Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.21813 Avicennia marina HOM05D003864 ORTHO05D004658 4.5e-61 237.7 113 100.0
SalBow2G1899 Salvia bowleyana HOM05D003864 ORTHO05D004658 7.0e-46 187.2 106 81.1
MSTRG.10054 Avicennia marina HOM05D003864 ORTHO05D004658 1.0e-44 183.3 104 80.8
Atru.chr4.2755 Acer truncatum HOM05D003864 ORTHO05D004658 6.5e-44 180.6 104 79.8
Cc03_g02350 Coffea canephora HOM05D003864 ORTHO05D004658 1.5e-43 179.5 108 76.9
QL06p007391 Quercus lobata HOM05D003864 ORTHO05D004658 1.9e-43 179.1 111 74.8
Rhsim04G0216400 Rhododendron simsii HOM05D003864 ORTHO05D004658 1.9e-43 179.1 111 74.8
Sabra08G0157300 Salix brachista HOM05D003864 ORTHO05D004658 5.5e-43 177.6 112 72.3
Ciclev10005325m.g Citrus clementina HOM05D003864 ORTHO05D004658 1.6e-42 176.0 104 76.9
Dinv38324 Davidia involucrata HOM05D003864 ORTHO05D004658 1.6e-42 176.0 111 73.9
Migut.G00209 Erythranthe guttata HOM05D003864 ORTHO05D004658 2.1e-42 175.6 104 76.0
Actinidia23428 Actinidia chinensis HOM05D003864 ORTHO05D004658 3.6e-42 174.9 104 77.9
Haze_01063 Corylus avellana HOM05D003864 ORTHO05D004658 3.6e-42 174.9 111 73.0
Prupe.1G142000 Prunus persica HOM05D003864 ORTHO05D004658 4.7e-42 174.5 106 76.4
Manes.15G016900 Manihot esculenta HOM05D003864 ORTHO05D004658 1.4e-41 172.9 104 75.0
PGR004G1016 Punica granatum HOM05D003864 ORTHO05D004658 1.8e-41 172.6 104 72.1
vmacro08202 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 1.8e-41 172.6 108 75.9
Potri.008G204700 Populus trichocarpa HOM05D003864 ORTHO05D004658 2.3e-41 172.2 104 74.0
Nitab4.5_0004537g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 3.0e-41 171.8 107 75.7
CiPaw.01G152900 Carya illinoinensis HOM05D003864 ORTHO05D004658 4.0e-41 171.4 104 76.0
Dinv44425 Davidia involucrata HOM05D003864 ORTHO05D004658 4.0e-41 171.4 111 72.1
GSVIVG01017804001 Vitis vinifera HOM05D003864 ORTHO05D004658 6.8e-41 170.6 111 71.2
Lj6A670T81 Lonicera japonica HOM05D003864 ORTHO05D004658 1.2e-40 169.9 110 73.6
PGSC0003DMG400010656 Solanum tuberosum HOM05D003864 ORTHO05D004658 1.2e-40 169.9 107 74.8
Duzib151G0071 Durio zibethinus HOM05D003864 ORTHO05D004658 2.6e-40 168.7 104 74.0
MD16G1174800 Malus domestica HOM05D003864 ORTHO05D004658 2.6e-40 168.7 107 72.0
PGR031G0559 Punica granatum HOM05D003864 ORTHO05D004658 2.6e-40 168.7 104 75.0
Cfa015492 Carpinus fangiana HOM05D003864 ORTHO05D004658 3.4e-40 168.3 104 75.0
CiPaw.02G086600 Carya illinoinensis HOM05D003864 ORTHO05D004658 3.4e-40 168.3 104 74.0
Glyma.05G133900 Glycine max HOM05D003864 ORTHO05D004658 3.4e-40 168.3 104 75.0
arahy.Tifrunner.gnm1.ann1.CLS5KG Arachis hypogaea HOM05D003864 ORTHO05D004658 4.4e-40 167.9 111 68.5
Peaxi162Scf00386g00316 Petunia axillaris HOM05D003864 ORTHO05D004658 5.7e-40 167.5 107 74.8
Actinidia00050 Actinidia chinensis HOM05D003864 ORTHO05D004658 7.5e-40 167.2 104 73.1
Thecc.04G277700 Theobroma cacao HOM05D003864 ORTHO05D004658 7.5e-40 167.2 104 74.0
ClCG06G005360 Citrullus lanatus HOM05D003864 ORTHO05D004658 1.3e-39 166.4 104 73.1
Eucgr.B01266 Eucalyptus grandis HOM05D003864 ORTHO05D004658 1.3e-39 166.4 104 73.1
arahy.Tifrunner.gnm1.ann1.ZU35GG Arachis hypogaea HOM05D003864 ORTHO05D004658 1.7e-39 166.0 111 67.6
FvH4_4g17200 Fragaria vesca HOM05D003864 ORTHO05D004658 1.7e-39 166.0 104 74.0
Solyc06g054530.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 1.7e-39 166.0 106 71.7
Sopen01g029580 Solanum pennellii HOM05D003864 ORTHO05D004658 1.7e-39 166.0 107 73.8
BraA05t19685Z Brassica rapa HOM05D003864 ORTHO05D004658 2.2e-39 165.6 108 73.1
Nitab4.5_0001459g0140 Nicotiana tabacum HOM05D003864 ORTHO05D004658 2.2e-39 165.6 108 72.2
TWI53G0015 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 2.2e-39 165.6 104 72.1
TWI53G1008 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 2.2e-39 165.6 104 72.1
Manes.03G191300 Manihot esculenta HOM05D003864 ORTHO05D004658 2.8e-39 165.2 104 73.1
Sc19g0004950 Simmondsia chinensis HOM05D003864 ORTHO05D004658 3.7e-39 164.9 106 67.9
Ah.12g064180 Amaranthus hybridus HOM05D003864 ORTHO05D004658 4.8e-39 164.5 104 70.2
Hma1.2p1_0150F.1_g066600 Hydrangea macrophylla HOM05D003864 ORTHO05D004658 4.8e-39 164.5 104 72.1
Lj4g0016445 Lotus japonicus HOM05D003864 ORTHO05D004658 4.8e-39 164.5 104 71.2
Peaxi162Scf00033g01410 Petunia axillaris HOM05D003864 ORTHO05D004658 4.8e-39 164.5 108 70.4
CsaV3_6G017400 Cucumis sativus L. HOM05D003864 ORTHO05D004658 6.3e-39 164.1 104 70.2
PSO210G7573 Papaver somniferum HOM05D003864 ORTHO05D004658 6.3e-39 164.1 105 70.5
Rhsim02G0013600 Rhododendron simsii HOM05D003864 ORTHO05D004658 6.3e-39 164.1 106 70.8
MELO3C021355.2 Cucumis melo HOM05D003864 ORTHO05D004658 8.3e-39 163.7 104 70.2
Sopen06g019600 Solanum pennellii HOM05D003864 ORTHO05D004658 1.1e-38 163.3 106 70.8
SGA_v2.0_scaffold89G27550 Striga asiatica HOM05D003864 ORTHO05D004658 1.1e-38 163.3 107 71.0
TAR362G0395 Trochodendron aralioides HOM05D003864 ORTHO05D004658 1.1e-38 163.3 106 70.8
unitig_748.g8369 Utricularia gibba HOM05D000472 ORTHO05D000344 1.1e-38 163.3 109 69.7
Aqoxy2G03115 Aquilegia oxysepala HOM05D003864 ORTHO05D004658 1.4e-38 162.9 106 71.7
Gorai.011G185900 Gossypium raimondii HOM05D003864 ORTHO05D004658 1.4e-38 162.9 104 72.1
Psat7g088240 Pisum sativum HOM05D003864 ORTHO05D004658 1.8e-38 162.5 111 68.5
PGSC0003DMG400030786 Solanum tuberosum HOM05D003864 ORTHO05D004658 1.8e-38 162.5 104 72.1
PSO170G3769 Papaver somniferum HOM05D003864 ORTHO05D004658 2.4e-38 162.2 105 69.5
Ca_00573_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 4.1e-38 161.4 104 69.2
Gohir.A10G101440 Gossypium hirsutum HOM05D003864 ORTHO05D004658 4.1e-38 161.4 104 71.2
MD13G1173800 Malus domestica HOM05D003864 ORTHO05D004658 4.1e-38 161.4 94 76.6
Nitab4.5_0001054g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 4.1e-38 161.4 108 70.4
BolC3t14979H Brassica oleracea HOM05D003864 ORTHO05D004658 5.4e-38 161.0 106 71.7
Gohir.D10G166700 Gossypium hirsutum HOM05D003864 ORTHO05D004658 5.4e-38 161.0 104 71.2
Phvul.002G188400 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 5.4e-38 161.0 104 69.2
Glyma.08G088600 Glycine max HOM05D003864 ORTHO05D004658 9.1e-38 160.2 104 72.1
Sed0008062 Sechium edule HOM05D003864 ORTHO05D004658 9.1e-38 160.2 104 71.2
Ca_18234_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 1.2e-37 159.8 104 69.2
TAR633G1069 Trochodendron aralioides HOM05D003864 ORTHO05D004658 1.2e-37 159.8 106 70.8
AL4G36380 Arabidopsis lyrata HOM05D003864 ORTHO05D004658 1.6e-37 159.5 104 72.1
AT2G39080 Arabidopsis thaliana HOM05D003864 ORTHO05D004658 1.6e-37 159.5 104 72.1
COL.COLO4_13927 Corchorus olitorius HOM05D003864 ORTHO05D004658 1.6e-37 159.5 108 70.4
A03p21870 Brassica napus HOM05D003864 ORTHO05D004658 2.0e-37 159.1 106 70.8
BraA03t11423Z Brassica rapa HOM05D003864 ORTHO05D004658 2.0e-37 159.1 106 70.8
Lalb_Chr18g0055711 Lupinus albus HOM05D003864 ORTHO05D004658 2.0e-37 159.1 110 68.2
LjContig00389g0005087 Lotus japonicus HOM05D003864 ORTHO05D004658 2.7e-37 158.7 104 70.2
Oeu044793.1 Olea europaea HOM05D003864 ORTHO05D004658 2.7e-37 158.7 94 75.5
Solyc01g067630.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 2.7e-37 158.7 104 71.2
Os01g0367100 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 3.5e-37 158.3 104 69.2
C03p25940 Brassica napus HOM05D003864 ORTHO05D004658 4.5e-37 157.9 104 71.2
Carub.0004s2113 Capsella rubella HOM05D003864 ORTHO05D004658 4.5e-37 157.9 104 71.2
Lalb_Chr20g0118111 Lupinus albus HOM05D003864 ORTHO05D004658 4.5e-37 157.9 110 68.2
Sc25g0004750 Simmondsia chinensis HOM05D003864 ORTHO05D004658 4.5e-37 157.9 104 68.3
Psat1g187240 Pisum sativum HOM05D003864 ORTHO05D004658 1.0e-36 156.8 106 67.0
Nn4g25986 Nelumbo nucifera HOM05D003864 ORTHO05D004658 1.3e-36 156.4 104 68.3
THA.LOC104820237 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 1.7e-36 156.0 104 69.2
Phvul.006G161500 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 2.2e-36 155.6 104 68.3
Sp4g21430 Schrenkiella parvula HOM05D003864 ORTHO05D004658 2.2e-36 155.6 104 70.2
DCAR_002443 Daucus carota HOM05D003864 ORTHO05D004658 2.9e-36 155.2 92 75.0
Thhalv10016876m.g Eutrema salsugineum HOM05D003864 ORTHO05D004658 3.8e-36 154.8 104 69.2
Lsat_1_v5_gn_5_56881 Lactuca sativa HOM05D003864 ORTHO05D004658 3.8e-36 154.8 106 69.8
Zm00001eb341670 Zea mays HOM05D003864 ORTHO05D004658 3.8e-36 154.8 106 67.0
EL10Ac6g14524 Beta vulgaris HOM05D003864 ORTHO05D004658 5.0e-36 154.5 109 66.1
Nitab4.5_0000784g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 6.5e-36 154.1 97 73.2
TPR.G1486 Trifolium pratense HOM05D003864 ORTHO05D004658 6.5e-36 154.1 104 66.3
Zm00001eb131760 Zea mays HOM05D003864 ORTHO05D004658 6.5e-36 154.1 104 69.2
THA.LOC104821766 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 1.5e-35 152.9 104 67.3
Medtr4g094742 Medicago truncatula HOM05D003864 ORTHO05D004658 1.9e-35 152.5 102 69.6
CAN.G256.9 Capsicum annuum HOM05D003864 ORTHO05D004658 4.2e-35 151.4 109 67.9
ECA240G1720 Erigeron canadensis HOM05D003864 ORTHO05D004658 4.2e-35 151.4 104 67.3
ATR0706G015 Amborella trichopoda HOM05D003864 ORTHO05D004658 5.5e-35 151.0 96 69.8
CDE01G0506 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 5.5e-35 151.0 103 65.0
TPR.G23836 Trifolium pratense HOM05D003864 ORTHO05D004658 5.5e-35 151.0 104 67.3
RcHm_v2.0_Chr4g0421021 Rosa chinensis HOM05D003864 ORTHO05D004658 7.2e-35 150.6 94 73.4
vmacro15256 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 4.7e-34 147.9 164 48.8
vmacro22597 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 4.7e-34 147.9 164 48.8
Glyma.15G097900 Glycine max HOM05D003864 ORTHO05D004658 8.0e-34 147.1 104 65.4
Hund20596 Selenicereus undatus HOM05D003864 ORTHO05D004658 1.0e-33 146.7 96 68.8
Nn3g21324 Nelumbo nucifera HOM05D003864 ORTHO05D004658 1.4e-33 146.4 115 60.9
Glyma.13G215300 Glycine max HOM05D003864 ORTHO05D004658 1.8e-33 146.0 105 64.8
DCAR_027110 Daucus carota HOM05D003864 ORTHO05D004658 8.8e-33 143.7 91 69.2
CDE05G0625 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 2.0e-32 142.5 110 60.0
VMungo0540G0878 Vigna mungo HOM05D006883 ORTHO05D008624 2.6e-32 142.1 94 68.1
A05p07200 Brassica napus HOM05D003864 ORTHO05D004658 3.4e-32 141.7 92 71.7
Sed0015457 Sechium edule HOM05D003864 ORTHO05D004658 3.4e-32 141.7 104 64.4
MBI19_g44903_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 4.4e-32 141.4 94 67.0
BcaB01g03648 Brassica carinata HOM05D003864 ORTHO05D004658 9.8e-32 140.2 95 68.4
BcaC02g12038 Brassica carinata HOM05D003864 ORTHO05D004658 9.8e-32 140.2 92 70.7
C04p08610 Brassica napus HOM05D003864 ORTHO05D004658 9.8e-32 140.2 92 70.7
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 9.8e-32 140.2 92 70.7
BcaB02g09145 Brassica carinata HOM05D003864 ORTHO05D004658 2.2e-31 139.0 92 69.6
Medtr2g020190 Medicago truncatula HOM05D003864 ORTHO05D004658 2.2e-31 139.0 95 65.3
VMungo0251G3051 Vigna mungo HOM05D003864 ORTHO05D004658 2.2e-31 139.0 89 70.8
SEGI_14152 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 2.8e-31 138.7 108 58.3
Aa31LG5G20520 Aethionema arabicum HOM05D003864 ORTHO05D004658 8.3e-31 137.1 88 67.0
Cpa.g.sc1008.4 Carica papaya HOM05D003864 ORTHO05D004658 8.3e-31 137.1 94 66.0
SGA_v2.0_scaffold57G20242 Striga asiatica HOM05D003864 ORTHO05D004658 4.1e-30 134.8 109 65.1
Lalb_Chr07g0188241 Lupinus albus HOM05D003864 ORTHO05D004658 2.7e-29 132.1 98 61.2
AagrBONN_evm.TU.Sc2ySwM_344.1910 Anthoceros agrestis HOM05D003864 ORTHO05D004658 4.5e-29 131.3 105 61.0
Pp3c13_19760 Physcomitrium patens HOM05D003864 ORTHO05D004658 1.7e-28 129.4 104 58.7
Pp3c12_8620 Physcomitrium patens HOM05D003864 ORTHO05D004658 2.9e-28 128.6 104 59.6
CBR_g37156 Chara braunii HOM05D003864 ORTHO05D004658 5.0e-28 127.9 105 58.1
Mapoly0090s0075 Marchantia polymorpha HOM05D003864 ORTHO05D004658 8.6e-28 127.1 105 61.0
SMO356G0587 Selaginella moellendorffii HOM05D003864 ORTHO05D004658 4.7e-26 121.3 104 54.8
CSS0001944 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 2.0e-24 115.9 73 74.0
CSS0038005 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 2.6e-24 115.5 73 72.6
FAN22G0711 Fragaria x ananassa HOM05D003864 ORTHO05D004658 2.9e-23 112.1 69 72.5
FAN07G1078 Fragaria x ananassa HOM05D003864 ORTHO05D004658 8.3e-23 110.5 69 71.0
FAN12G3853 Fragaria x ananassa HOM05D003864 ORTHO05D004658 8.3e-23 110.5 69 71.0
FAN17G0790 Fragaria x ananassa HOM05D003864 ORTHO05D004658 2.4e-22 109.0 69 69.6
CARHR133840 Cardamine hirsuta HOM05D003864 ORTHO05D004658 1.2e-21 106.7 70 68.6
MCO15G076 Micromonas commoda HOM05D003864 ORTHO05D004658 2.0e-21 105.9 106 48.1
arahy.Tifrunner.gnm1.ann1.858I9V Arachis hypogaea HOM05D003864 ORTHO05D004658 2.7e-21 105.5 122 45.9
arahy.Tifrunner.gnm1.ann1.WPBE4U Arachis hypogaea HOM05D003864 ORTHO05D004658 3.5e-21 105.1 122 45.1
MBI19_g26585_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 5.9e-21 104.4 74 59.5
HPP92_017180 Vanilla planifolia HOM05D003864 ORTHO05D004658 5.9e-21 104.4 93 54.8
SEGI_31487 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 7.8e-21 104.0 67 64.2
AUR62007746 Chenopodium quinoa HOM05D003864 ORTHO05D004658 1.7e-20 102.8 74 60.8
Os01g0367400 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 8.6e-20 100.5 74 60.8
HanXRQChr13g0411231 Helianthus annuus HOM05D003864 ORTHO05D004658 9.5e-19 97.1 67 65.7
PRCOL_00006073 Prasinoderma coloniale HOM05D003864 ORTHO05D004658 9.5e-19 97.1 107 43.0
CSS0041699 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 2.1e-18 95.9 140 42.9
Cre13.g608000 Chlamydomonas reinhardtii HOM05D003864 ORTHO05D004658 2.8e-18 95.5 106 45.3
CDE12G0924 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 8.0e-18 94.0 66 62.1
AUR62002937 Chenopodium quinoa HOM05D003864 ORTHO05D004658 5.4e-14 81.3 127 36.2
SHI00297 Sapria himalayana HOM05D003864 ORTHO05D004658 3.6e-10 68.6 207 29.5
Actinidia25721 Actinidia chinensis HOM05D003864 ORTHO05D004658 6.2e-10 67.8 37 75.7
Medtr8g027510 Medicago truncatula HOM05D003864 ORTHO05D004658 1.8e-09 66.2 44 70.5
RcHm_v2.0_Chr4g0421071 Rosa chinensis HOM05D003864 ORTHO05D004658 6.8e-09 64.3 39 69.2
C04p08680 Brassica napus HOM05D003864 ORTHO05D004658 1.2e-08 63.5 61 52.5
CSS0003637 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 1.5e-08 63.2 36 69.4
CSS0011053 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 1.5e-08 63.2 36 69.4


User provided reference genes

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