Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.21564 Avicennia marina HOM05D001128 ORTHO05D000721 9.5e-80 300.1 146 100.0
Migut.D00291 Erythranthe guttata HOM05D001128 ORTHO05D000721 9.7e-32 140.6 151 58.3
SalBow4G1333 Salvia bowleyana HOM05D001128 ORTHO05D000721 8.8e-25 117.5 150 48.7
Thecc.01G280100 Theobroma cacao HOM05D001128 ORTHO05D000721 1.3e-20 103.6 90 62.2
GSVIVG01011088001 Vitis vinifera HOM05D001128 ORTHO05D000721 2.2e-20 102.8 122 53.3
Manes.05G075700 Manihot esculenta HOM05D001128 ORTHO05D000721 3.8e-20 102.1 90 61.1
COL.COLO4_09103 Corchorus olitorius HOM05D005331 ORTHO05D007596 1.1e-19 100.5 134 45.5
SGA_v2.0_scaffold1G00467 Striga asiatica HOM05D001128 ORTHO05D000721 1.4e-19 100.1 119 52.1
Dinv32942 Davidia involucrata HOM05D001128 ORTHO05D000721 1.9e-19 99.8 90 63.3
Sabra05G0158900 Salix brachista HOM05D001128 ORTHO05D000721 1.9e-19 99.8 90 61.1
Oeu028076.1 Olea europaea HOM05D001128 ORTHO05D000721 2.5e-19 99.4 128 51.6
Oeu028077.1 Olea europaea HOM05D001128 ORTHO05D000721 2.5e-19 99.4 128 51.6
HanXRQChr01g0003181 Helianthus annuus HOM05D001128 ORTHO05D000721 1.2e-18 97.1 100 52.0
Potri.005G208800 Populus trichocarpa HOM05D001128 ORTHO05D000721 1.6e-18 96.7 84 61.9
MD11G1286400 Malus domestica HOM05D001128 ORTHO05D000721 2.1e-18 96.3 83 63.9
QL12p021963 Quercus lobata HOM05D001128 ORTHO05D000721 2.7e-18 95.9 77 70.1
Peaxi162Scf01622g00014 Petunia axillaris HOM05D001128 ORTHO05D000721 4.7e-18 95.1 74 68.9
Sc17g0004110 Simmondsia chinensis HOM05D001128 ORTHO05D000721 4.7e-18 95.1 84 65.5
Gorai.004G080700 Gossypium raimondii HOM05D001128 ORTHO05D000721 8.0e-18 94.4 65 75.4
Atru.chr5.1430 Acer truncatum HOM05D001128 ORTHO05D000721 1.8e-17 93.2 74 66.2
Duzib211G0347 Durio zibethinus HOM05D001128 ORTHO05D000721 2.3e-17 92.8 82 62.2
Lsat_1_v5_gn_5_188320 Lactuca sativa HOM05D001128 ORTHO05D000721 2.3e-17 92.8 76 63.2
MD03G1266000 Malus domestica HOM05D001128 ORTHO05D000721 2.3e-17 92.8 83 60.2
Ciclev10023667m.g Citrus clementina HOM05D001128 ORTHO05D000721 6.7e-17 91.3 67 71.6
Duzib138G1095 Durio zibethinus HOM05D001128 ORTHO05D000721 6.7e-17 91.3 82 65.9
Manes.01G208200 Manihot esculenta HOM05D001128 ORTHO05D000721 6.7e-17 91.3 83 63.9
Prupe.8G241700 Prunus persica HOM05D001128 ORTHO05D000721 8.8e-17 90.9 76 64.5
Actinidia21110 Actinidia chinensis HOM05D001128 ORTHO05D000721 1.1e-16 90.5 70 70.0
Rhsim01G0275000 Rhododendron simsii HOM05D005331 ORTHO05D007596 1.5e-16 90.1 68 72.1
Glyma.19G155600 Glycine max HOM05D001128 ORTHO05D000721 2.0e-16 89.7 84 57.1
Potri.002G053700 Populus trichocarpa HOM05D001128 ORTHO05D000721 2.6e-16 89.4 89 58.4
TAR633G0329 Trochodendron aralioides HOM05D001128 ORTHO05D000721 3.3e-16 89.0 82 64.6
Glyma.03G153200 Glycine max HOM05D001128 ORTHO05D000721 4.4e-16 88.6 64 70.3
Nn4g26238 Nelumbo nucifera HOM05D001128 ORTHO05D000721 4.4e-16 88.6 65 75.4
Lj1g0006514 Lotus japonicus HOM05D001128 ORTHO05D000721 5.7e-16 88.2 80 62.5
Gohir.D08G076400 Gossypium hirsutum HOM05D001128 ORTHO05D000721 7.4e-16 87.8 64 71.9
Phvul.001G150600 Phaseolus vulgaris HOM05D001128 ORTHO05D000721 1.7e-15 86.7 85 56.5
arahy.Tifrunner.gnm1.ann1.S3CEFB Arachis hypogaea HOM05D001128 ORTHO05D000721 2.8e-15 85.9 92 54.3
CiPaw.08G105000 Carya illinoinensis HOM05D001128 ORTHO05D000721 3.7e-15 85.5 100 56.0
VMungo0720G0300 Vigna mungo HOM05D001128 ORTHO05D000721 3.7e-15 85.5 66 68.2
Aqoxy2G03314 Aquilegia oxysepala HOM05D001128 ORTHO05D000721 4.8e-15 85.1 84 57.1
Cpa.g.sc52.31 Carica papaya HOM05D001128 ORTHO05D000721 4.8e-15 85.1 71 66.2
Gohir.A08G067900 Gossypium hirsutum HOM05D001128 ORTHO05D000721 4.8e-15 85.1 64 70.3
Nn1g02211 Nelumbo nucifera HOM05D001128 ORTHO05D000721 4.8e-15 85.1 75 66.7
Glyma.02G147700 Glycine max HOM05D001128 ORTHO05D000721 8.2e-15 84.3 89 57.3
RcHm_v2.0_Chr6g0291121 Rosa chinensis HOM05D001128 ORTHO05D000721 1.8e-14 83.2 87 56.3
SGA_v2.0_scaffold11G05806 Striga asiatica HOM05D009523 ORTHO05D000721 1.8e-14 83.2 172 37.8
Phvul.007G171600 Phaseolus vulgaris HOM05D001128 ORTHO05D000721 3.1e-14 82.4 66 68.2
FAN20G0154 Fragaria x ananassa HOM05D001128 ORTHO05D000721 4.1e-14 82.0 75 61.3
QL12p021827 Quercus lobata HOM05D001128 ORTHO05D000721 5.3e-14 81.6 76 64.5
Hund05343 Selenicereus undatus HOM05D001128 ORTHO05D000721 5.3e-14 81.6 100 54.0
Actinidia24889 Actinidia chinensis HOM05D000300 ORTHO05D000383 9.1e-14 80.9 63 73.0
Glyma.10G026100 Glycine max HOM05D001128 ORTHO05D000721 1.6e-13 80.1 108 49.1
PSO541G6419 Papaver somniferum HOM05D001128 ORTHO05D000721 1.6e-13 80.1 59 71.2
PSO675G1334 Papaver somniferum HOM05D001128 ORTHO05D000721 1.6e-13 80.1 59 71.2
Sabra02G0043700 Salix brachista HOM05D001128 ORTHO05D000721 2.6e-13 79.3 102 47.1
FvH4_2g23650 Fragaria vesca HOM05D001128 ORTHO05D000721 4.5e-13 78.6 74 60.8
FAN15G2738 Fragaria x ananassa HOM05D001128 ORTHO05D000721 4.5e-13 78.6 74 60.8
FAN24G2693 Fragaria x ananassa HOM05D001128 ORTHO05D000721 4.5e-13 78.6 74 60.8
FAN27G0408 Fragaria x ananassa HOM05D001128 ORTHO05D000721 4.5e-13 78.6 74 60.8
ClCG09G006980 Citrullus lanatus HOM05D001128 ORTHO05D000721 5.9e-13 78.2 68 63.2
Eucgr.K03372 Eucalyptus grandis HOM05D001128 ORTHO05D000721 5.9e-13 78.2 142 43.7
Sed0019989 Sechium edule HOM05D001128 ORTHO05D000721 5.9e-13 78.2 129 43.4
Lalb_Chr06g0163041 Lupinus albus HOM05D001128 ORTHO05D000721 1.0e-12 77.4 87 54.0
Gohir.A08G185900 Gossypium hirsutum HOM05D009523 ORTHO05D000721 1.7e-12 76.6 95 49.5
MELO3C015842.2 Cucumis melo HOM05D001128 ORTHO05D000721 2.2e-12 76.3 112 47.3
THA.LOC104825998 Tarenaya hassleriana HOM05D009523 ORTHO05D000721 2.2e-12 76.3 76 53.9
Gohir.D08G204000 Gossypium hirsutum HOM05D009523 ORTHO05D000721 3.8e-12 75.5 135 39.3
Haze_04722 Corylus avellana HOM05D001128 ORTHO05D000721 5.0e-12 75.1 60 70.0
Gorai.004G216000 Gossypium raimondii HOM05D009523 ORTHO05D000721 6.5e-12 74.7 135 40.0
CsaV3_7G028180 Cucumis sativus L. HOM05D001128 ORTHO05D000721 1.1e-11 73.9 71 62.0
Medtr1g072310 Medicago truncatula HOM05D001128 ORTHO05D000721 1.1e-11 73.9 62 66.1
PGR044G1404 Punica granatum HOM05D001128 ORTHO05D000721 1.1e-11 73.9 68 63.2
Sed0023317 Sechium edule HOM05D001128 ORTHO05D000721 1.5e-11 73.6 115 46.1
CANSAT25G3618 Cannabis sativa HOM05D001128 ORTHO05D000721 4.2e-11 72.0 76 59.2
TPR.G9121 Trifolium pratense HOM05D001128 ORTHO05D000721 4.2e-11 72.0 82 54.9
Psat6g060440 Pisum sativum HOM05D001128 ORTHO05D000721 7.2e-11 71.2 82 54.9
TAR623G0478 Trochodendron aralioides HOM05D001128 ORTHO05D000721 1.2e-10 70.5 65 64.6
MBI14_g02856_MAGBIO Magnolia biondii HOM05D001128 ORTHO05D000721 2.1e-10 69.7 62 64.5
Manes.09G099100 Manihot esculenta HOM05D001128 ORTHO05D000721 2.7e-10 69.3 64 60.9
SEGI_15940 Sequoiadendron giganteum HOM05D001128 ORTHO05D000721 4.7e-10 68.6 66 59.1
Duzib093G0147 Durio zibethinus HOM05D001128 ORTHO05D000721 6.1e-10 68.2 80 55.0
TAR369G0849 Trochodendron aralioides HOM05D001128 ORTHO05D000721 6.1e-10 68.2 105 46.7
TAR633G0212 Trochodendron aralioides HOM05D001128 ORTHO05D000721 6.1e-10 68.2 62 64.5
TAR636G2726 Trochodendron aralioides HOM05D001128 ORTHO05D000721 6.1e-10 68.2 64 64.1
MBI05_g02674_MAGBIO Magnolia biondii HOM05D001128 ORTHO05D000721 8.0e-10 67.8 62 64.5
Potri.006G093000 Populus trichocarpa HOM05D001128 ORTHO05D000721 1.4e-09 67.0 77 53.2
PGR119G0644 Punica granatum HOM05D001128 ORTHO05D000721 1.4e-09 67.0 103 42.7
BcaB05g23666 Brassica carinata HOM05D009523 ORTHO05D000721 1.8e-09 66.6 75 57.3
Gohir.A11G328200 Gossypium hirsutum HOM05D001128 ORTHO05D000721 1.8e-09 66.6 62 64.5
Thecc.05G027900 Theobroma cacao HOM05D001128 ORTHO05D000721 1.8e-09 66.6 80 53.8
Cpa.g.sc56.66 Carica papaya HOM05D001128 ORTHO05D000721 4.0e-09 65.5 78 53.8
ATR0210G013 Amborella trichopoda HOM05D001128 ORTHO05D000721 5.2e-09 65.1 62 61.3
Gohir.D04G126000 Gossypium hirsutum HOM05D001128 ORTHO05D000721 5.2e-09 65.1 129 39.5
Gorai.007G377500 Gossypium raimondii HOM05D001128 ORTHO05D000721 5.2e-09 65.1 62 62.9
Gorai.012G109000 Gossypium raimondii HOM05D001128 ORTHO05D000721 5.2e-09 65.1 129 39.5
Duzib128G0075 Durio zibethinus HOM05D001128 ORTHO05D000721 8.8e-09 64.3 63 57.1
SEGI_27945 Sequoiadendron giganteum HOM05D001128 ORTHO05D000721 8.8e-09 64.3 91 50.5
CsaV3_4G025740 Cucumis sativus L. HOM05D001128 ORTHO05D000721 1.2e-08 63.9 75 52.0
Thhalv10029004m.g Eutrema salsugineum HOM05D009523 ORTHO05D000721 1.2e-08 63.9 75 56.0
Mapoly0094s0056 Marchantia polymorpha HOM05D001128 ORTHO05D000721 1.2e-08 63.9 63 58.7
PSO339G4622 Papaver somniferum HOM05D001128 ORTHO05D000721 1.2e-08 63.9 66 57.6
PSO384G2375 Papaver somniferum HOM05D001128 ORTHO05D000721 1.2e-08 63.9 66 57.6
Haze_20899 Corylus avellana HOM05D001128 ORTHO05D000721 1.5e-08 63.5 61 60.7
Sed0025256 Sechium edule HOM05D001128 ORTHO05D000721 1.5e-08 63.5 62 59.7
Nn1g00216 Nelumbo nucifera HOM05D001128 ORTHO05D000721 2.0e-08 63.2 59 61.0
Gohir.D11G347100 Gossypium hirsutum HOM05D001128 ORTHO05D000721 2.6e-08 62.8 62 61.3
Os01g0850000 Oryza sativa ssp. japonica HOM05D001128 ORTHO05D000721 2.6e-08 62.8 65 58.5
GSVIVG01016431001 Vitis vinifera HOM05D001128 ORTHO05D000721 2.6e-08 62.8 60 61.7
Zm00001eb147910 Zea mays HOM05D001128 ORTHO05D000721 3.3e-08 62.4 69 53.6
Aqoxy1G00786 Aquilegia oxysepala HOM05D001128 ORTHO05D000721 4.4e-08 62.0 62 61.3
A02p25000 Brassica napus HOM05D009523 ORTHO05D000721 4.4e-08 62.0 71 57.7
Sp6g02860 Schrenkiella parvula HOM05D009523 ORTHO05D000721 4.4e-08 62.0 73 54.8
C02p39580 Brassica napus HOM05D009523 ORTHO05D000721 5.7e-08 61.6 71 57.7
BraA02t07489Z Brassica rapa HOM05D009523 ORTHO05D000721 5.7e-08 61.6 71 57.7
COL.COLO4_14683 Corchorus olitorius HOM05D001128 ORTHO05D000721 5.7e-08 61.6 64 59.4
Duzib106G0325 Durio zibethinus HOM05D001128 ORTHO05D000721 5.7e-08 61.6 77 50.6
Nn2g13535 Nelumbo nucifera HOM05D001128 ORTHO05D000721 5.7e-08 61.6 78 56.4
Psat0s1845g0240 Pisum sativum HOM05D001128 ORTHO05D000721 5.7e-08 61.6 143 35.0
Cfa017294 Carpinus fangiana HOM05D001128 ORTHO05D000721 7.5e-08 61.2 61 59.0
CiPaw.09G202700 Carya illinoinensis HOM05D001128 ORTHO05D000721 7.5e-08 61.2 123 43.1
Gorai.006G178800 Gossypium raimondii HOM05D001128 ORTHO05D000721 7.5e-08 61.2 80 50.0
Aa31LG5G2410 Aethionema arabicum HOM05D009523 ORTHO05D000721 9.7e-08 60.8 72 54.2
Gohir.A09G161600 Gossypium hirsutum HOM05D001128 ORTHO05D000721 9.7e-08 60.8 64 56.2
Sabra06G0070700 Salix brachista HOM05D001128 ORTHO05D000721 9.7e-08 60.8 78 48.7
Zm00001eb367680 Zea mays HOM05D001128 ORTHO05D000721 9.7e-08 60.8 65 55.4
Gohir.D09G157200 Gossypium hirsutum HOM05D001128 ORTHO05D000721 1.3e-07 60.5 80 50.0
vmacro20201 Vaccinium macrocarpon HOM05D001128 ORTHO05D000721 1.3e-07 60.5 77 48.1
Atru.chr8.2106 Acer truncatum HOM05D001128 ORTHO05D000721 1.7e-07 60.1 62 58.1
Carub.0006s3422 Capsella rubella HOM05D009523 ORTHO05D000721 1.7e-07 60.1 75 53.3
Gohir.A04G086100 Gossypium hirsutum HOM05D001128 ORTHO05D000721 1.7e-07 60.1 129 37.2
arahy.Tifrunner.gnm1.ann1.463IUL Arachis hypogaea HOM05D001128 ORTHO05D000721 2.2e-07 59.7 133 36.8
Nn2g11296 Nelumbo nucifera HOM05D001128 ORTHO05D000721 2.2e-07 59.7 62 58.1
CANSAT35G1304 Cannabis sativa HOM05D001128 ORTHO05D000721 2.8e-07 59.3 61 57.4
Dinv37107 Davidia involucrata HOM05D001128 ORTHO05D000721 2.8e-07 59.3 125 39.2
Glyma.07G141000 Glycine max HOM05D001128 ORTHO05D000721 2.8e-07 59.3 60 56.7
Lj3C959G13 Lonicera japonica HOM05D001128 ORTHO05D000721 2.8e-07 59.3 86 46.5
Phvul.008G113400 Phaseolus vulgaris HOM05D001128 ORTHO05D000721 2.8e-07 59.3 61 59.0
Rhsim05G0200600 Rhododendron simsii HOM05D001128 ORTHO05D000721 2.8e-07 59.3 72 50.0
Peaxi162Scf00132g00911 Petunia axillaris HOM05D001128 ORTHO05D000721 3.7e-07 58.9 72 48.6
MELO3C003199.2 Cucumis melo HOM05D001128 ORTHO05D000721 4.8e-07 58.5 68 52.9
VMungo1383G1773 Vigna mungo HOM05D001128 ORTHO05D000721 4.8e-07 58.5 126 41.3
BcaC03g16182 Brassica carinata HOM05D009523 ORTHO05D000721 6.3e-07 58.2 71 54.9
BolC2t09971H Brassica oleracea HOM05D009523 ORTHO05D000721 6.3e-07 58.2 71 54.9
PGSC0003DMG400011730 Solanum tuberosum HOM05D001128 ORTHO05D000721 6.3e-07 58.2 73 47.9
AL6G50100 Arabidopsis lyrata HOM05D009523 ORTHO05D000721 8.2e-07 57.8 76 51.3
Nitab4.5_0003264g0030 Nicotiana tabacum HOM05D001128 ORTHO05D000721 8.2e-07 57.8 72 48.6
Aa31LG10G8860 Aethionema arabicum HOM05D001128 ORTHO05D000721 1.1e-06 57.4 130 37.7
AT4G02830 Arabidopsis thaliana HOM05D009523 ORTHO05D000721 1.1e-06 57.4 75 50.7
arahy.Tifrunner.gnm1.ann1.KBQI3L Arachis hypogaea HOM05D001128 ORTHO05D000721 1.1e-06 57.4 133 36.1
MD12G1155400 Malus domestica HOM05D001128 ORTHO05D000721 1.1e-06 57.4 75 46.7
Potri.016G105000 Populus trichocarpa HOM05D001128 ORTHO05D000721 1.1e-06 57.4 65 55.4
Sabra16G0104100 Salix brachista HOM05D001128 ORTHO05D000721 1.1e-06 57.4 83 49.4
Actinidia13814 Actinidia chinensis HOM05D001128 ORTHO05D000721 1.4e-06 57.0 74 48.6
Actinidia29161 Actinidia chinensis HOM05D001128 ORTHO05D000721 1.4e-06 57.0 77 48.1
PGR004G1424 Punica granatum HOM05D001128 ORTHO05D000721 1.4e-06 57.0 138 34.1
Cpa.g.sc81.51 Carica papaya HOM05D001128 ORTHO05D000721 1.8e-06 56.6 58 53.4
Eucgr.B02733 Eucalyptus grandis HOM05D001128 ORTHO05D000721 1.8e-06 56.6 58 55.2
Nitab4.5_0000008g0230 Nicotiana tabacum HOM05D001128 ORTHO05D000721 1.8e-06 56.6 73 47.9
TWI74G1371 Tripterygium wilfordii HOM05D001128 ORTHO05D000721 1.8e-06 56.6 62 54.8
TWI77G0372 Tripterygium wilfordii HOM05D001128 ORTHO05D000721 1.8e-06 56.6 63 54.0
GSVIVG01034054001 Vitis vinifera HOM05D001128 ORTHO05D000721 1.8e-06 56.6 65 52.3
CARHR163900 Cardamine hirsuta HOM05D001128 ORTHO05D000721 2.4e-06 56.2 56 55.4
DCAR_028803 Daucus carota HOM05D001128 ORTHO05D000721 2.4e-06 56.2 71 50.7
Manes.01G167300 Manihot esculenta HOM05D001128 ORTHO05D000721 2.4e-06 56.2 79 48.1
SalBow1G2079 Salvia bowleyana HOM05D001128 ORTHO05D000721 2.4e-06 56.2 65 53.8
EL10Ac2g04665 Beta vulgaris HOM05D001128 ORTHO05D000721 3.1e-06 55.8 82 47.6
Glyma.18G191000 Glycine max HOM05D001128 ORTHO05D000721 3.1e-06 55.8 60 55.0
Manes.10G020800 Manihot esculenta HOM05D001128 ORTHO05D000721 3.1e-06 55.8 63 52.4
CiPaw.10G150200 Carya illinoinensis HOM05D001128 ORTHO05D000721 4.1e-06 55.5 61 54.1
Nn3g17868 Nelumbo nucifera HOM05D001128 ORTHO05D000721 4.1e-06 55.5 59 54.2
Prupe.6G067000 Prunus persica HOM05D001128 ORTHO05D000721 4.1e-06 55.5 70 50.0
Solyc09g011690.4 Solanum lycopersicum HOM05D001128 ORTHO05D000721 4.1e-06 55.5 107 40.2
Oeu013161.1 Olea europaea HOM05D001128 ORTHO05D000721 5.3e-06 55.1 64 50.0
SMO171G0071 Selaginella moellendorffii HOM05D001128 ORTHO05D000721 5.3e-06 55.1 70 51.4
SMO353G0321 Selaginella moellendorffii HOM05D001128 ORTHO05D000721 5.3e-06 55.1 70 51.4
HPP92_026966 Vanilla planifolia HOM05D001128 ORTHO05D000721 5.3e-06 55.1 58 55.2
Duzib114G0703 Durio zibethinus HOM05D001128 ORTHO05D000721 7.0e-06 54.7 121 39.7
Peaxi162Scf00014g01511 Petunia axillaris HOM05D001128 ORTHO05D000721 7.0e-06 54.7 62 56.5
Ca_07581_v3 Cicer arietinum L. HOM05D001128 ORTHO05D000721 9.1e-06 54.3 60 55.0
Ciclev10011799m.g Citrus clementina HOM05D001128 ORTHO05D000721 9.1e-06 54.3 63 55.6
Nn1g00331 Nelumbo nucifera HOM05D001128 ORTHO05D000721 9.1e-06 54.3 59 57.6


User provided reference genes

Program Settings