Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.21553 Avicennia marina HOM05D003848 ORTHO05D004616 5.0e-228 794.7 595 100.0
SGA_v2.0_scaffold1G00491 Striga asiatica HOM05D003848 ORTHO05D004616 1.0e-111 408.3 556 65.6
Migut.D00312 Erythranthe guttata HOM05D003848 ORTHO05D004616 1.6e-104 384.4 582 61.9
Oeu041715.2 Olea europaea HOM05D003848 ORTHO05D004616 3.5e-104 383.3 578 57.8
unitig_0.g1040 Utricularia gibba HOM05D003848 ORTHO05D004616 6.4e-98 362.5 488 58.4
Sopen11g029330 Solanum pennellii HOM05D003848 ORTHO05D004616 2.7e-88 330.5 568 59.7
PGSC0003DMG400046756 Solanum tuberosum HOM05D003848 ORTHO05D004616 3.0e-87 327.0 572 60.5
Cc01_g10690 Coffea canephora HOM05D003848 ORTHO05D004616 3.3e-86 323.6 594 59.4
Solyc11g071660.1 Solanum lycopersicum HOM05D003848 ORTHO05D004616 4.3e-86 323.2 568 58.8
Nitab4.5_0005156g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 8.1e-85 318.9 464 59.9
Cc00_g04130 Coffea canephora HOM05D003848 ORTHO05D004616 5.2e-84 316.2 490 56.5
CAN.G439.4 Capsicum annuum HOM05D003848 ORTHO05D004616 2.6e-83 313.9 556 52.3
CiPaw.08G106300 Carya illinoinensis HOM05D003848 ORTHO05D004616 2.6e-83 313.9 601 49.1
Nitab4.5_0006700g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 1.3e-82 311.6 452 66.8
Oeu028073.1 Olea europaea HOM05D003848 ORTHO05D004616 3.8e-82 310.1 587 51.8
GSVIVG01001165001 Vitis vinifera HOM05D003848 ORTHO05D004616 6.4e-82 309.3 561 55.3
Actinidia24902 Actinidia chinensis HOM05D003848 ORTHO05D004616 1.4e-81 308.1 560 64.6
Cfa003508 Carpinus fangiana HOM05D003848 ORTHO05D004616 4.2e-81 306.6 568 53.9
Hma1.2p1_0822F.1_g224390 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 2.7e-80 303.9 580 54.0
Lj2C1116T3 Lonicera japonica HOM05D003848 ORTHO05D004616 2.7e-80 303.9 560 57.7
Dinv32920 Davidia involucrata HOM05D003848 ORTHO05D004616 1.7e-79 301.2 443 58.0
Cpa.g.sc52.49 Carica papaya HOM05D003848 ORTHO05D004616 3.0e-79 300.4 570 58.4
MBI07_g03188_MAGBIO Magnolia biondii HOM05D003848 ORTHO05D004616 1.1e-78 298.5 507 54.6
Lj1C175T4 Lonicera japonica HOM05D003848 ORTHO05D004616 2.5e-78 297.4 572 55.9
Cfa006159 Carpinus fangiana HOM05D003848 ORTHO05D004616 7.3e-78 295.8 573 56.7
Haze_04691 Corylus avellana HOM05D003848 ORTHO05D004616 7.3e-78 295.8 568 54.8
Haze_16066 Corylus avellana HOM05D003848 ORTHO05D004616 7.3e-78 295.8 560 56.1
HanXRQChr01g0002971 Helianthus annuus HOM05D003848 ORTHO05D004616 3.6e-77 293.5 474 63.7
TWI59G1147 Tripterygium wilfordii HOM05D003848 ORTHO05D004616 3.1e-76 290.4 576 56.2
Lj5g0005692 Lotus japonicus HOM05D003848 ORTHO05D004616 6.9e-76 289.3 561 54.7
Prupe.8G239200 Prunus persica HOM05D003848 ORTHO05D004616 6.9e-76 289.3 583 54.9
Aqoxy2G03377 Aquilegia oxysepala HOM05D003848 ORTHO05D004616 1.2e-75 288.5 580 53.1
Peaxi162Scf00217g00025 Petunia axillaris HOM05D003848 ORTHO05D004616 2.6e-75 287.3 552 60.3
COL.COLO4_09072 Corchorus olitorius HOM05D003848 ORTHO05D004616 5.8e-75 286.2 567 49.9
Atru.chr5.1462 Acer truncatum HOM05D003848 ORTHO05D004616 9.9e-75 285.4 553 55.9
Glyma.02G146600 Glycine max HOM05D003848 ORTHO05D004616 9.9e-75 285.4 576 58.3
Lalb_Chr06g0162931 Lupinus albus HOM05D003848 ORTHO05D004616 9.9e-75 285.4 472 65.5
Gohir.A12G004500 Gossypium hirsutum HOM05D003848 ORTHO05D004616 1.7e-74 284.6 617 56.7
Phvul.007G172800 Phaseolus vulgaris HOM05D003848 ORTHO05D004616 1.7e-74 284.6 565 55.9
Potri.002G051500 Populus trichocarpa HOM05D003848 ORTHO05D004616 2.9e-74 283.9 577 54.6
arahy.Tifrunner.gnm1.ann1.ARWK2P Arachis hypogaea HOM05D003848 ORTHO05D004616 6.4e-74 282.7 584 55.8
VMungo0720G2447 Vigna mungo HOM05D003848 ORTHO05D004616 8.4e-74 282.3 566 52.8
Thecc.01G276600 Theobroma cacao HOM05D003848 ORTHO05D004616 1.9e-73 281.2 565 54.2
arahy.Tifrunner.gnm1.ann1.X3NAFX Arachis hypogaea HOM05D003848 ORTHO05D004616 3.2e-73 280.4 583 55.2
Glyma.10G027400 Glycine max HOM05D003848 ORTHO05D004616 5.4e-73 279.6 566 58.7
THA.LOC104801238 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 5.4e-73 279.6 448 67.6
TAR369G1095 Trochodendron aralioides HOM05D003848 ORTHO05D004616 7.1e-73 279.3 452 60.4
Psat4g156760 Pisum sativum HOM05D003848 ORTHO05D004616 2.1e-72 277.7 569 48.2
DCAR_000720 Daucus carota HOM05D003848 ORTHO05D004616 2.7e-72 277.3 482 64.1
SHI27493 Sapria himalayana HOM05D004058 ORTHO05D001984 2.7e-72 277.3 171 82.5
HPP92_009020 Vanilla planifolia HOM05D003848 ORTHO05D004616 2.7e-72 277.3 448 56.5
MELO3C009735.2 Cucumis melo HOM05D003848 ORTHO05D004616 6.0e-72 276.2 565 58.2
TPR.G28157 Trifolium pratense HOM05D003848 ORTHO05D004616 6.0e-72 276.2 171 81.9
QL01p012613 Quercus lobata HOM05D003848 ORTHO05D004616 7.9e-72 275.8 551 52.1
Nn1g02285 Nelumbo nucifera HOM05D003848 ORTHO05D004616 1.3e-71 275.0 557 54.8
Ca_09749_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 2.3e-71 274.2 555 59.3
Gorai.008G004000 Gossypium raimondii HOM05D003848 ORTHO05D004616 2.3e-71 274.2 599 55.3
Lsat_1_v5_gn_5_184160 Lactuca sativa HOM05D003848 ORTHO05D004616 2.3e-71 274.2 457 65.4
Potri.005G210900 Populus trichocarpa HOM05D003848 ORTHO05D004616 3.0e-71 273.9 560 58.6
Ciclev10019827m.g Citrus clementina HOM05D003848 ORTHO05D004616 3.9e-71 273.5 437 68.4
Gohir.D12G004200 Gossypium hirsutum HOM05D003848 ORTHO05D004616 8.7e-71 272.3 599 54.6
vmacro18863 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 8.7e-71 272.3 554 55.8
Medtr8g028640 Medicago truncatula HOM05D003848 ORTHO05D004616 1.1e-70 271.9 560 57.0
Sabra05G0161100 Salix brachista HOM05D003848 ORTHO05D004616 1.9e-70 271.2 575 52.7
CANSAT01G1819 Cannabis sativa HOM05D003848 ORTHO05D004616 2.5e-70 270.8 172 80.2
ATR0824G270 Amborella trichopoda HOM05D003848 ORTHO05D004616 3.3e-70 270.4 557 52.1
CsaV3_3G039920 Cucumis sativus L. HOM05D003848 ORTHO05D004616 3.3e-70 270.4 567 57.7
THA.LOC104825995 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 3.3e-70 270.4 449 69.3
MD11G1283600 Malus domestica HOM05D003848 ORTHO05D004616 4.3e-70 270.0 587 53.8
SEGI_20713 Sequoiadendron giganteum HOM05D003848 ORTHO05D004616 5.6e-70 269.6 178 80.3
MD03G1262900 Malus domestica HOM05D003848 ORTHO05D004616 7.4e-70 269.2 568 58.6
FAN22G1557 Fragaria x ananassa HOM05D003848 ORTHO05D004616 9.6e-70 268.9 180 78.3
FAN17G2080 Fragaria x ananassa HOM05D003848 ORTHO05D004616 1.3e-69 268.5 579 55.8
TAR633G0718 Trochodendron aralioides HOM05D003848 ORTHO05D004616 1.3e-69 268.5 502 60.6
vmacro19513 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 1.3e-69 268.5 562 49.6
PGR119G0967 Punica granatum HOM05D003848 ORTHO05D004616 2.1e-69 267.7 563 59.9
ATR0332G007 Amborella trichopoda HOM05D003848 ORTHO05D004616 4.8e-69 266.5 529 51.8
ECA248G3600 Erigeron canadensis HOM05D003848 ORTHO05D004616 8.1e-69 265.8 437 61.3
RcHm_v2.0_Chr4g0409951 Rosa chinensis HOM05D003848 ORTHO05D004616 8.1e-69 265.8 568 55.6
Rhsim01G0273900 Rhododendron simsii HOM05D003848 ORTHO05D004616 1.4e-68 265.0 463 55.5
FvH4_4g12190 Fragaria vesca HOM05D003848 ORTHO05D004616 1.8e-68 264.6 583 55.1
FAN07G0259 Fragaria x ananassa HOM05D003848 ORTHO05D004616 1.8e-68 264.6 583 56.1
AagrBONN_evm.TU.Sc2ySwM_362.1784 Anthoceros agrestis HOM05D003848 ORTHO05D004616 6.9e-68 262.7 176 77.3
ClCG10G016420 Citrullus lanatus HOM05D003848 ORTHO05D004616 2.6e-67 260.8 562 58.9
Aa31LG5G2360 Aethionema arabicum HOM05D003848 ORTHO05D004616 3.4e-67 260.4 460 63.5
Manes.05G077600 Manihot esculenta HOM05D003848 ORTHO05D004616 4.5e-67 260.0 582 50.3
AT4G02720 Arabidopsis thaliana HOM05D003848 ORTHO05D004616 5.8e-67 259.6 463 64.6
Carub.0006s3439 Capsella rubella HOM05D003848 ORTHO05D004616 1.3e-66 258.5 459 63.4
Mapoly0051s0007 Marchantia polymorpha HOM05D003848 ORTHO05D004616 2.2e-66 257.7 154 83.1
CARHR251050 Cardamine hirsuta HOM05D003848 ORTHO05D004616 2.9e-66 257.3 177 76.3
Pp3c9_17960 Physcomitrium patens HOM05D003848 ORTHO05D004616 2.9e-66 257.3 172 75.6
Zm00001eb314820 Zea mays HOM05D003848 ORTHO05D004616 3.8e-66 256.9 170 77.6
Ah.02g110950 Amaranthus hybridus HOM05D003848 ORTHO05D004616 8.4e-66 255.8 157 82.2
CDE06G2067 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 1.1e-65 255.4 520 49.4
Thhalv10028691m.g Eutrema salsugineum HOM05D003848 ORTHO05D004616 1.9e-65 254.6 459 63.8
CBR_g4136 Chara braunii HOM05D003848 ORTHO05D004616 3.2e-65 253.8 160 80.6
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 3.2e-65 253.8 165 77.0
AL6G50290 Arabidopsis lyrata HOM05D003848 ORTHO05D004616 5.5e-65 253.1 463 63.7
BcaC01g01560 Brassica carinata HOM05D003848 ORTHO05D004616 5.5e-65 253.1 181 71.8
AUR62017852 Chenopodium quinoa HOM05D003848 ORTHO05D004616 5.5e-65 253.1 173 74.6
Sc24g0003320 Simmondsia chinensis HOM05D003848 ORTHO05D004616 5.5e-65 253.1 518 58.9
SMO231G0049 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 2.1e-64 251.1 165 77.0
AUR62003538 Chenopodium quinoa HOM05D003848 ORTHO05D004616 2.7e-64 250.8 173 74.0
AagrBONN_evm.TU.Sc2ySwM_344.5133 Anthoceros agrestis HOM05D003848 ORTHO05D004616 6.0e-64 249.6 152 83.6
BcaB01g02014 Brassica carinata HOM05D003848 ORTHO05D004616 7.9e-64 249.2 458 51.3
C03p93080 Brassica napus HOM05D003848 ORTHO05D004616 1.0e-63 248.8 178 71.9
Sp6g02650 Schrenkiella parvula HOM05D003848 ORTHO05D004616 1.8e-63 248.1 460 63.3
Sed0011367 Sechium edule HOM05D003848 ORTHO05D004616 5.1e-63 246.5 562 56.8
Hund11854 Selenicereus undatus HOM05D003848 ORTHO05D004616 2.5e-62 244.2 170 76.5
PSO210G3188 Papaver somniferum HOM05D003848 ORTHO05D004616 5.6e-62 243.0 486 49.6
FAN22G0164 Fragaria x ananassa HOM05D003848 ORTHO05D004616 6.2e-61 239.6 565 54.3
SalBow4G2167 Salvia bowleyana HOM05D003848 ORTHO05D004616 6.2e-61 239.6 180 73.3
Duzib177G1090 Durio zibethinus HOM05D003848 ORTHO05D004616 8.1e-61 239.2 167 74.3
C03p93150 Brassica napus HOM05D003848 ORTHO05D004616 1.4e-60 238.4 157 77.7
EL10Ac5g10556 Beta vulgaris HOM05D003848 ORTHO05D004616 6.9e-60 236.1 553 56.2
PSO832G2619 Papaver somniferum HOM05D003848 ORTHO05D004616 2.6e-59 234.2 568 47.5
BcaC01g01554 Brassica carinata HOM05D003848 ORTHO05D004616 2.9e-58 230.7 135 83.7
Manes.01G206800 Manihot esculenta HOM05D003848 ORTHO05D004616 8.4e-58 229.2 498 41.0
C03p93070 Brassica napus HOM05D003848 ORTHO05D004616 1.4e-57 228.4 134 83.6
C09p02220 Brassica napus HOM05D003848 ORTHO05D004616 1.2e-56 225.3 167 70.7
BolC3t21610H Brassica oleracea HOM05D003848 ORTHO05D004616 1.6e-56 224.9 124 87.9
BcaC01g01558 Brassica carinata HOM05D003848 ORTHO05D004616 2.1e-56 224.6 134 82.8
Rhsim10G0030500 Rhododendron simsii HOM05D003848 ORTHO05D004616 1.0e-55 222.2 130 87.7
BolC9t53150H Brassica oleracea HOM05D003848 ORTHO05D004616 1.3e-55 221.9 456 48.7
A09p02120 Brassica napus HOM05D003848 ORTHO05D004616 1.8e-55 221.5 456 48.9
A09p54740 Brassica napus HOM05D003848 ORTHO05D004616 2.3e-55 221.1 131 83.2
BolC8t51344H Brassica oleracea HOM05D003848 ORTHO05D004616 2.3e-55 221.1 459 48.4
QL03p072399 Quercus lobata HOM05D003848 ORTHO05D004616 5.1e-55 219.9 549 44.6
A09p30470 Brassica napus HOM05D003848 ORTHO05D004616 8.7e-55 219.2 134 80.6
BraA04t17534Z Brassica rapa HOM05D003848 ORTHO05D004616 8.7e-55 219.2 177 67.8
BraA09t35861Z Brassica rapa HOM05D003848 ORTHO05D004616 1.1e-54 218.8 456 50.4
A04p19390 Brassica napus HOM05D003848 ORTHO05D004616 1.5e-54 218.4 179 67.6
C09p02210 Brassica napus HOM05D003848 ORTHO05D004616 1.5e-54 218.4 131 82.4
BcaC04g24009 Brassica carinata HOM05D003848 ORTHO05D004616 2.5e-54 217.6 456 48.5
BcaC02g08380 Brassica carinata HOM05D003848 ORTHO05D004616 5.7e-54 216.5 177 68.4
TPR.G23082 Trifolium pratense HOM05D003848 ORTHO05D004616 5.7e-54 216.5 129 84.5
C08p37610 Brassica napus HOM05D003848 ORTHO05D004616 6.3e-53 213.0 456 47.1
C04p54970 Brassica napus HOM05D003848 ORTHO05D004616 1.4e-52 211.8 173 68.8
BolC4t27032H Brassica oleracea HOM05D003848 ORTHO05D004616 1.4e-52 211.8 173 68.8
C03p93100 Brassica napus HOM05D003848 ORTHO05D004616 9.0e-52 209.1 456 51.3
BolC3t21613H Brassica oleracea HOM05D003848 ORTHO05D004616 7.6e-51 206.1 502 46.0
SGA_v2.0_scaffold138G35328 Striga asiatica HOM05D003848 ORTHO05D004616 1.7e-50 204.9 163 68.7
CDE07G1463 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 1.1e-49 202.2 174 63.8
BcaC01g01561 Brassica carinata HOM05D003848 ORTHO05D004616 2.5e-49 201.1 456 34.6
Ca_04836_v3 Cicer arietinum L. HOM05D001515 ORTHO05D004616 1.3e-45 188.7 113 84.1
arahy.Tifrunner.gnm1.ann1.3GG3GM Arachis hypogaea HOM05D004461 ORTHO05D005543 3.7e-45 187.2 410 58.3
C03p93140 Brassica napus HOM05D003848 ORTHO05D004616 7.7e-43 179.5 127 74.0
Nn4g26302 Nelumbo nucifera HOM05D003848 ORTHO05D004616 1.0e-42 179.1 100 90.0
Oeu017054.1 Olea europaea HOM05D004271 ORTHO05D006011 2.9e-42 177.6 134 74.6
BcaC03g13677 Brassica carinata HOM05D003848 ORTHO05D004616 9.4e-41 172.6 133 69.2
MCO02G035 Micromonas commoda HOM05D003848 ORTHO05D004616 1.0e-39 169.1 106 80.2
BcaC03g16168 Brassica carinata HOM05D003848 ORTHO05D004616 4.8e-37 160.2 105 75.2
Hma1.2p1_0667F.1_g199770 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 3.4e-35 154.1 164 56.1
PRCOL_00001828 Prasinoderma coloniale HOM05D003848 ORTHO05D004616 5.0e-34 150.2 105 70.5
Cre01.g032250 Chlamydomonas reinhardtii HOM05D003848 ORTHO05D004616 4.7e-32 143.7 100 68.0
Actinidia21120 Actinidia chinensis HOM05D003848 ORTHO05D004616 1.5e-30 138.7 160 55.0
BraA09t40884Z Brassica rapa HOM05D003848 ORTHO05D004616 2.0e-30 138.3 86 79.1
BraA09t38617Z Brassica rapa HOM05D003848 ORTHO05D004616 7.4e-30 136.3 86 77.9
Haze_27548 Corylus avellana HOM05D003848 ORTHO05D004616 8.2e-29 132.9 112 55.4
Os09g0455400 Oryza sativa ssp. japonica HOM05D003848 ORTHO05D004616 1.6e-27 128.6 75 86.7
C02p39120 Brassica napus HOM05D003848 ORTHO05D004616 8.5e-26 122.9 86 70.9
BolC2t09922H Brassica oleracea HOM05D003848 ORTHO05D004616 2.5e-25 121.3 86 69.8
unitig_0.g1042 Utricularia gibba HOM05D003848 ORTHO05D004616 2.3e-23 114.8 63 90.5
Lj1A173G45 Lonicera japonica HOM05D003848 ORTHO05D004616 1.5e-22 112.1 181 45.3
BNapus_Darmor_BZH_scaffold_38p02440 Brassica napus HOM05D003848 ORTHO05D004616 1.3e-21 109.0 70 77.1
BNapus_Darmor_BZH_scaffold_38p02460 Brassica napus HOM05D003848 ORTHO05D004616 8.2e-21 106.3 70 75.7
FAN22G1718 Fragaria x ananassa HOM05D003848 ORTHO05D004616 3.1e-20 104.4 493 48.5
BolC2t06954H Brassica oleracea HOM05D003848 ORTHO05D004616 1.3e-18 99.0 69 72.5
MD07G1100600 Malus domestica HOM05D003848 ORTHO05D004616 5.0e-18 97.1 90 58.9
Ca_05843_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 4.7e-16 90.5 50 86.0
vmacro19512 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 1.4e-15 89.0 483 34.6
Prupe.6G167600 Prunus persica HOM05D003848 ORTHO05D004616 1.5e-14 85.5 56 78.6
BcaC01g01557 Brassica carinata HOM05D003848 ORTHO05D004616 2.0e-11 75.1 61 62.3
C03p93060 Brassica napus HOM05D003848 ORTHO05D004616 5.9e-11 73.6 99 48.5
FAN22G0082 Fragaria x ananassa HOM05D003848 ORTHO05D035678 1.3e-10 72.4 214 33.2
BolC3t21614H Brassica oleracea HOM05D003848 ORTHO05D004616 5.0e-10 70.5 49 71.4
BraA09t40883Z Brassica rapa HOM05D003848 ORTHO05D004616 5.5e-09 67.0 68 60.3


User provided reference genes

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