Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.21776 Avicennia marina HOM05D001765 ORTHO05D005876 3.6e-77 292.4 263 100.0
unitig_749.g13366 Utricularia gibba HOM05D001765 ORTHO05D005876 1.4e-68 263.8 153 90.2
Cc03_g00980 Coffea canephora HOM05D001765 ORTHO05D005876 4.1e-65 252.3 148 90.5
Nitab4.5_0004323g0040 Nicotiana tabacum HOM05D001765 ORTHO05D005876 1.2e-64 250.8 153 86.9
Oeu001465.1 Olea europaea HOM05D001765 ORTHO05D005876 1.2e-64 250.8 156 85.9
Oeu063485.1 Olea europaea HOM05D001765 ORTHO05D005876 1.6e-64 250.4 156 87.2
SGA_v2.0_scaffold119G32663 Striga asiatica HOM05D001765 ORTHO05D005876 1.6e-64 250.4 155 88.4
Nitab4.5_0000276g0120 Nicotiana tabacum HOM05D001765 ORTHO05D005876 2.0e-64 250.0 153 86.9
Peaxi162Scf00065g00002 Petunia axillaris HOM05D001765 ORTHO05D005876 2.7e-64 249.6 153 86.9
CAN.G874.72 Capsicum annuum HOM05D001765 ORTHO05D005876 3.5e-64 249.2 153 88.2
Dinv44303 Davidia involucrata HOM05D001765 ORTHO05D005876 4.5e-64 248.8 153 85.6
Nitab4.5_0000456g0120 Nicotiana tabacum HOM05D001765 ORTHO05D005876 7.8e-64 248.1 153 85.6
Migut.N00048 Erythranthe guttata HOM05D001765 ORTHO05D005876 1.0e-63 247.7 152 86.8
Actinidia40362 Actinidia chinensis HOM05D001765 ORTHO05D005876 2.3e-63 246.5 154 85.7
Lj6P689T37 Lonicera japonica HOM05D001765 ORTHO05D005876 8.6e-63 244.6 154 84.4
Nitab4.5_0010629g0030 Nicotiana tabacum HOM05D001765 ORTHO05D005876 1.1e-62 244.2 151 85.4
Solyc01g060030.3 Solanum lycopersicum HOM05D001765 ORTHO05D005876 1.2e-61 240.7 153 85.6
Sopen01g026230 Solanum pennellii HOM05D001765 ORTHO05D005876 1.2e-61 240.7 153 85.6
CSS0002630 Camellia sinensis var. sinensis HOM05D001765 ORTHO05D005876 2.8e-61 239.6 155 82.6
CSS0034555 Camellia sinensis var. sinensis HOM05D001765 ORTHO05D005876 1.0e-60 237.7 149 85.2
CDE12G0657 Ceratophyllum demersum HOM05D001765 ORTHO05D005876 1.0e-60 237.7 154 83.1
Nn3g21679 Nelumbo nucifera HOM05D001765 ORTHO05D005876 1.2e-59 234.2 155 81.3
TWI73G0761 Tripterygium wilfordii HOM05D001765 ORTHO05D005876 2.6e-59 233.0 154 79.9
Aqoxy1G02157 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 3.4e-59 232.6 155 81.9
Hma1.2p1_0013F.1_g008730 Hydrangea macrophylla HOM05D001765 ORTHO05D005876 5.7e-59 231.9 153 79.7
Hma1.2p1_0078F.1_g040010 Hydrangea macrophylla HOM05D001765 ORTHO05D005876 5.7e-59 231.9 144 84.0
MD16G1157200 Malus domestica HOM05D001765 ORTHO05D005876 5.7e-59 231.9 155 82.6
DCAR_002506 Daucus carota HOM05D001765 ORTHO05D005876 1.3e-58 230.7 153 81.0
Lsat_1_v5_gn_6_116901 Lactuca sativa HOM05D001765 ORTHO05D005876 1.3e-58 230.7 153 80.4
MBI19_g07244_MAGBIO Magnolia biondii HOM05D001765 ORTHO05D005876 1.7e-58 230.3 155 81.3
CiPaw.02G075900 Carya illinoinensis HOM05D001765 ORTHO05D005876 2.2e-58 229.9 154 82.5
HanXRQChr05g0145931 Helianthus annuus HOM05D001765 ORTHO05D005876 2.9e-58 229.6 154 79.2
QL06p011625 Quercus lobata HOM05D001765 ORTHO05D005876 2.9e-58 229.6 150 83.3
Gorai.006G079200 Gossypium raimondii HOM05D001765 ORTHO05D005876 3.7e-58 229.2 153 80.4
Ciclev10005673m.g Citrus clementina HOM05D001765 ORTHO05D005876 4.9e-58 228.8 155 80.0
Gohir.D09G064400 Gossypium hirsutum HOM05D001765 ORTHO05D005876 4.9e-58 228.8 153 80.4
Gohir.A09G065500 Gossypium hirsutum HOM05D001765 ORTHO05D005876 6.4e-58 228.4 153 80.4
Nn4g25612 Nelumbo nucifera HOM05D001765 ORTHO05D005876 6.4e-58 228.4 148 83.1
Prupe.1G122100 Prunus persica HOM05D001765 ORTHO05D005876 8.3e-58 228.0 155 81.3
TWI09G0718 Tripterygium wilfordii HOM05D001765 ORTHO05D005876 8.3e-58 228.0 154 79.2
Aqoxy5G01535 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 1.4e-57 227.3 155 80.6
vmacro08062 Vaccinium macrocarpon HOM05D001765 ORTHO05D005876 1.4e-57 227.3 157 82.2
MD13G1156300 Malus domestica HOM05D001765 ORTHO05D005876 1.8e-57 226.9 150 82.0
Rhsim04G0234200 Rhododendron simsii HOM05D001765 ORTHO05D005876 2.4e-57 226.5 150 82.7
TAR633G2429 Trochodendron aralioides HOM05D001765 ORTHO05D005876 4.1e-57 225.7 152 80.3
ECA246G2338 Erigeron canadensis HOM05D001765 ORTHO05D005876 5.4e-57 225.3 151 80.8
TAR365G0409 Trochodendron aralioides HOM05D001765 ORTHO05D005876 5.4e-57 225.3 151 80.8
Haze_01276 Corylus avellana HOM05D001765 ORTHO05D005876 7.0e-57 224.9 156 80.8
Haze_17391 Corylus avellana HOM05D001765 ORTHO05D005876 7.0e-57 224.9 156 80.8
Atru.chr4.3029 Acer truncatum HOM05D001765 ORTHO05D005876 9.2e-57 224.6 152 79.6
CANSAT78G1829 Cannabis sativa HOM05D001765 ORTHO05D005876 1.6e-56 223.8 150 81.3
Thecc.04G297600 Theobroma cacao HOM05D001765 ORTHO05D005876 1.6e-56 223.8 151 82.1
Prupe.1G073200 Prunus persica HOM05D001765 ORTHO05D005876 2.0e-56 223.4 146 82.9
Eucgr.A00351 Eucalyptus grandis HOM05D001765 ORTHO05D005876 3.5e-56 222.6 152 77.0
FvH4_4g19461 Fragaria vesca HOM05D001765 ORTHO05D005876 3.5e-56 222.6 153 81.0
ATR0706G059 Amborella trichopoda HOM05D001765 ORTHO05D005876 6.0e-56 221.9 145 81.4
EL10Ac4g08905 Beta vulgaris HOM05D001765 ORTHO05D005876 6.0e-56 221.9 154 78.6
Cpa.g.sc9.87 Carica papaya HOM05D001765 ORTHO05D005876 6.0e-56 221.9 154 79.2
Ah.04g162900 Amaranthus hybridus HOM05D001765 ORTHO05D005876 7.8e-56 221.5 155 79.4
CiPaw.01G139800 Carya illinoinensis HOM05D001765 ORTHO05D005876 7.8e-56 221.5 155 80.0
AUR62037504 Chenopodium quinoa HOM05D001765 ORTHO05D005876 7.8e-56 221.5 155 79.4
Duzib052G0074 Durio zibethinus HOM05D001765 ORTHO05D005876 7.8e-56 221.5 154 79.9
PGR031G3587 Punica granatum HOM05D001765 ORTHO05D005876 1.0e-55 221.1 150 78.0
SEGI_21194 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 1.3e-55 220.7 145 81.4
SEGI_31674 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 1.3e-55 220.7 145 81.4
FAN07G0091 Fragaria x ananassa HOM05D001765 ORTHO05D005876 2.3e-55 219.9 153 79.7
Sc13g0006420 Simmondsia chinensis HOM05D001765 ORTHO05D005876 2.3e-55 219.9 151 80.8
Sabra08G0081000 Salix brachista HOM05D001765 ORTHO05D005876 3.0e-55 219.5 145 80.7
Glyma.07G241300 Glycine max HOM05D001765 ORTHO05D005876 3.9e-55 219.2 152 77.6
VMungo0647G0513 Vigna mungo HOM05D000091 ORTHO05D005533 6.6e-55 218.4 142 81.0
Manes.03G202700 Manihot esculenta HOM05D001765 ORTHO05D005876 8.6e-55 218.0 150 77.3
ClCG06G004640 Citrullus lanatus HOM05D001765 ORTHO05D005876 1.1e-54 217.6 146 80.8
Gorai.011G199400 Gossypium raimondii HOM05D001765 ORTHO05D005876 1.1e-54 217.6 146 82.2
THA.LOC104802705 Tarenaya hassleriana HOM05D001765 ORTHO05D005876 1.1e-54 217.6 157 76.4
Duzib151G0385 Durio zibethinus HOM05D001765 ORTHO05D005876 1.5e-54 217.2 147 81.0
Potri.010G142400 Populus trichocarpa HOM05D001765 ORTHO05D005876 2.5e-54 216.5 145 79.3
Aqoxy5G02976 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 3.3e-54 216.1 155 77.4
Glyma.17G032500 Glycine max HOM05D001765 ORTHO05D005876 4.3e-54 215.7 155 76.1
Gohir.A10G171300 Gossypium hirsutum HOM05D001765 ORTHO05D005876 4.3e-54 215.7 147 81.0
Ca_21450_v3 Cicer arietinum L. HOM05D001765 ORTHO05D005876 7.3e-54 214.9 154 76.6
COL.COLO4_34649 Corchorus olitorius HOM05D001765 ORTHO05D005123 7.3e-54 214.9 155 78.7
Lalb_Chr13g0298421 Lupinus albus HOM05D001765 ORTHO05D005876 9.5e-54 214.5 153 75.8
Gohir.D10G178400 Gossypium hirsutum HOM05D001765 ORTHO05D005876 2.1e-53 213.4 145 82.1
Sed0022335 Sechium edule HOM05D001765 ORTHO05D005876 2.8e-53 213.0 146 78.8
Sabra10G0110100 Salix brachista HOM05D001765 ORTHO05D005876 4.7e-53 212.2 145 78.6
Potri.008G107100 Populus trichocarpa HOM05D001765 ORTHO05D005876 8.0e-53 211.5 145 77.9
TPR.G16856 Trifolium pratense HOM05D001765 ORTHO05D005876 8.0e-53 211.5 143 78.3
VMungo1215G2482 Vigna mungo HOM05D001765 ORTHO05D005876 8.0e-53 211.5 141 78.7
PSO210G5285 Papaver somniferum HOM05D001765 ORTHO05D005876 1.1e-52 211.1 147 80.3
Phvul.008G245800 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 1.1e-52 211.1 144 78.5
Phvul.009G074533 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 1.1e-52 211.1 144 78.5
Lalb_Chr07g0182091 Lupinus albus HOM05D001765 ORTHO05D005876 1.4e-52 210.7 143 77.6
CDE01G0626 Ceratophyllum demersum HOM05D001765 ORTHO05D005876 2.3e-52 209.9 154 75.3
COL.COLO4_11257 Corchorus olitorius HOM05D001765 ORTHO05D005876 2.3e-52 209.9 154 78.6
CsaV3_2G015100 Cucumis sativus L. HOM05D001765 ORTHO05D005876 3.1e-52 209.5 135 85.2
MELO3C023334.2 Cucumis melo HOM05D001765 ORTHO05D005876 4.0e-52 209.1 134 85.1
THA.LOC104818892 Tarenaya hassleriana HOM05D001765 ORTHO05D005876 4.0e-52 209.1 153 75.8
arahy.Tifrunner.gnm1.ann1.03CYAA Arachis hypogaea HOM05D001765 ORTHO05D005876 6.8e-52 208.4 133 82.7
Aa31LG11G7990 Aethionema arabicum HOM05D001765 ORTHO05D005876 8.9e-52 208.0 155 74.8
Carub.0008s0928 Capsella rubella HOM05D001765 ORTHO05D005876 8.9e-52 208.0 151 78.1
Ciclev10016311m.g Citrus clementina HOM05D001765 ORTHO05D005876 8.9e-52 208.0 134 84.3
RcHm_v2.0_Chr4g0424571 Rosa chinensis HOM05D001765 ORTHO05D005876 1.2e-51 207.6 133 85.7
BolC7t44518H Brassica oleracea HOM05D001765 ORTHO05D005876 1.5e-51 207.2 158 74.7
Phvul.003G112500 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 2.6e-51 206.5 154 74.0
BcaC06g30699 Brassica carinata HOM05D001765 ORTHO05D005876 4.4e-51 205.7 141 80.9
A06p38370 Brassica napus HOM05D001765 ORTHO05D005876 4.4e-51 205.7 141 80.9
BraA06t26751Z Brassica rapa HOM05D001765 ORTHO05D005876 4.4e-51 205.7 141 80.9
AUR62004747 Chenopodium quinoa HOM05D001765 ORTHO05D005876 4.4e-51 205.7 137 83.9
Thhalv10004753m.g Eutrema salsugineum HOM05D001765 ORTHO05D005876 4.4e-51 205.7 137 83.2
PSO761G0153 Papaver somniferum HOM05D001765 ORTHO05D005876 4.4e-51 205.7 146 76.0
BcaNung02601 Brassica carinata HOM05D001765 ORTHO05D005876 7.5e-51 204.9 158 74.1
C07p39890 Brassica napus HOM05D001765 ORTHO05D005876 7.5e-51 204.9 158 74.1
AT5G49400 Arabidopsis thaliana HOM05D001765 ORTHO05D005876 9.8e-51 204.5 141 80.1
Sp2g19740 Schrenkiella parvula HOM05D001765 ORTHO05D005876 1.7e-50 203.8 140 81.4
SpUn0021_0110 Schrenkiella parvula HOM05D001765 ORTHO05D005876 1.7e-50 203.8 140 81.4
CARHR182130 Cardamine hirsuta HOM05D001765 ORTHO05D005876 2.2e-50 203.4 154 76.0
AL8G23110 Arabidopsis lyrata HOM05D001765 ORTHO05D005876 2.9e-50 203.0 141 80.9
BcaC03g17719 Brassica carinata HOM05D001765 ORTHO05D005876 1.1e-49 201.1 152 75.0
C02p57300 Brassica napus HOM05D001765 ORTHO05D003527 1.1e-49 201.1 152 75.0
BolC2t11799H Brassica oleracea HOM05D001765 ORTHO05D003527 1.1e-49 201.1 152 75.0
Zm00001eb109890 Zea mays HOM05D001765 ORTHO05D005876 1.4e-49 200.7 151 73.5
Zm00001eb328920 Zea mays HOM05D001765 ORTHO05D005876 1.9e-49 200.3 146 75.3
A02p38130 Brassica napus HOM05D001765 ORTHO05D003527 2.0e-48 196.8 140 77.1
Psat4g024600 Pisum sativum HOM05D001765 ORTHO05D005876 2.0e-48 196.8 136 77.2
Sed0021764 Sechium edule HOM05D001765 ORTHO05D005876 3.5e-48 196.1 131 81.7
Mapoly0023s0038 Marchantia polymorpha HOM05D001765 ORTHO05D005876 3.0e-47 193.0 135 80.7
Lj4g0023600 Lotus japonicus HOM05D001765 ORTHO05D005876 3.9e-47 192.6 136 77.9
Os11g0199600 Oryza sativa ssp. japonica HOM05D001765 ORTHO05D005876 3.9e-47 192.6 148 75.0
Pp3c14_13970 Physcomitrium patens HOM05D001765 ORTHO05D005876 3.9e-47 192.6 137 78.1
BraA02t08788Z Brassica rapa HOM05D001765 ORTHO05D005876 1.2e-45 187.6 157 70.7
Nitab4.5_0004323g0070 Nicotiana tabacum HOM05D001765 ORTHO05D005876 3.6e-45 186.0 114 87.7
AagrBONN_evm.TU.Sc2ySwM_362.810 Anthoceros agrestis HOM05D001765 ORTHO05D005876 1.8e-44 183.7 136 76.5
Manes.15G005450 Manihot esculenta HOM05D001765 ORTHO05D005876 1.5e-43 180.6 127 73.2
BcaB07g34154 Brassica carinata HOM05D001765 ORTHO05D005876 2.9e-42 176.4 134 74.6
Mapoly0171s0012 Marchantia polymorpha HOM05D001765 ORTHO05D005876 6.4e-42 175.3 140 69.3
Pp3c14_17690 Physcomitrium patens HOM05D001765 ORTHO05D005876 1.7e-39 167.2 127 71.7
AagrBONN_evm.TU.Sc2ySwM_228.5656 Anthoceros agrestis HOM05D001765 ORTHO05D005876 5.2e-36 155.6 121 75.2
MBI19_g17409_MAGBIO Magnolia biondii HOM05D001765 ORTHO05D005876 1.4e-33 147.5 155 61.3
CBR_g53494 Chara braunii HOM05D000188 ORTHO05D005876 7.1e-33 145.2 136 64.0
SMO340G0272 Selaginella moellendorffii HOM05D001765 ORTHO05D005876 4.6e-32 142.5 108 70.4
Zm00001eb091100 Zea mays HOM05D001765 ORTHO05D005876 1.7e-31 140.6 130 62.3
Zm00001eb276930 Zea mays HOM05D001765 ORTHO05D005876 8.7e-31 138.3 111 71.2
CAN.G201.7 Capsicum annuum HOM05D001765 ORTHO05D005876 5.8e-27 125.6 153 56.2
SEGI_08255 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 3.8e-26 122.9 99 67.7
HanXRQChr13g0395311 Helianthus annuus HOM05D001765 ORTHO05D005876 4.9e-26 122.5 141 52.5
GSVIVG01035017001 Vitis vinifera HOM05D001765 ORTHO05D005876 1.1e-25 121.3 85 84.7
Lsat_1_v5_gn_6_18261 Lactuca sativa HOM05D001765 ORTHO05D005876 7.1e-25 118.6 140 52.9
ATR1159G054 Amborella trichopoda HOM05D001765 ORTHO05D005876 7.8e-24 115.2 80 71.2
ECA233G0063 Erigeron canadensis HOM05D001765 ORTHO05D005876 2.5e-22 110.2 99 64.6
Zm00001eb408400 Zea mays HOM05D001765 ORTHO05D005876 1.1e-20 104.8 83 72.3
Medtr1g032030 Medicago truncatula HOM05D001765 ORTHO05D005876 1.7e-18 97.4 69 81.2
Medtr1g032370 Medicago truncatula HOM05D001765 ORTHO05D005876 1.7e-18 97.4 69 81.2
CAN.G197.3 Capsicum annuum HOM05D001765 ORTHO05D005876 6.4e-18 95.5 73 74.0
ATR1159G071 Amborella trichopoda HOM05D001765 ORTHO05D005876 1.1e-12 78.2 67 76.1
ATR1159G066 Amborella trichopoda HOM05D001765 ORTHO05D005876 9.0e-12 75.1 65 73.8
Dinv15195 Davidia involucrata HOM05D002174 ORTHO05D005447 1.1e-09 68.2 44 77.3
Cre12.g529200 Chlamydomonas reinhardtii HOM05D001765 ORTHO05D005876 9.3e-09 65.1 80 43.8


User provided reference genes

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