Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.21844 Avicennia marina HOM05D005221 ORTHO05D006355 8.5e-126 453.8 241 100.0
Oeu037551.1 Olea europaea HOM05D005221 ORTHO05D006355 1.4e-72 276.9 243 69.1
Cc03_g03470 Coffea canephora HOM05D005221 ORTHO05D006355 5.4e-72 275.0 244 69.7
FvH4_4g15060 Fragaria vesca HOM05D005221 ORTHO05D006355 3.6e-68 262.3 245 64.5
FAN12G4146 Fragaria x ananassa HOM05D005221 ORTHO05D006355 1.8e-67 260.0 243 64.6
QL06p003360 Quercus lobata HOM05D005221 ORTHO05D006355 1.8e-67 260.0 243 65.8
Duzib151G0158 Durio zibethinus HOM05D005221 ORTHO05D006355 3.1e-67 259.2 246 63.8
CSS0023930 Camellia sinensis var. sinensis HOM05D005221 ORTHO05D006355 4.0e-67 258.8 241 65.1
FAN22G0945 Fragaria x ananassa HOM05D005221 ORTHO05D006355 4.0e-67 258.8 244 63.5
FAN07G2107 Fragaria x ananassa HOM05D005221 ORTHO05D006355 1.5e-66 256.9 244 63.5
Manes.03G181200 Manihot esculenta HOM05D005221 ORTHO05D006355 2.0e-66 256.5 243 66.7
Duzib212G0790 Durio zibethinus HOM05D005221 ORTHO05D006355 7.6e-66 254.6 245 64.5
RcHm_v2.0_Chr4g0416801 Rosa chinensis HOM05D005221 ORTHO05D006355 9.9e-66 254.2 245 64.5
TWI53G0458 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 1.7e-65 253.4 242 64.0
Prupe.1G155500 Prunus persica HOM05D005221 ORTHO05D006355 4.9e-65 251.9 243 64.6
Thecc.04G227300 Theobroma cacao HOM05D005221 ORTHO05D006355 6.4e-65 251.5 249 63.1
Potri.010G090700 Populus trichocarpa HOM05D005221 ORTHO05D006355 2.7e-63 246.1 242 65.7
TAR362G0899 Trochodendron aralioides HOM05D005221 ORTHO05D006355 3.5e-63 245.7 243 60.1
Potri.008G150300 Populus trichocarpa HOM05D005221 ORTHO05D006355 3.0e-62 242.7 241 62.7
MD16G1188800 Malus domestica HOM05D005221 ORTHO05D006355 1.5e-61 240.4 245 61.6
TWI09G0254 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 4.3e-61 238.8 240 62.1
Cpa.g.sc8.322 Carica papaya HOM05D005221 ORTHO05D006355 9.6e-61 237.7 253 60.5
Duzib052G0196 Durio zibethinus HOM05D005221 ORTHO05D006355 1.3e-60 237.3 245 57.6
Nitab4.5_0000260g0100 Nicotiana tabacum HOM05D005221 ORTHO05D006355 2.1e-60 236.5 235 63.8
Ca_10924_v3 Cicer arietinum L. HOM05D005221 ORTHO05D006355 1.8e-59 233.4 261 56.7
Peaxi162Scf00437g00052 Petunia axillaris HOM05D005221 ORTHO05D006355 3.1e-59 232.6 230 61.7
COL.COLO4_06196 Corchorus olitorius HOM05D005221 ORTHO05D006355 4.0e-59 232.3 251 59.0
Sed0012211 Sechium edule HOM05D005221 ORTHO05D006355 4.0e-59 232.3 251 57.8
Nitab4.5_0001545g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 5.3e-59 231.9 228 61.8
Cfa015617 Carpinus fangiana HOM05D005221 ORTHO05D006355 1.5e-58 230.3 244 60.2
CAN.G668.8 Capsicum annuum HOM05D005221 ORTHO05D006355 2.6e-58 229.6 225 60.9
Nn4g26263 Nelumbo nucifera HOM05D005221 ORTHO05D006355 2.6e-58 229.6 231 60.2
Glyma.10G249900 Glycine max HOM05D005221 ORTHO05D006355 3.4e-58 229.2 260 57.3
PGSC0003DMG400011822 Solanum tuberosum HOM05D005221 ORTHO05D006355 4.5e-58 228.8 235 57.9
Lj5g0028012 Lotus japonicus HOM05D005221 ORTHO05D006355 5.8e-58 228.4 254 59.8
Manes.15G026700 Manihot esculenta HOM05D005221 ORTHO05D006355 9.9e-58 227.6 247 59.5
Sopen06g019400 Solanum pennellii HOM05D005221 ORTHO05D006355 9.9e-58 227.6 235 57.4
Sabra08G0114400 Salix brachista HOM05D005221 ORTHO05D006355 1.3e-57 227.3 241 61.4
Actinidia23488 Actinidia chinensis HOM05D005221 ORTHO05D006355 2.9e-57 226.1 239 59.8
Solyc06g054280.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 2.9e-57 226.1 235 57.0
Ciclev10005615m.g Citrus clementina HOM05D005221 ORTHO05D006355 3.8e-57 225.7 265 54.3
Sabra10G0052800 Salix brachista HOM05D005221 ORTHO05D006355 6.4e-57 224.9 242 60.7
TPR.G5529 Trifolium pratense HOM05D005221 ORTHO05D006355 6.4e-57 224.9 251 55.4
Aqoxy2G03348 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 8.4e-57 224.6 241 55.6
CiPaw.02G095300 Carya illinoinensis HOM05D005221 ORTHO05D006355 3.2e-56 222.6 245 60.0
MD13G1188400 Malus domestica HOM05D005221 ORTHO05D006355 3.2e-56 222.6 223 59.2
VMungo0720G0147 Vigna mungo HOM05D005221 ORTHO05D006355 3.2e-56 222.6 255 57.6
Phvul.007G054700 Phaseolus vulgaris HOM05D005221 ORTHO05D006355 9.3e-56 221.1 255 58.4
Glyma.20G143700 Glycine max HOM05D005221 ORTHO05D006355 2.7e-55 219.5 255 56.9
Sed0008919 Sechium edule HOM05D005221 ORTHO05D006355 2.7e-55 219.5 233 58.8
Rhsim04G0205100 Rhododendron simsii HOM05D005221 ORTHO05D006355 7.9e-55 218.0 244 58.2
DCAR_030618 Daucus carota HOM05D005221 ORTHO05D006355 1.8e-54 216.9 242 58.7
Medtr1g104840 Medicago truncatula HOM05D005221 ORTHO05D006355 3.0e-54 216.1 248 55.2
MELO3C014491.2 Cucumis melo HOM05D005221 ORTHO05D006355 5.1e-54 215.3 251 56.6
ClCG06G006000 Citrullus lanatus HOM05D005221 ORTHO05D006355 6.7e-54 214.9 230 59.1
Peaxi162Scf00642g00022 Petunia axillaris HOM05D005221 ORTHO05D006355 1.5e-53 213.8 236 58.9
Nn1g02242 Nelumbo nucifera HOM05D005221 ORTHO05D006355 4.3e-53 212.2 252 56.3
CAN.G873.5 Capsicum annuum HOM05D005221 ORTHO05D006355 5.6e-53 211.8 233 55.8
CiPaw.01G163700 Carya illinoinensis HOM05D005221 ORTHO05D006355 5.6e-53 211.8 224 63.4
Dinv38425 Davidia involucrata HOM05D005221 ORTHO05D006355 5.6e-53 211.8 169 72.8
FAN17G2349 Fragaria x ananassa HOM05D005221 ORTHO05D006355 9.6e-53 211.1 244 52.5
Lj3P740T18 Lonicera japonica HOM05D005221 ORTHO05D006355 2.1e-52 209.9 246 54.5
CANSAT78G1299 Cannabis sativa HOM05D005221 ORTHO05D006355 4.8e-52 208.8 283 53.7
PGSC0003DMG400031851 Solanum tuberosum HOM05D005221 ORTHO05D006355 4.8e-52 208.8 243 57.6
Sopen09g030550 Solanum pennellii HOM05D005221 ORTHO05D006355 6.2e-52 208.4 227 58.6
Oeu029026.1 Olea europaea HOM05D005221 ORTHO05D006355 1.4e-51 207.2 170 65.3
Gohir.A09G214300 Gossypium hirsutum HOM05D005221 ORTHO05D006355 4.0e-51 205.7 250 52.0
DCAR_002395 Daucus carota HOM05D005221 ORTHO05D006355 5.3e-51 205.3 240 56.2
Gohir.D09G216800 Gossypium hirsutum HOM05D005221 ORTHO05D006355 9.0e-51 204.5 248 51.6
MSTRG.4014 Avicennia marina HOM05D005221 ORTHO05D006355 1.5e-50 203.8 241 56.4
Nitab4.5_0000321g0080 Nicotiana tabacum HOM05D005221 ORTHO05D006355 1.5e-50 203.8 232 55.2
Solyc09g075740.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 2.0e-50 203.4 227 55.9
Migut.N00171 Erythranthe guttata HOM05D005221 ORTHO05D006355 3.4e-50 202.6 268 55.2
Gorai.006G237300 Gossypium raimondii HOM05D005221 ORTHO05D006355 4.5e-50 202.2 248 51.2
ECA234G2268 Erigeron canadensis HOM05D005221 ORTHO05D006355 1.0e-49 201.1 247 51.0
Sc13g0004240 Simmondsia chinensis HOM05D005221 ORTHO05D006355 1.0e-49 201.1 270 54.1
CsaV3_6G038280 Cucumis sativus L. HOM05D005221 ORTHO05D006355 3.8e-49 199.1 251 53.4
SGA_v2.0_scaffold10G05107 Striga asiatica HOM05D005221 ORTHO05D006355 1.9e-48 196.8 229 57.6
EL10As3g23360 Beta vulgaris HOM05D005221 ORTHO05D006355 4.2e-48 195.7 275 49.8
DCAR_024599 Daucus carota HOM05D005221 ORTHO05D006355 3.5e-47 192.6 242 51.2
HanXRQChr04g0110301 Helianthus annuus HOM05D005221 ORTHO05D006355 1.8e-46 190.3 245 53.5
Eucgr.B01092 Eucalyptus grandis HOM05D005221 ORTHO05D006355 1.1e-45 187.6 271 45.4
Hma1.2p1_0511F.1_g168910 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 1.1e-45 187.6 224 54.0
Lsat_1_v5_gn_5_148500 Lactuca sativa HOM05D005221 ORTHO05D006355 2.5e-45 186.4 233 53.6
Sc19g0004310 Simmondsia chinensis HOM05D005221 ORTHO05D006355 7.4e-45 184.9 264 49.6
THA.LOC104802759 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 1.3e-44 184.1 243 53.5
TAR636G2071 Trochodendron aralioides HOM05D002203 ORTHO05D002647 6.3e-44 181.8 201 60.2
HanXRQChr10g0296561 Helianthus annuus HOM05D005221 ORTHO05D006355 1.1e-43 181.0 246 50.4
Lalb_Chr06g0160581 Lupinus albus HOM05D005221 ORTHO05D006355 6.9e-43 178.3 244 51.6
PGR142G0441 Punica granatum HOM05D005221 ORTHO05D006355 5.9e-42 175.3 284 48.9
MBI17_g31753_MAGBIO Magnolia biondii HOM05D005221 ORTHO05D006355 7.6e-42 174.9 231 49.4
Aa31LG5G16450 Aethionema arabicum HOM05D005221 ORTHO05D006355 3.8e-41 172.6 225 54.7
PGR004G1499 Punica granatum HOM05D005221 ORTHO05D006355 4.2e-40 169.1 278 40.6
Aqoxy5G00503 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 3.6e-39 166.0 231 50.2
Carub.0003s0539 Capsella rubella HOM05D005221 ORTHO05D006355 3.6e-39 166.0 240 46.7
THA.LOC104818779 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 1.3e-38 164.1 262 45.8
AL3G16790 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 1.8e-38 163.7 237 44.7
BraA05t22925Z Brassica rapa HOM05D005221 ORTHO05D006355 3.0e-38 162.9 240 47.5
A05p42050 Brassica napus HOM05D005221 ORTHO05D006355 3.9e-38 162.5 241 46.5
BcaC05g30072 Brassica carinata HOM05D005221 ORTHO05D006355 5.1e-38 162.2 245 44.9
C05p61280 Brassica napus HOM05D005221 ORTHO05D006355 1.1e-37 161.0 245 46.9
BolC5t34787H Brassica oleracea HOM05D005221 ORTHO05D006355 1.1e-37 161.0 245 46.9
AT3G05980 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 3.7e-36 156.0 242 43.4
BraA03t10262Z Brassica rapa HOM05D005221 ORTHO05D006355 1.1e-35 154.5 244 49.2
BolC3t13571H Brassica oleracea HOM05D005221 ORTHO05D006355 1.8e-35 153.7 230 46.1
Nitab4.5_0007609g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 4.1e-35 152.5 203 52.2
BolC9t58548H Brassica oleracea HOM05D005221 ORTHO05D006355 5.3e-35 152.1 260 45.8
Lj6P597T84 Lonicera japonica HOM05D005221 ORTHO05D006355 1.5e-34 150.6 169 55.0
BraA01t04457Z Brassica rapa HOM05D005221 ORTHO05D006355 7.7e-34 148.3 241 43.2
CARHR080490 Cardamine hirsuta HOM05D005221 ORTHO05D006355 1.0e-33 147.9 241 45.6
Thhalv10021379m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 1.0e-33 147.9 250 44.4
A03p09440 Brassica napus HOM05D005221 ORTHO05D006355 1.3e-33 147.5 237 48.5
Sp3g04920 Schrenkiella parvula HOM05D005221 ORTHO05D006355 1.3e-33 147.5 249 45.0
BcaC09g47869 Brassica carinata HOM05D005221 ORTHO05D006355 2.2e-33 146.7 237 44.7
BolC1t05645H Brassica oleracea HOM05D005221 ORTHO05D006355 2.2e-33 146.7 239 44.4
A10p20340 Brassica napus HOM05D005221 ORTHO05D006355 3.8e-33 146.0 262 44.7
BraA10t44105Z Brassica rapa HOM05D005221 ORTHO05D006355 3.8e-33 146.0 262 44.7
BcaB01g05141 Brassica carinata HOM05D005221 ORTHO05D006355 6.5e-33 145.2 229 45.0
BcaB01g04866 Brassica carinata HOM05D005221 ORTHO05D006355 2.5e-32 143.3 234 42.7
C03p11020 Brassica napus HOM05D005221 ORTHO05D006355 2.5e-32 143.3 233 44.6
BcaC04g18576 Brassica carinata HOM05D005221 ORTHO05D006355 3.2e-32 142.9 264 43.9
C09p56940 Brassica napus HOM05D005221 ORTHO05D006355 3.2e-32 142.9 264 43.9
Atru.chr4.2515 Acer truncatum HOM05D005221 ORTHO05D006355 4.2e-32 142.5 252 46.4
Thhalv10016073m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 1.2e-31 141.0 244 45.9
AT5G19340 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 1.0e-30 137.9 264 44.7
Carub.0006s1768 Capsella rubella HOM05D005221 ORTHO05D006355 2.3e-30 136.7 258 45.0
Hma1.2p1_0995F.1_g245620 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 6.7e-30 135.2 158 52.5
AL6G30830 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 1.5e-26 124.0 250 44.0
PSO302G0248 Papaver somniferum HOM05D005221 ORTHO05D006355 1.0e-25 121.3 143 49.0
Ah.04g154490 Amaranthus hybridus HOM05D005221 ORTHO05D006355 1.3e-25 120.9 195 44.6
BcaB08g36581 Brassica carinata HOM05D005221 ORTHO05D006355 1.3e-25 120.9 255 40.4
CARHR193620 Cardamine hirsuta HOM05D005221 ORTHO05D006355 1.3e-25 120.9 252 43.7
Sp6g25070 Schrenkiella parvula HOM05D005221 ORTHO05D006355 6.5e-25 118.6 250 42.4
SGA_v2.0_scaffold237G43792 Striga asiatica HOM05D005221 ORTHO05D006355 6.5e-25 118.6 245 38.8
SGA_v2.0_scaffold39G15291 Striga asiatica HOM05D005221 ORTHO05D006355 1.6e-23 114.0 241 39.8
BcaNung07026 Brassica carinata HOM05D005221 ORTHO05D006355 2.1e-23 113.6 154 46.8
arahy.Tifrunner.gnm1.ann1.0RM5BV Arachis hypogaea HOM05D005221 ORTHO05D006355 2.7e-23 113.2 242 39.3
AUR62038640 Chenopodium quinoa HOM05D005221 ORTHO05D006355 1.1e-19 101.3 174 40.8
Nn5g28878 Nelumbo nucifera HOM05D005221 ORTHO05D006355 2.0e-18 97.1 103 57.3
Nn3g20708 Nelumbo nucifera HOM05D005221 ORTHO05D006355 4.7e-15 85.9 106 52.8
Psat6g208720 Pisum sativum HOM05D005221 ORTHO05D006355 5.2e-14 82.4 87 64.4
AUR62038093 Chenopodium quinoa HOM05D005221 ORTHO05D006355 1.1e-11 74.7 150 38.0
Nn1g04890 Nelumbo nucifera HOM05D002458 ORTHO05D002603 1.2e-07 61.2 126 36.5
ATR0626G396 Amborella trichopoda HOM05D005221 ORTHO05D006355 1.6e-07 60.8 139 34.5
BcaC08g43669 Brassica carinata HOM05D003370 ORTHO05D003848 1.6e-07 60.8 112 35.7
BolC6t36173H Brassica oleracea HOM05D003370 ORTHO05D003848 1.6e-07 60.8 112 35.7
C06p10920 Brassica napus HOM05D003370 ORTHO05D003848 2.1e-07 60.5 112 35.7
Manes.12G102900 Manihot esculenta HOM05D002458 ORTHO05D002603 1.8e-06 57.4 137 33.6
PSO541G0955 Papaver somniferum HOM05D002458 ORTHO05D002603 2.3e-06 57.0 137 34.3
PSO675G2615 Papaver somniferum HOM05D002458 ORTHO05D002603 2.3e-06 57.0 137 33.6
MBI06_g24647_MAGBIO Magnolia biondii HOM05D002458 ORTHO05D002603 3.0e-06 56.6 129 35.7
Nn1g06084 Nelumbo nucifera HOM05D005221 ORTHO05D006355 8.8e-06 55.1 54 55.6
Nn5g30245 Nelumbo nucifera HOM05D002458 ORTHO05D002603 8.8e-06 55.1 126 36.5


User provided reference genes

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