Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.21548 Avicennia marina HOM05D004016 ORTHO05D004732 5.4e-113 411.0 206 100.0
MSTRG.18246 Avicennia marina HOM05D004016 ORTHO05D004732 2.9e-74 282.3 208 72.6
Migut.D00318 Erythranthe guttata HOM05D004016 ORTHO05D004732 7.2e-73 277.7 205 72.2
Oeu040656.1 Olea europaea HOM05D004016 ORTHO05D004732 1.0e-63 247.3 211 63.0
Oeu025739.1 Olea europaea HOM05D004016 ORTHO05D004732 5.7e-62 241.5 211 63.0
Dinv32914 Davidia involucrata HOM05D004016 ORTHO05D004732 2.8e-61 239.2 217 62.7
Hma1.2p1_0667F.1_g199710 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 4.5e-59 231.9 216 60.6
SGA_v2.0_scaffold1G00497 Striga asiatica HOM05D004016 ORTHO05D004732 2.2e-58 229.6 239 55.2
Lj2E1169T0 Lonicera japonica HOM05D004016 ORTHO05D004732 3.8e-58 228.8 220 60.0
Cc01_g19290 Coffea canephora HOM05D004016 ORTHO05D004732 3.2e-57 225.7 225 60.9
Migut.N02038 Erythranthe guttata HOM05D004016 ORTHO05D004732 7.2e-57 224.6 208 61.5
Oeu028065.1 Olea europaea HOM05D004016 ORTHO05D004732 1.0e-55 220.7 224 58.0
MSTRG.17454 Avicennia marina HOM05D004016 ORTHO05D004732 1.8e-55 219.9 207 60.4
SGA_v2.0_scaffold138G35322 Striga asiatica HOM05D004016 ORTHO05D004732 8.8e-55 217.6 232 56.5
PGSC0003DMG400019358 Solanum tuberosum HOM05D004016 ORTHO05D004732 1.5e-54 216.9 220 57.3
Solyc09g065380.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 1.3e-53 213.8 220 57.3
Sopen09g027150 Solanum pennellii HOM05D004016 ORTHO05D004732 4.8e-53 211.8 220 57.3
Hma1.2p1_0822F.1_g224340 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 4.1e-52 208.8 219 56.6
Prupe.8G238400 Prunus persica HOM05D004016 ORTHO05D004732 2.6e-51 206.1 217 56.2
FAN24G3262 Fragaria x ananassa HOM05D004016 ORTHO05D004732 1.3e-50 203.8 221 54.3
FvH4_2g23281 Fragaria vesca HOM05D004016 ORTHO05D004732 1.1e-49 200.7 216 54.6
Gohir.A08G065500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 4.7e-48 195.3 217 55.8
COL.COLO4_09066 Corchorus olitorius HOM05D004016 ORTHO05D004732 6.1e-48 194.9 225 55.1
Manes.01G206100 Manihot esculenta HOM05D004016 ORTHO05D004732 1.0e-47 194.1 223 55.2
Actinidia21126 Actinidia chinensis HOM05D004016 ORTHO05D004732 1.4e-47 193.7 217 54.8
MD11G1282800 Malus domestica HOM05D004016 ORTHO05D004732 1.8e-47 193.4 224 54.0
Ah.02g110900 Amaranthus hybridus HOM05D004016 ORTHO05D004732 2.3e-47 193.0 218 53.7
FAN20G3152 Fragaria x ananassa HOM05D004016 ORTHO05D004732 3.0e-47 192.6 220 55.0
MD03G1262100 Malus domestica HOM05D004016 ORTHO05D004732 3.0e-47 192.6 217 53.0
Peaxi162Scf00783g00017 Petunia axillaris HOM05D004016 ORTHO05D004732 3.0e-47 192.6 223 51.1
Nitab4.5_0002928g0010 Nicotiana tabacum HOM05D004016 ORTHO05D004732 4.0e-47 192.2 209 53.6
Manes.05G079900 Manihot esculenta HOM05D004016 ORTHO05D004732 5.2e-47 191.8 221 51.6
CAN.G1549.22 Capsicum annuum HOM05D004016 ORTHO05D004732 1.2e-46 190.7 219 49.8
Duzib138G0182 Durio zibethinus HOM05D004016 ORTHO05D004732 1.2e-46 190.7 221 56.1
Gorai.004G078400 Gossypium raimondii HOM05D004016 ORTHO05D004732 1.2e-46 190.7 217 54.8
AUR62028601 Chenopodium quinoa HOM05D004016 ORTHO05D004732 1.5e-46 190.3 215 54.4
Gohir.D08G074000 Gossypium hirsutum HOM05D004016 ORTHO05D004732 2.0e-46 189.9 217 54.4
Thecc.01G275600 Theobroma cacao HOM05D004016 ORTHO05D004732 2.0e-46 189.9 225 55.1
FAN15G1959 Fragaria x ananassa HOM05D004016 ORTHO05D004732 2.6e-46 189.5 214 51.9
Potri.002G050900 Populus trichocarpa HOM05D004016 ORTHO05D004732 2.6e-46 189.5 226 53.5
CAN.G1549.11 Capsicum annuum HOM05D004016 ORTHO05D004732 4.4e-46 188.7 219 49.8
Cpa.g.sc487.4 Carica papaya HOM05D004016 ORTHO05D004732 5.7e-46 188.3 227 51.5
Haze_04687 Corylus avellana HOM05D004016 ORTHO05D004732 1.7e-45 186.8 214 53.7
Duzib133G1129 Durio zibethinus HOM05D004016 ORTHO05D004732 1.7e-45 186.8 220 53.6
Sabra02G0041700 Salix brachista HOM05D004016 ORTHO05D004732 1.7e-45 186.8 226 53.1
FAN27G2694 Fragaria x ananassa HOM05D004016 ORTHO05D004732 2.8e-45 186.0 215 53.0
EL10Ac5g10544 Beta vulgaris HOM05D004016 ORTHO05D004732 4.8e-45 185.3 214 50.9
Potri.005G211400 Populus trichocarpa HOM05D004016 ORTHO05D004732 4.8e-45 185.3 227 53.7
RcHm_v2.0_Chr6g0290651 Rosa chinensis HOM05D004016 ORTHO05D004732 8.2e-45 184.5 229 51.5
Cfa006163 Carpinus fangiana HOM05D004016 ORTHO05D004732 1.4e-44 183.7 215 52.6
CAN.G1549.21 Capsicum annuum HOM05D004016 ORTHO05D004732 1.8e-44 183.3 219 48.4
Lj1C48T4 Lonicera japonica HOM05D004016 ORTHO05D004732 4.1e-44 182.2 220 51.8
Ca_09744_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 7.0e-44 181.4 214 53.3
TWI12G1445 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 7.0e-44 181.4 216 53.2
vmacro14911 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 7.0e-44 181.4 216 53.2
Ciclev10022155m.g Citrus clementina HOM05D004016 ORTHO05D004732 2.0e-43 179.9 227 52.4
Sopen06g035580 Solanum pennellii HOM05D004016 ORTHO05D004732 2.7e-43 179.5 219 47.9
TWI18G0383 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 4.5e-43 178.7 222 54.5
MELO3C014394.2 Cucumis melo HOM05D004016 ORTHO05D004732 5.9e-43 178.3 217 51.2
Atru.chr5.1471 Acer truncatum HOM05D004016 ORTHO05D004732 1.3e-42 177.2 229 52.4
Nitab4.5_0008064g0020 Nicotiana tabacum HOM05D004016 ORTHO05D004732 1.7e-42 176.8 207 51.2
PGSC0003DMG400020056 Solanum tuberosum HOM05D004016 ORTHO05D004732 1.7e-42 176.8 219 47.5
Gorai.004G216600 Gossypium raimondii HOM05D004016 ORTHO05D004732 2.2e-42 176.4 205 52.7
Nitab4.5_0005172g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 2.2e-42 176.4 207 50.2
Solyc06g084200.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 2.2e-42 176.4 216 47.2
ClCG07G000350 Citrullus lanatus HOM05D004016 ORTHO05D004732 3.8e-42 175.6 216 50.5
CsaV3_6G037200 Cucumis sativus L. HOM05D004016 ORTHO05D004732 3.8e-42 175.6 217 50.2
Gohir.D08G204600 Gossypium hirsutum HOM05D004016 ORTHO05D004732 5.0e-42 175.3 206 52.9
TAR633G2817 Trochodendron aralioides HOM05D004016 ORTHO05D004732 5.0e-42 175.3 211 54.0
Gohir.A08G186500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.1e-41 174.1 206 52.4
Lalb_Chr02g0142631 Lupinus albus HOM05D004016 ORTHO05D004732 1.1e-41 174.1 211 53.1
Lsat_1_v5_gn_8_56660 Lactuca sativa HOM05D004016 ORTHO05D004732 1.5e-41 173.7 230 52.6
Rhsim01G0273500 Rhododendron simsii HOM05D004016 ORTHO05D004732 2.5e-41 172.9 216 54.2
Sed0007164 Sechium edule HOM05D004016 ORTHO05D004732 5.5e-41 171.8 219 49.8
THA.LOC104801244 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 9.4e-41 171.0 215 48.4
arahy.Tifrunner.gnm1.ann1.256EAD Arachis hypogaea HOM05D004016 ORTHO05D004732 1.6e-40 170.2 217 49.3
TAR636G0684 Trochodendron aralioides HOM05D004016 ORTHO05D004732 2.1e-40 169.9 209 50.2
THA.LOC104825992 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 4.7e-40 168.7 221 49.8
Sabra05G0161500 Salix brachista HOM05D004016 ORTHO05D004732 1.0e-39 167.5 223 48.9
Ca_08613_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 1.8e-39 166.8 215 49.3
Lj1g0004863 Lotus japonicus HOM05D004016 ORTHO05D004732 2.3e-39 166.4 216 48.6
LjContig00056g0010505 Lotus japonicus HOM05D004016 ORTHO05D004732 2.3e-39 166.4 216 48.6
Lalb_Chr21g0306401 Lupinus albus HOM05D004016 ORTHO05D004732 2.3e-39 166.4 213 50.7
Oeu013891.1 Olea europaea HOM05D004016 ORTHO05D004732 5.2e-39 165.2 168 54.2
DCAR_002723 Daucus carota HOM05D004016 ORTHO05D004732 1.2e-38 164.1 230 48.3
HanXRQChr04g0118991 Helianthus annuus HOM05D004016 ORTHO05D004732 1.2e-38 164.1 227 48.9
Eucgr.H01463 Eucalyptus grandis HOM05D004016 ORTHO05D004732 2.0e-38 163.3 218 50.0
Sc05g0001440 Simmondsia chinensis HOM05D004016 ORTHO05D004732 2.6e-38 162.9 209 48.8
Oeu034146.1 Olea europaea HOM05D004016 ORTHO05D004732 3.4e-38 162.5 176 52.3
Gohir.A11G124100 Gossypium hirsutum HOM05D004016 ORTHO05D004732 7.5e-38 161.4 215 48.8
Lalb_Chr06g0162891 Lupinus albus HOM05D004016 ORTHO05D004732 1.3e-37 160.6 215 49.3
Peaxi162Scf01248g00010 Petunia axillaris HOM05D004016 ORTHO05D004732 1.7e-37 160.2 209 49.8
PGR044G0005 Punica granatum HOM05D004016 ORTHO05D004732 8.3e-37 157.9 217 52.1
vmacro02591 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 1.8e-36 156.8 173 56.1
Gorai.007G138300 Gossypium raimondii HOM05D004016 ORTHO05D004732 3.1e-36 156.0 214 47.7
Psat3g063280 Pisum sativum HOM05D004016 ORTHO05D004732 7.0e-36 154.8 213 48.4
Glyma.10G027800 Glycine max HOM05D004016 ORTHO05D004732 9.1e-36 154.5 220 50.9
Nitab4.5_0009529g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 9.1e-36 154.5 188 50.5
VMungo1383G1854 Vigna mungo HOM05D004016 ORTHO05D004732 9.1e-36 154.5 215 49.8
Phvul.001G153100 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 1.6e-35 153.7 215 49.8
unitig_0.g129 Utricularia gibba HOM05D004016 ORTHO05D004732 1.6e-35 153.7 146 58.9
Sc17g0001350 Simmondsia chinensis HOM05D004016 ORTHO05D004732 4.5e-35 152.1 209 48.3
Glyma.02G146200 Glycine max HOM05D004016 ORTHO05D004732 7.7e-35 151.4 219 50.2
Gohir.D11G129300 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.3e-34 150.6 214 46.7
Rhsim13G0026600 Rhododendron simsii HOM05D004016 ORTHO05D004732 1.3e-34 150.6 217 46.1
Lj5g0005099 Lotus japonicus HOM05D004016 ORTHO05D004732 5.0e-34 148.7 219 45.7
Aqoxy5G00450 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 1.9e-33 146.7 210 49.0
CiPaw.08G107200 Carya illinoinensis HOM05D004016 ORTHO05D004732 2.5e-33 146.4 185 47.0
Actinidia24906 Actinidia chinensis HOM05D004016 ORTHO05D004732 3.3e-33 146.0 168 50.6
Aa31LG5G2350 Aethionema arabicum HOM05D004016 ORTHO05D004732 3.3e-33 146.0 220 45.9
Phvul.007G173300 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 3.3e-33 146.0 214 48.1
Hund02825 Selenicereus undatus HOM05D004016 ORTHO05D004732 3.3e-33 146.0 222 47.3
DCAR_018429 Daucus carota HOM05D004016 ORTHO05D004732 9.5e-33 144.4 249 40.6
TPR.G27140 Trifolium pratense HOM05D004016 ORTHO05D004732 1.2e-32 144.1 207 49.3
Glyma.19G157800 Glycine max HOM05D004016 ORTHO05D004732 1.6e-32 143.7 217 48.8
Glyma.03G155700 Glycine max HOM05D004016 ORTHO05D004732 4.7e-32 142.1 218 48.6
Medtr7g095160 Medicago truncatula HOM05D004016 ORTHO05D004732 8.0e-32 141.4 210 45.7
Hund27940 Selenicereus undatus HOM05D004016 ORTHO05D004732 8.0e-32 141.4 220 45.9
ECA236G1435 Erigeron canadensis HOM05D004016 ORTHO05D004732 3.0e-31 139.4 210 43.8
CARHR251020 Cardamine hirsuta HOM05D004016 ORTHO05D004732 1.5e-30 137.1 219 43.8
Sp6g02620 Schrenkiella parvula HOM05D004016 ORTHO05D004732 1.5e-30 137.1 218 44.5
Thhalv10028968m.g Eutrema salsugineum HOM05D004016 ORTHO05D004732 4.4e-30 135.6 217 43.8
QL12p021105 Quercus lobata HOM05D004016 ORTHO05D004732 4.4e-30 135.6 233 42.5
VMungo0720G0880 Vigna mungo HOM05D004016 ORTHO05D004732 4.4e-30 135.6 200 46.5
Psat6g059840 Pisum sativum HOM05D004016 ORTHO05D004732 2.2e-29 133.3 195 47.2
AT4G02715 Arabidopsis thaliana HOM05D004016 ORTHO05D004732 2.8e-29 132.9 216 43.5
TPR.G24294 Trifolium pratense HOM05D004016 ORTHO05D004732 8.3e-29 131.3 212 42.0
AL6G50300 Arabidopsis lyrata HOM05D004016 ORTHO05D004732 5.4e-28 128.6 216 43.1
Carub.0006s3440 Capsella rubella HOM05D004016 ORTHO05D004732 2.7e-27 126.3 217 42.9
Medtr1g071810 Medicago truncatula HOM05D004016 ORTHO05D004732 2.7e-27 126.3 89 73.0
BcaB05g23659 Brassica carinata HOM05D004016 ORTHO05D004732 4.5e-27 125.6 217 42.9
BcaB01g02015 Brassica carinata HOM05D004016 ORTHO05D004732 1.7e-26 123.6 213 42.3
PSO761G0274 Papaver somniferum HOM05D004016 ORTHO05D004732 1.5e-25 120.6 221 43.4
BcaC04g24008 Brassica carinata HOM05D004016 ORTHO05D004732 1.9e-25 120.2 206 42.2
BolC9t53149H Brassica oleracea HOM05D004016 ORTHO05D004732 1.9e-25 120.2 206 42.2
C09p02200 Brassica napus HOM05D004016 ORTHO05D004732 4.3e-25 119.0 204 42.2
Aqoxy2G03410 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 7.3e-25 118.2 206 43.2
HPP92_013967 Vanilla planifolia HOM05D004016 ORTHO05D004732 1.2e-24 117.5 209 42.6
ClCG09G007200 Citrullus lanatus HOM05D004016 ORTHO05D004732 3.6e-24 115.9 209 41.6
BraA09t35860Z Brassica rapa HOM05D004016 ORTHO05D004732 1.8e-23 113.6 206 40.8
A09p02110 Brassica napus HOM05D004016 ORTHO05D004732 3.0e-23 112.8 206 40.8
ATR0697G155 Amborella trichopoda HOM05D004016 ORTHO05D004732 1.5e-22 110.5 282 32.6
PSO210G5515 Papaver somniferum HOM05D004016 ORTHO05D004732 2.0e-22 110.2 227 42.3
Psat1g067520 Pisum sativum HOM05D004016 ORTHO05D004732 3.4e-22 109.4 183 43.7
C02p39140 Brassica napus HOM05D004016 ORTHO05D004732 2.9e-21 106.3 207 39.1
BcaC03g16166 Brassica carinata HOM05D004016 ORTHO05D004732 4.9e-21 105.5 202 39.6
ECA247G1708 Erigeron canadensis HOM05D004016 ORTHO05D004732 9.2e-20 101.3 149 44.3
CsaV3_7G027970 Cucumis sativus L. HOM05D004016 ORTHO05D004732 6.6e-18 95.1 207 38.6
MELO3C015815.2 Cucumis melo HOM05D004016 ORTHO05D004732 1.5e-17 94.0 207 37.7
BolC2t09924H Brassica oleracea HOM05D004016 ORTHO05D004732 3.3e-17 92.8 200 37.0
Os03g0160200 Oryza sativa ssp. japonica HOM05D004016 ORTHO05D004732 2.1e-16 90.1 209 37.8
A03p30890 Brassica napus HOM05D004016 ORTHO05D004732 1.8e-15 87.0 86 55.8
Zm00001eb403300 Zea mays HOM05D004016 ORTHO05D004732 2.3e-15 86.7 213 39.0
Gorai.009G456000 Gossypium raimondii HOM05D004016 ORTHO05D004732 2.6e-14 83.2 134 44.0
Zm00001eb047890 Zea mays HOM05D004016 ORTHO05D004732 5.8e-14 82.0 157 40.1
Sed0001131 Sechium edule HOM05D004016 ORTHO05D004732 1.1e-12 77.8 93 52.7
BraA02t07483Z Brassica rapa HOM05D004016 ORTHO05D004732 2.0e-11 73.6 155 38.1
SEGI_39625 Sequoiadendron giganteum HOM05D004016 ORTHO05D004732 4.6e-11 72.4 98 46.9
BcaC01g06736 Brassica carinata HOM05D002144 ORTHO05D002170 7.8e-11 71.6 83 50.6
A02p24930 Brassica napus HOM05D004016 ORTHO05D004732 7.8e-11 71.6 155 37.4
Mapoly0128s0012 Marchantia polymorpha HOM05D004016 ORTHO05D004732 1.9e-09 67.0 121 43.0
SEGI_04941 Sequoiadendron giganteum HOM05D004016 ORTHO05D004732 7.3e-09 65.1 103 41.7
SMO134G0037 Selaginella moellendorffii HOM05D004016 ORTHO05D004732 9.5e-09 64.7 111 42.3
GSVIVG01001172001 Vitis vinifera HOM05D004016 ORTHO05D004732 1.6e-08 63.9 140 34.3
BcaC01g06738 Brassica carinata HOM05D004016 ORTHO05D004732 8.1e-08 61.6 54 51.9
Nn4g22231 Nelumbo nucifera HOM05D004016 ORTHO05D004732 9.9e-06 54.7 60 51.7


User provided reference genes

Program Settings