoinensis HOM05D005134 ORTHO05D006548 1.8e-94 349.7 243 71.2
FAN05G5817 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.8e-94 349.7 226 73.5
Phvul.L001688 Phaseolus vulgaris HOM05D005134 ORTHO05D006548 1.8e-94 349.7 231 70.1
AUR62028240 Chenopodium quinoa HOM05D005134 ORTHO05D006548 2.4e-94 349.4 244 70.5
Lsat_1_v5_gn_3_118860 Lactuca sativa HOM05D005134 ORTHO05D006548 3.1e-94 349.0 250 69.2
TPR.G32267 Trifolium pratense HOM05D005134 ORTHO05D006548 3.1e-94 349.0 246 68.3
HPP92_015212 Vanilla planifolia HOM05D005134 ORTHO05D006548 1.5e-93 346.7 218 76.6
Aqoxy2G03635 Aquilegia oxysepala HOM05D005134 ORTHO05D006548 2.6e-93 345.9 218 76.1
Potri.019G017900 Populus trichocarpa HOM05D005134 ORTHO05D006548 2.6e-93 345.9 240 71.2
Medtr1g079925 Medicago truncatula HOM05D005134 ORTHO05D006548 3.4e-93 345.5 242 68.6
Ciclev10001967m.g Citrus clementina HOM05D005134 ORTHO05D006548 4.5e-93 345.1 244 68.0
Sed0011924 Sechium edule HOM05D005134 ORTHO05D006548 4.5e-93 345.1 216 76.9
GSVIVG01036192001 Vitis vinifera HOM05D005134 ORTHO05D006548 9.9e-93 344.0 226 72.6
Ah.04g155980 Amaranthus hybridus HOM05D005134 ORTHO05D006548 1.3e-92 343.6 242 71.1
GSVIVG01027798001 Vitis vinifera HOM05D005134 ORTHO05D006548 1.7e-92 343.2 211 75.4
CSS0005455 Camellia sinensis var. sinensis HOM05D005134 ORTHO05D006548 2.9e-92 342.4 229 72.1
Sed0016660 Sechium edule HOM05D005134 ORTHO05D006548 2.9e-92 342.4 224 75.4
Lalb_Chr02g0149171 Lupinus albus HOM05D005134 ORTHO05D006548 3.2e-91 339.0 226 71.2
Glyma.20G222300 Glycine max HOM05D005134 ORTHO05D006548 4.2e-91 338.6 235 68.9
PSO173G0035 Papaver somniferum HOM05D005134 ORTHO05D006548 4.2e-91 338.6 247 68.4
ClCG02G016990 Citrullus lanatus HOM05D005134 ORTHO05D006548 5.5e-91 338.2 244 70.9
SpUn0001_1010 Schrenkiella parvula HOM05D005134 ORTHO05D006548 9.3e-91 337.4 236 68.6
CARHR110960 Cardamine hirsuta HOM05D005134 ORTHO05D006548 1.2e-90 337.0 218 72.0
BcaB04g20137 Brassica carinata HOM05D005134 ORTHO05D006548 2.1e-90 336.3 212 74.1
Thhalv10027851m.g Eutrema salsugineum HOM05D005134 ORTHO05D006548 2.1e-90 336.3 222 71.2
AL3G53380 Arabidopsis lyrata HOM05D005134 ORTHO05D006548 4.6e-90 335.1 222 70.3
arahy.Tifrunner.gnm1.ann1.JQR6X4 Arachis hypogaea HOM05D005134 ORTHO05D006548 6.0e-90 334.7 245 66.5
arahy.Tifrunner.gnm1.ann1.MCCA8X Arachis hypogaea HOM05D005134 ORTHO05D006548 1.0e-89 334.0 245 66.1
BcaC09g49624 Brassica carinata HOM05D005134 ORTHO05D006548 1.0e-89 334.0 211 73.9
Carub.0003s3480 Capsella rubella HOM05D005134 ORTHO05D006548 1.3e-89 333.6 230 67.8
Haze_04438 Corylus avellana HOM05D005134 ORTHO05D006548 1.3e-89 333.6 248 67.7
Atru.chr6.1561 Acer truncatum HOM05D005134 ORTHO05D006548 1.8e-89 333.2 221 72.9
COL.COLO4_15462 Corchorus olitorius HOM05D005134 ORTHO05D006548 1.8e-89 333.2 212 75.9
C01p34370 Brassica napus HOM05D005134 ORTHO05D006548 2.3e-89 332.8 211 73.5
BolC1t03407H Brassica oleracea HOM05D005134 ORTHO05D006548 2.3e-89 332.8 211 73.5
Manes.08G138000 Manihot esculenta HOM05D005134 ORTHO05D006548 3.0e-89 332.4 229 72.5
Hund03036 Selenicereus undatus HOM05D005134 ORTHO05D006548 1.1e-88 330.5 274 60.9
SHI23170 Sapria himalayana HOM05D005134 ORTHO05D006548 5.6e-88 328.2 231 69.7
Zm00001eb210280 Zea mays HOM05D005134 ORTHO05D006548 9.6e-88 327.4 229 69.4
HPP92_025481 Vanilla planifolia HOM05D005134 ORTHO05D006548 4.8e-87 325.1 214 71.5
vmacro08495 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 8.2e-87 324.3 393 48.1
FAN02G2775 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.8e-86 323.2 293 57.3
SEGI_05528 Sequoiadendron giganteum HOM05D005134 ORTHO05D006548 1.8e-86 323.2 223 67.7
AT2G20410 Arabidopsis thaliana HOM05D005134 ORTHO05D006548 3.1e-86 322.4 232 65.9
vmacro02444 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 1.6e-82 310.1 224 66.5
EL10Ac4g09067 Beta vulgaris HOM05D005134 ORTHO05D006548 3.0e-81 305.8 224 66.5
Actinidia34743 Actinidia chinensis HOM05D005134 ORTHO05D006548 1.1e-80 303.9 212 69.3
Hund06912 Selenicereus undatus HOM05D005134 ORTHO05D006548 3.7e-79 298.9 237 63.7
GSVIVG01027796001 Vitis vinifera HOM05D005134 ORTHO05D006548 1.5e-77 293.5 207 69.1
Eucgr.H04252 Eucalyptus grandis HOM05D005134 ORTHO05D006548 5.9e-77 291.6 224 67.4
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 3.0e-73 279.3 206 67.0
FAN09G4497 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.7e-71 273.5 213 63.4
Ca_10010_v3 Cicer arietinum L. HOM05D005134 ORTHO05D006548 2.2e-71 273.1 190 67.4
Mapoly0025s0138 Marchantia polymorpha HOM05D005134 ORTHO05D006548 6.3e-71 271.6 213 59.6
MD04G1229000 Malus domestica HOM05D005134 ORTHO05D006548 1.4e-70 270.4 290 54.1
Ah.06g191930 Amaranthus hybridus HOM05D005134 ORTHO05D006548 1.1e-67 260.8 247 57.5
SGA_v2.0_scaffold308G48086 Striga asiatica HOM05D005134 ORTHO05D006548 4.2e-67 258.8 132 85.6
Actinidia01853 Actinidia chinensis HOM05D005134 ORTHO05D006548 2.1e-66 256.5 251 56.6
Eucgr.H04289 Eucalyptus grandis HOM05D005134 ORTHO05D006548 1.4e-65 253.8 233 58.8
AUR62004857 Chenopodium quinoa HOM05D005134 ORTHO05D006548 1.8e-65 253.4 248 55.2
HPP92_015224 Vanilla planifolia HOM05D005134 ORTHO05D006548 2.2e-60 236.5 218 57.8
DCAR_002321 Daucus carota HOM05D005134 ORTHO05D006548 8.5e-60 234.6 186 64.5
Rhsim13G0009400 Rhododendron simsii HOM05D005134 ORTHO05D006548 3.2e-59 232.6 186 62.4
SMO367G0112 Selaginella moellendorffii HOM05D005134 ORTHO05D006548 3.2e-59 232.6 162 66.0
Dinv29871 Davidia involucrata HOM05D005134 ORTHO05D006548 1.4e-57 227.3 159 74.2
Os03g0860000 Oryza sativa ssp. japonica HOM05D005134 ORTHO05D006548 6.3e-55 218.4 120 78.3
AUR62040940 Chenopodium quinoa HOM05D005134 ORTHO05D006548 5.3e-54 215.3 207 53.1
Eucgr.H04247 Eucalyptus grandis HOM05D005134 ORTHO05D006548 1.1e-51 207.6 120 75.8
Actinidia38945 Actinidia chinensis HOM05D005134 ORTHO05D006548 2.1e-50 203.4 132 71.2
AagrBONN_evm.TU.Sc2ySwM_344.1164 Anthoceros agrestis HOM05D005134 ORTHO05D006548 1.2e-42 177.6 126 57.9
Psat6g143200 Pisum sativum HOM05D005134 ORTHO05D006548 1.6e-42 177.2 151 58.9
SEGI_11048 Sequoiadendron giganteum HOM05D005134 ORTHO05D006548 6.1e-42 175.3 156 57.7
Cre16.g655100 Chlamydomonas reinhardtii HOM05D005134 ORTHO05D006548 2.5e-35 153.3 177 42.9
vmacro02443 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 4.9e-31 139.0 82 72.0
Manes.15G040000 Manihot esculenta HOM05D005134 ORTHO05D006548 1.4e-30 137.5 86 72.1
Eucgr.H04286 Eucalyptus grandis HOM05D005134 ORTHO05D006548 4.0e-25 119.4 125 52.0
Duzib177G1154 Durio zibethinus HOM05D005134 ORTHO05D013855 5.2e-17 92.4 103 54.4
FAN14G5434 Fragaria x ananassa HOM05D005134 ORTHO05D006548 8.3e-15 85.1 92 55.4
FAN06G2241 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.2e-08 64.7 32 84.4
RcHm_v2.0_Chr6g0274061 Rosa chinensis HOM05D005134 ORTHO05D006548 4.4e-08 62.8 63 58.7
ATR0598G211 Amborella trichopoda HOM05D005134 ORTHO05D067863 5.8e-08 62.4 74 48.6
Sabra19G0029700 Salix brachista HOM05D010192 ORTHO05D012386 5.4e-06 55.8 28 85.7


User provided reference genes

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