Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.2160 Avicennia marina HOM05D004292 ORTHO05D005206 4.2e-144 514.6 251 100.0
Nn3g18267 Nelumbo nucifera HOM05D004292 ORTHO05D005206 5.1e-113 411.4 249 77.9
Dinv07664 Davidia involucrata HOM05D004292 ORTHO05D005206 1.9e-112 409.5 249 77.9
SalBow2G3034 Salvia bowleyana HOM05D004292 ORTHO05D005206 4.3e-112 408.3 249 77.5
CSS0026867 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 3.6e-111 405.2 248 75.4
Actinidia36661 Actinidia chinensis HOM05D004292 ORTHO05D005206 4.7e-111 404.8 249 75.5
Peaxi162Scf00253g01121 Petunia axillaris HOM05D004292 ORTHO05D005206 4.7e-111 404.8 249 75.1
SGA_v2.0_scaffold234G43615 Striga asiatica HOM05D004292 ORTHO05D005206 8.1e-111 404.1 248 77.8
Hma1.2p1_0096F.1_g047700 Hydrangea macrophylla HOM05D004292 ORTHO05D005206 1.1e-110 403.7 248 76.2
Actinidia12367 Actinidia chinensis HOM05D004292 ORTHO05D005206 1.8e-110 402.9 249 75.5
Migut.E00438 Erythranthe guttata HOM05D004292 ORTHO05D005206 2.0e-109 399.4 249 77.5
PGSC0003DMG401005954 Solanum tuberosum HOM05D004292 ORTHO05D005206 2.0e-109 399.4 249 73.9
Sopen04g002820 Solanum pennellii HOM05D004292 ORTHO05D005206 2.6e-109 399.1 249 73.9
Lj3C871G6 Lonicera japonica HOM05D004292 ORTHO05D005206 9.9e-109 397.1 248 74.2
Solyc04g007730.3 Solanum lycopersicum HOM05D004292 ORTHO05D005206 1.3e-108 396.7 249 73.5
CAN.G150.4 Capsicum annuum HOM05D004292 ORTHO05D005206 2.9e-108 395.6 243 74.5
Prupe.1G326900 Prunus persica HOM05D004292 ORTHO05D005206 1.1e-107 393.7 249 75.9
Atru.chr11.473 Acer truncatum HOM05D004292 ORTHO05D005206 4.1e-107 391.7 249 74.3
TWI75G1503 Tripterygium wilfordii HOM05D004292 ORTHO05D005206 4.1e-107 391.7 249 74.7
Nitab4.5_0004230g0010 Nicotiana tabacum HOM05D004292 ORTHO05D005206 7.1e-107 391.0 249 73.1
Migut.L00354 Erythranthe guttata HOM05D004292 ORTHO05D005206 4.6e-106 388.3 251 73.3
Nn4g24213 Nelumbo nucifera HOM05D004292 ORTHO05D005206 6.0e-106 387.9 249 73.1
Eucgr.G02180 Eucalyptus grandis HOM05D004292 ORTHO05D005206 7.8e-106 387.5 249 73.1
GSVIVG01011737001 Vitis vinifera HOM05D004292 ORTHO05D005206 1.0e-105 387.1 249 74.3
Rhsim09G0096100 Rhododendron simsii HOM05D004292 ORTHO05D005206 1.7e-105 386.3 252 73.0
MD13G1023800 Malus domestica HOM05D004292 ORTHO05D005206 3.0e-105 385.6 250 74.8
Manes.15G129300 Manihot esculenta HOM05D004292 ORTHO05D005206 3.9e-105 385.2 249 70.7
CANSAT64G1906 Cannabis sativa HOM05D004292 ORTHO05D005206 5.1e-105 384.8 248 73.4
Manes.17G078500 Manihot esculenta HOM05D004292 ORTHO05D005206 6.6e-105 384.4 248 71.0
Potri.010G111300 Populus trichocarpa HOM05D004292 ORTHO05D005206 8.6e-105 384.0 249 73.1
Migut.L00977 Erythranthe guttata HOM05D004292 ORTHO05D005206 1.5e-104 383.3 250 73.2
Thecc.02G283600 Theobroma cacao HOM05D004292 ORTHO05D005206 1.5e-104 383.3 249 74.7
Duzib248G1431 Durio zibethinus HOM05D004292 ORTHO05D005206 1.2e-103 380.2 249 74.3
CSS0022047 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 1.6e-103 379.8 251 70.1
Medtr1g031620 Medicago truncatula HOM05D004292 ORTHO05D005206 2.1e-103 379.4 251 70.9
Peaxi162Scf00159g01025 Petunia axillaris HOM05D004292 ORTHO05D005206 2.1e-103 379.4 249 72.3
MD16G1026500 Malus domestica HOM05D004292 ORTHO05D005206 4.7e-103 378.3 250 71.6
TPR.G36967 Trifolium pratense HOM05D004292 ORTHO05D005206 4.7e-103 378.3 251 70.9
PGR119G0156 Punica granatum HOM05D004292 ORTHO05D005206 6.2e-103 377.9 250 73.2
Duzib251G0662 Durio zibethinus HOM05D004292 ORTHO05D005206 8.1e-103 377.5 250 74.0
THA.LOC104809176 Tarenaya hassleriana HOM05D004292 ORTHO05D005206 1.4e-102 376.7 248 71.0
RcHm_v2.0_Chr4g0441581 Rosa chinensis HOM05D004292 ORTHO05D005206 1.8e-102 376.3 249 73.1
TAR374G0923 Trochodendron aralioides HOM05D004292 ORTHO05D005206 3.1e-102 375.6 249 72.3
Gorai.002G178500 Gossypium raimondii HOM05D004292 ORTHO05D005206 4.0e-102 375.2 249 73.9
Gohir.D01G144600 Gossypium hirsutum HOM05D004292 ORTHO05D005206 5.2e-102 374.8 249 73.9
FAN07G2049 Fragaria x ananassa HOM05D004292 ORTHO05D005206 6.8e-102 374.4 249 73.1
Cfa008626 Carpinus fangiana HOM05D004292 ORTHO05D005206 8.9e-102 374.0 251 71.3
Lj2g0018897 Lotus japonicus HOM05D004292 ORTHO05D005206 1.2e-101 373.6 251 69.7
FAN22G2140 Fragaria x ananassa HOM05D004292 ORTHO05D005206 1.5e-101 373.2 249 73.1
Thhalv10019522m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 2.0e-101 372.9 249 70.7
CiPaw.06G047000 Carya illinoinensis HOM05D004292 ORTHO05D005206 5.8e-101 371.3 249 69.9
FAN17G0423 Fragaria x ananassa HOM05D004292 ORTHO05D005206 5.8e-101 371.3 249 72.3
BraA07t31292Z Brassica rapa HOM05D004292 ORTHO05D005206 7.6e-101 370.9 249 69.9
FvH4_4g32670 Fragaria vesca HOM05D004292 ORTHO05D005206 9.9e-101 370.5 249 72.3
FAN12G2104 Fragaria x ananassa HOM05D004292 ORTHO05D005206 9.9e-101 370.5 249 72.3
arahy.Tifrunner.gnm1.ann1.EY5UDZ Arachis hypogaea HOM05D004292 ORTHO05D005206 1.3e-100 370.2 251 69.3
Ciclev10016392m.g Citrus clementina HOM05D004292 ORTHO05D005206 1.7e-100 369.8 249 70.7
Thhalv10008584m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 1.7e-100 369.8 249 69.9
BcaB03g14853 Brassica carinata HOM05D004292 ORTHO05D005206 2.2e-100 369.4 248 70.6
PSO017G6162 Papaver somniferum HOM05D004292 ORTHO05D005206 2.2e-100 369.4 250 72.8
Sabra10G0081700 Salix brachista HOM05D004292 ORTHO05D005206 2.2e-100 369.4 249 70.7
Aa31LG7G7080 Aethionema arabicum HOM05D004292 ORTHO05D005206 2.9e-100 369.0 260 68.8
CARHR023490 Cardamine hirsuta HOM05D004292 ORTHO05D005206 2.9e-100 369.0 249 68.3
QL01p001285 Quercus lobata HOM05D004292 ORTHO05D005206 2.9e-100 369.0 249 70.7
Sp5g26070 Schrenkiella parvula HOM05D004292 ORTHO05D005206 3.8e-100 368.6 249 69.5
Aqoxy3G00082 Aquilegia oxysepala HOM05D004292 ORTHO05D005206 6.4e-100 367.9 239 73.2
A07p37330 Brassica napus HOM05D004292 ORTHO05D005206 6.4e-100 367.9 249 69.5
Sp1g20550 Schrenkiella parvula HOM05D004292 ORTHO05D005206 6.4e-100 367.9 249 69.5
Carub.0002s1769 Capsella rubella HOM05D004292 ORTHO05D005206 1.4e-99 366.7 249 68.7
Glyma.19G064200 Glycine max HOM05D004292 ORTHO05D005206 1.4e-99 366.7 251 69.3
Psat6g043600 Pisum sativum HOM05D004292 ORTHO05D005206 1.4e-99 366.7 242 70.7
Carub.0001s2263 Capsella rubella HOM05D004292 ORTHO05D005206 2.4e-99 365.9 249 69.9
Gohir.A05G309400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 3.2e-99 365.5 249 71.5
Gohir.D05G310300 Gossypium hirsutum HOM05D004292 ORTHO05D005206 3.2e-99 365.5 249 71.5
Phvul.003G031700 Phaseolus vulgaris HOM05D004292 ORTHO05D005206 3.2e-99 365.5 251 68.5
Haze_10980 Corylus avellana HOM05D004292 ORTHO05D005206 4.2e-99 365.2 250 70.0
PSO478G0265 Papaver somniferum HOM05D004292 ORTHO05D005206 4.2e-99 365.2 250 71.6
C06p45000 Brassica napus HOM05D004292 ORTHO05D005206 5.4e-99 364.8 249 69.1
BolC6t39558H Brassica oleracea HOM05D004292 ORTHO05D005206 5.4e-99 364.8 249 69.1
AL2G30410 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 1.2e-98 363.6 249 68.3
AT1G70900 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 1.2e-98 363.6 249 67.9
BcaC08g46539 Brassica carinata HOM05D004292 ORTHO05D005206 1.2e-98 363.6 249 68.7
VMungo1215G3121 Vigna mungo HOM05D004292 ORTHO05D005206 1.2e-98 363.6 251 68.5
Gorai.009G330900 Gossypium raimondii HOM05D004292 ORTHO05D005206 1.6e-98 363.2 249 71.1
ATR0564G234 Amborella trichopoda HOM05D004292 ORTHO05D005206 2.7e-98 362.5 250 68.8
CARHR064180 Cardamine hirsuta HOM05D004292 ORTHO05D005206 2.7e-98 362.5 249 67.1
AT1G23110 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 3.5e-98 362.1 249 69.1
AL1G36680 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 6.0e-98 361.3 240 70.4
Lalb_Chr17g0338501 Lupinus albus HOM05D004292 ORTHO05D005206 7.8e-98 360.9 251 69.3
Sc04g0005360 Simmondsia chinensis HOM05D004292 ORTHO05D005206 1.0e-97 360.5 251 67.7
COL.COLO4_13153 Corchorus olitorius HOM05D004292 ORTHO05D005206 1.3e-97 360.1 249 70.7
Potri.008G130700 Populus trichocarpa HOM05D004292 ORTHO05D005206 1.7e-97 359.8 249 68.7
Rhsim09G0095100 Rhododendron simsii HOM05D004292 ORTHO05D005206 3.0e-97 359.0 250 70.0
SalBow8G2865 Salvia bowleyana HOM05D004292 ORTHO05D005206 3.9e-97 358.6 242 70.7
SalBow8G2030 Salvia bowleyana HOM05D004292 ORTHO05D005206 1.1e-96 357.1 242 70.7
arahy.Tifrunner.gnm1.ann1.A6Q8V1 Arachis hypogaea HOM05D004292 ORTHO05D005206 2.5e-96 355.9 251 67.7
BcaB03g14168 Brassica carinata HOM05D004292 ORTHO05D005206 9.6e-96 354.0 249 68.3
MBI19_g22783_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 6.2e-95 351.3 286 61.5
HanXRQChr08g0212101 Helianthus annuus HOM05D004292 ORTHO05D005206 4.0e-94 348.6 242 67.8
CsaV3_5G028400 Cucumis sativus L. HOM05D004292 ORTHO05D005206 5.3e-94 348.2 240 67.9
HanXRQChr12g0364371 Helianthus annuus HOM05D004292 ORTHO05D005206 6.9e-94 347.8 252 67.1
A07p14020 Brassica napus HOM05D004292 ORTHO05D005206 1.2e-93 347.1 243 68.7
BraA07t29156Z Brassica rapa HOM05D004292 ORTHO05D005206 1.2e-93 347.1 243 68.7
BcaC06g35023 Brassica carinata HOM05D004292 ORTHO05D005206 1.5e-93 346.7 273 63.0
C07p20600 Brassica napus HOM05D004292 ORTHO05D005206 1.5e-93 346.7 273 63.0
ClCG01G006270 Citrullus lanatus HOM05D004292 ORTHO05D005206 3.4e-93 345.5 240 67.5
BolC7t42590H Brassica oleracea HOM05D004292 ORTHO05D005206 5.8e-93 344.7 243 67.9
MELO3C005303.2 Cucumis melo HOM05D004292 ORTHO05D005206 2.9e-92 342.4 240 67.1
Nitab4.5_0000426g0230 Nicotiana tabacum HOM05D004292 ORTHO05D005206 2.9e-92 342.4 249 66.7
Sed0011413 Sechium edule HOM05D004292 ORTHO05D005206 4.9e-92 341.7 240 69.2
ECA233G2687 Erigeron canadensis HOM05D004292 ORTHO05D005206 8.4e-92 340.9 251 65.3
TAR622G0066 Trochodendron aralioides HOM05D004292 ORTHO05D005206 8.4e-92 340.9 225 71.1
Hund10268 Selenicereus undatus HOM05D004292 ORTHO05D005206 9.3e-91 337.4 252 65.5
Lsat_1_v5_gn_8_44580 Lactuca sativa HOM05D004292 ORTHO05D005206 3.5e-90 335.5 252 64.7
AUR62014183 Chenopodium quinoa HOM05D004292 ORTHO05D005206 1.0e-89 334.0 249 63.9
Dinv14417 Davidia involucrata HOM05D004292 ORTHO05D005206 2.3e-89 332.8 183 85.8
HPP92_009641 Vanilla planifolia HOM05D004292 ORTHO05D005206 1.1e-88 330.5 244 64.8
Os08g0433200 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 1.5e-88 330.1 243 64.2
DCAR_023592 Daucus carota HOM05D004292 ORTHO05D005206 5.6e-88 328.2 249 65.1
Aa31LG4G10150 Aethionema arabicum HOM05D004292 ORTHO05D005206 7.3e-88 327.8 291 57.0
CDE05G3602 Ceratophyllum demersum HOM05D004292 ORTHO05D005206 3.6e-87 325.5 234 67.5
Zm00001eb041560 Zea mays HOM05D004292 ORTHO05D005206 2.6e-85 319.3 248 62.9
Zm00001eb099420 Zea mays HOM05D004292 ORTHO05D005206 2.2e-84 316.2 247 63.2
Oeu018604.1 Olea europaea HOM05D004292 ORTHO05D005206 3.8e-84 315.5 173 86.1
Ca_12594_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 8.4e-84 314.3 249 61.4
Cpa.g.c36802 Carica papaya HOM05D004292 ORTHO05D005206 1.9e-83 313.2 201 74.1
MBI12_g36036_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 5.3e-78 295.0 242 61.2
Lj6C744T5 Lonicera japonica HOM05D004292 ORTHO05D005206 1.1e-75 287.3 249 60.6
DCAR_030229 Daucus carota HOM05D004292 ORTHO05D005206 1.9e-75 286.6 250 59.2
Ah.03g137320 Amaranthus hybridus HOM05D004292 ORTHO05D001279 7.1e-75 284.6 174 76.4
Cc11_g08440 Coffea canephora HOM05D004292 ORTHO05D005206 7.6e-69 264.6 186 69.4
vmacro10650 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 1.9e-67 260.0 147 83.7
vmacro10653 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 1.9e-67 260.0 147 83.7
Gohir.A01G151400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 1.6e-66 256.9 181 71.3
Ca_12581_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 6.1e-66 255.0 152 77.6
Mapoly0185s0002 Marchantia polymorpha HOM05D004292 ORTHO05D005206 1.3e-65 253.8 195 57.9
unitig_699.g19535 Utricularia gibba HOM05D004292 ORTHO05D005206 6.7e-57 224.9 193 60.1
Pp3c24_11420 Physcomitrium patens HOM05D004292 ORTHO05D005206 9.1e-54 214.5 180 57.8
SMO111G0032 Selaginella moellendorffii HOM05D004292 ORTHO05D005206 3.8e-52 209.1 174 60.9
C06p45020 Brassica napus HOM05D004292 ORTHO05D005206 2.2e-47 193.4 189 55.0
BolC6t39560H Brassica oleracea HOM05D004292 ORTHO05D005206 2.2e-47 193.4 189 55.0
Pp3c7_7180 Physcomitrium patens HOM05D004292 ORTHO05D005206 6.1e-42 175.3 157 51.6
CDE05G3401 Ceratophyllum demersum HOM05D001044 ORTHO05D004551 8.8e-41 171.4 110 73.6
AagrBONN_evm.TU.Sc2ySwM_368.1350 Anthoceros agrestis HOM05D004292 ORTHO05D005206 3.5e-37 159.5 132 56.8
AL337U10010 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 1.0e-36 157.9 87 81.6
GSVIVG01038114001 Vitis vinifera HOM05D000242 ORTHO05D000631 4.1e-30 136.0 75 86.7
Cc11_g08450 Coffea canephora HOM05D004292 ORTHO05D005206 5.0e-28 129.0 67 86.6
MD06G1224600 Malus domestica HOM05D004292 ORTHO05D005206 2.3e-25 120.2 75 74.7
Cre03.g173550 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 5.7e-24 115.5 174 36.8
Cc07_g18460 Coffea canephora HOM05D004292 ORTHO05D005206 1.1e-22 111.3 75 76.0
C02p28370 Brassica napus HOM05D004292 ORTHO05D005206 2.7e-21 106.7 99 54.5
BolC2t08881H Brassica oleracea HOM05D004292 ORTHO05D005206 2.7e-21 106.7 99 54.5
PRCOL_00000603 Prasinoderma coloniale HOM05D004292 ORTHO05D005206 2.3e-20 103.6 168 36.3
DCAR_000574 Daucus carota HOM05D004292 ORTHO05D005206 3.8e-20 102.8 107 56.1
DCAR_009985 Daucus carota HOM05D004292 ORTHO05D005206 1.2e-13 81.3 93 51.6
DCAR_009878 Daucus carota HOM05D004292 ORTHO05D005206 3.5e-13 79.7 83 55.4
arahy.Tifrunner.gnm1.ann1.B49LBP Arachis hypogaea HOM05D004292 ORTHO05D005206 4.3e-11 72.8 52 63.5
arahy.Tifrunner.gnm1.ann1.06RDDY Arachis hypogaea HOM05D004292 ORTHO05D005206 2.0e-08 63.9 54 61.1
MCO07G095 Micromonas commoda HOM05D004292 ORTHO05D005206 5.8e-08 62.4 165 29.1
Os09g0411500 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 2.9e-07 60.1 46 56.5
arahy.Tifrunner.gnm1.ann1.A5SBZK Arachis hypogaea HOM05D004292 ORTHO05D005206 8.3e-07 58.5 65 46.2
Lj4g0003601 Lotus japonicus HOM05D000353 ORTHO05D000174 2.4e-06 57.0 38 68.4
PRCOL_00001474 Prasinoderma coloniale HOM05D004292 ORTHO05D005206 4.1e-06 56.2 201 24.4
BcaC05g26219 Brassica carinata HOM05D004292 ORTHO05D005206 7.0e-06 55.5 34 70.6


User provided reference genes

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