Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.21512 Avicennia marina HOM05D006249 ORTHO05D007643 6.9e-198 693.7 338 100.0
Migut.D00374 Erythranthe guttata HOM05D006249 ORTHO05D007643 2.5e-139 499.2 308 78.6
SalBow4G2323 Salvia bowleyana HOM05D006249 ORTHO05D007643 6.6e-124 448.0 310 72.9
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 8.3e-119 431.0 248 81.0
Oeu018173.1 Olea europaea HOM05D006249 ORTHO05D007643 5.4e-118 428.3 309 70.2
COL.COLO4_06075 Corchorus olitorius HOM05D006249 ORTHO05D007643 1.5e-112 410.2 309 63.1
Cpa.g.sc52.92 Carica papaya HOM05D006249 ORTHO05D007643 2.6e-112 409.5 309 65.7
Dinv34569 Davidia involucrata HOM05D006249 ORTHO05D007643 5.8e-112 408.3 309 64.7
Thecc.01G267400 Theobroma cacao HOM05D006249 ORTHO05D007643 6.4e-111 404.8 309 63.1
CAN.G1259.4 Capsicum annuum HOM05D006249 ORTHO05D007643 2.4e-110 402.9 311 64.3
CSS0046504 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 5.4e-110 401.7 315 63.5
Sopen09g027650 Solanum pennellii HOM05D006249 ORTHO05D007643 4.6e-109 398.7 311 63.0
Cc01_g18850 Coffea canephora HOM05D006249 ORTHO05D007643 1.3e-108 397.1 325 60.9
Solyc09g065860.3 Solanum lycopersicum HOM05D006249 ORTHO05D007643 1.7e-108 396.7 311 62.7
RcHm_v2.0_Chr6g0289561 Rosa chinensis HOM05D006249 ORTHO05D007643 2.3e-108 396.4 310 63.2
Duzib138G0419 Durio zibethinus HOM05D006249 ORTHO05D007643 5.0e-108 395.2 307 62.9
Manes.05G084500 Manihot esculenta HOM05D006249 ORTHO05D007643 6.6e-108 394.8 308 64.6
Lj2C1159G1 Lonicera japonica HOM05D006249 ORTHO05D007643 4.3e-107 392.1 314 62.7
Peaxi162Scf00049g00209 Petunia axillaris HOM05D006249 ORTHO05D007643 4.3e-107 392.1 294 65.3
Potri.005G218700 Populus trichocarpa HOM05D006249 ORTHO05D007643 4.3e-107 392.1 309 63.8
Gorai.007G142000 Gossypium raimondii HOM05D006249 ORTHO05D007643 2.8e-106 389.4 309 61.2
QL12p042687 Quercus lobata HOM05D006249 ORTHO05D007643 8.1e-106 387.9 310 63.9
FvH4_2g22511 Fragaria vesca HOM05D006249 ORTHO05D007643 1.8e-105 386.7 310 62.3
Haze_24532 Corylus avellana HOM05D006249 ORTHO05D007643 2.3e-105 386.3 309 61.5
Gohir.D11G132800 Gossypium hirsutum HOM05D006249 ORTHO05D007643 8.9e-105 384.4 309 60.5
GSVIVG01000723001 Vitis vinifera HOM05D006249 ORTHO05D007643 8.9e-105 384.4 312 61.2
PGR044G2488 Punica granatum HOM05D006249 ORTHO05D007643 2.0e-104 383.3 311 60.5
CiPaw.03G257400 Carya illinoinensis HOM05D006249 ORTHO05D007643 9.8e-104 380.9 291 64.6
CSS0032391 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 1.7e-103 380.2 298 63.1
Gohir.A11G127400 Gossypium hirsutum HOM05D006249 ORTHO05D007643 1.7e-103 380.2 309 59.9
Sc17g0000990 Simmondsia chinensis HOM05D006249 ORTHO05D007643 1.7e-103 380.2 268 65.3
MD05G1205700 Malus domestica HOM05D006249 ORTHO05D007643 2.2e-103 379.8 311 59.8
TAR362G0606 Trochodendron aralioides HOM05D006249 ORTHO05D007643 2.9e-103 379.4 315 63.2
Ciclev10021257m.g Citrus clementina HOM05D006249 ORTHO05D007643 1.4e-102 377.1 315 59.0
vmacro14872 Vaccinium macrocarpon HOM05D006249 ORTHO05D007643 1.9e-102 376.7 262 68.7
Aqoxy2G03531 Aquilegia oxysepala HOM05D006249 ORTHO05D007643 4.1e-102 375.6 298 61.1
Rhsim01G0269700 Rhododendron simsii HOM05D006249 ORTHO05D007643 7.1e-102 374.8 322 59.9
Prupe.8G232100 Prunus persica HOM05D006249 ORTHO05D007643 2.1e-101 373.2 311 59.8
Atru.chr5.1566 Acer truncatum HOM05D006249 ORTHO05D007643 3.5e-101 372.5 231 73.6
Atru.chr5.1568 Acer truncatum HOM05D006249 ORTHO05D007643 3.5e-101 372.5 231 73.6
ECA248G0032 Erigeron canadensis HOM05D006249 ORTHO05D007643 7.8e-101 371.3 315 58.7
Nitab4.5_0001556g0120 Nicotiana tabacum HOM05D006249 ORTHO05D007643 1.3e-100 370.5 294 61.9
PGSC0003DMG400019301 Solanum tuberosum HOM05D006249 ORTHO05D007643 1.7e-100 370.2 234 73.5
CANSAT01G0091 Cannabis sativa HOM05D006249 ORTHO05D007643 5.1e-100 368.6 308 59.1
C05p01650 Brassica napus HOM05D006249 ORTHO05D007643 5.6e-99 365.2 246 69.1
BcaC07g42289 Brassica carinata HOM05D006249 ORTHO05D007643 1.6e-98 363.6 242 69.4
BolC5t28944H Brassica oleracea HOM05D006249 ORTHO05D007643 1.6e-98 363.6 242 69.4
CARHR002370 Cardamine hirsuta HOM05D006249 ORTHO05D007643 2.8e-98 362.8 258 67.1
AT1G03030 Arabidopsis thaliana HOM05D006249 ORTHO05D007643 3.6e-98 362.5 269 63.9
Hund09572 Selenicereus undatus HOM05D006249 ORTHO05D007643 3.6e-98 362.5 240 69.6
Carub.0001s0216 Capsella rubella HOM05D006249 ORTHO05D007643 6.2e-98 361.7 256 65.6
ClCG01G001850 Citrullus lanatus HOM05D006249 ORTHO05D007643 6.2e-98 361.7 253 65.6
CsaV3_5G002000 Cucumis sativus L. HOM05D006249 ORTHO05D007643 1.4e-97 360.5 260 64.2
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.4e-97 360.5 344 55.2
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.4e-97 360.5 344 55.2
A10p01650 Brassica napus HOM05D006249 ORTHO05D007643 1.8e-97 360.1 246 68.7
BraA10t42442Z Brassica rapa HOM05D006249 ORTHO05D007643 2.3e-97 359.8 246 68.3
Lsat_1_v5_gn_5_186740 Lactuca sativa HOM05D006249 ORTHO05D007643 2.0e-96 356.7 310 56.5
Aa31LG1G9510 Aethionema arabicum HOM05D006249 ORTHO05D007643 3.4e-96 355.9 246 66.7
AUR62011941 Chenopodium quinoa HOM05D006249 ORTHO05D007643 3.4e-96 355.9 312 58.3
Nn1g02571 Nelumbo nucifera HOM05D006249 ORTHO05D007643 4.4e-96 355.5 312 57.1
Eucgr.K03312 Eucalyptus grandis HOM05D006249 ORTHO05D007643 5.8e-96 355.1 259 64.5
Thhalv10008317m.g Eutrema salsugineum HOM05D006249 ORTHO05D007643 7.6e-96 354.8 243 67.5
TPR.G5717 Trifolium pratense HOM05D006249 ORTHO05D007643 7.6e-96 354.8 247 66.0
MELO3C005753.2 Cucumis melo HOM05D006249 ORTHO05D007643 2.2e-95 353.2 242 66.5
AL1G12480 Arabidopsis lyrata HOM05D006249 ORTHO05D007643 2.9e-95 352.8 231 71.4
Medtr7g096100 Medicago truncatula HOM05D006249 ORTHO05D007643 8.4e-95 351.3 247 64.8
THA.LOC104801257 Tarenaya hassleriana HOM05D006249 ORTHO05D007643 8.4e-95 351.3 248 65.7
HanXRQChr01g0006841 Helianthus annuus HOM05D006249 ORTHO05D007643 1.1e-94 350.9 262 63.7
Psat3g061040 Pisum sativum HOM05D006249 ORTHO05D007643 1.4e-94 350.5 252 63.1
Glyma.19G161200 Glycine max HOM05D006249 ORTHO05D007643 3.2e-94 349.4 252 63.1
MBI04_g06851_MAGBIO Magnolia biondii HOM05D006249 ORTHO05D007643 3.2e-94 349.4 308 56.8
Lj1g0022179 Lotus japonicus HOM05D006249 ORTHO05D007643 9.2e-94 347.8 312 56.1
Nitab4.5_0000187g0200 Nicotiana tabacum HOM05D006249 ORTHO05D007643 2.7e-93 346.3 232 70.7
arahy.Tifrunner.gnm1.ann1.EN4NAA Arachis hypogaea HOM05D006249 ORTHO05D007643 6.0e-93 345.1 304 57.6
arahy.Tifrunner.gnm1.ann1.3ZGG11 Arachis hypogaea HOM05D006249 ORTHO05D007643 3.9e-92 342.4 247 64.8
Lalb_Chr25g0290111 Lupinus albus HOM05D006249 ORTHO05D007643 5.1e-92 342.0 307 54.7
ATR0665G572 Amborella trichopoda HOM05D006249 ORTHO05D007643 1.1e-91 340.9 342 52.0
Os12g0601200 Oryza sativa ssp. japonica HOM05D006249 ORTHO05D007643 1.2e-90 337.4 305 56.4
CDE06G0138 Ceratophyllum demersum HOM05D006249 ORTHO05D007643 1.6e-90 337.0 260 59.6
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 2.1e-90 336.7 260 60.0
TWI18G0435 Tripterygium wilfordii HOM05D006249 ORTHO05D007643 3.6e-90 335.9 272 61.8
Sabra05G0167700 Salix brachista HOM05D005019 ORTHO05D006625 3.2e-86 322.8 310 56.1
HPP92_012490 Vanilla planifolia HOM05D006249 ORTHO05D007643 2.1e-85 320.1 250 57.6
Zm00001eb135540 Zea mays HOM05D006249 ORTHO05D007643 2.1e-85 320.1 249 61.0
PSO832G1981 Papaver somniferum HOM05D006249 ORTHO05D007643 2.3e-84 316.6 252 60.7
PSO210G4763 Papaver somniferum HOM05D006249 ORTHO05D007643 1.9e-83 313.5 252 60.3
BcaC07g42286 Brassica carinata HOM05D006249 ORTHO05D007643 1.3e-82 310.8 246 61.0
unitig_0.g1129 Utricularia gibba HOM05D006249 ORTHO05D007643 2.8e-82 309.7 180 78.9
Sed0010412 Sechium edule HOM05D006249 ORTHO05D007643 1.1e-81 307.8 240 60.0
Ah.02g111470 Amaranthus hybridus HOM05D006249 ORTHO05D007643 1.1e-75 287.7 255 57.6
Mapoly0096s0074 Marchantia polymorpha HOM05D006249 ORTHO05D007643 1.3e-74 284.3 253 54.9
AUR62032256 Chenopodium quinoa HOM05D006249 ORTHO05D007643 3.7e-74 282.7 247 59.1
Actinidia21156 Actinidia chinensis HOM05D006249 ORTHO05D007643 4.2e-70 269.2 299 48.5
Pp3c17_16800 Physcomitrium patens HOM05D006249 ORTHO05D007643 4.2e-70 269.2 272 48.9
Medtr4g076080 Medicago truncatula HOM05D006249 ORTHO05D007643 2.1e-69 266.9 242 54.1
BcaC07g42292 Brassica carinata HOM05D006249 ORTHO05D007643 3.9e-68 262.7 261 54.0
Phvul.001G156700 Phaseolus vulgaris HOM05D006249 ORTHO05D007643 5.3e-65 252.3 189 59.8
AagrBONN_evm.TU.Sc2ySwM_228.3891 Anthoceros agrestis HOM05D006249 ORTHO05D007643 8.4e-63 245.0 217 54.8
EL10Ac5g10475 Beta vulgaris HOM05D006249 ORTHO05D007643 1.9e-62 243.8 151 73.5
SEGI_12640 Sequoiadendron giganteum HOM05D006249 ORTHO05D007643 3.0e-60 236.5 176 56.8
RcHm_v2.0_Chr4g0397901 Rosa chinensis HOM05D006249 ORTHO05D007643 3.2e-54 216.5 176 60.2
Oeu018171.1 Olea europaea HOM05D006249 ORTHO05D007643 6.7e-52 208.8 168 66.1
SMO358G0282 Selaginella moellendorffii HOM05D000331 ORTHO05D002018 1.5e-51 207.6 177 55.9
Cre02.g101000 Chlamydomonas reinhardtii HOM05D006249 ORTHO05D007643 1.7e-47 194.1 256 40.2
MCO14G208 Micromonas commoda HOM05D006249 ORTHO05D007643 6.3e-42 175.6 244 41.4
arahy.Tifrunner.gnm1.ann1.U7WVQR Arachis hypogaea HOM05D006249 ORTHO05D007643 4.2e-38 162.9 198 44.9
CBR_g19145 Chara braunii HOM05D006249 ORTHO05D007643 4.2e-38 162.9 165 50.3
Sp1g02020 Schrenkiella parvula HOM05D006249 ORTHO05D007643 6.1e-29 132.5 124 53.2
Hund30725 Selenicereus undatus HOM05D006249 ORTHO05D007643 1.4e-28 131.3 99 62.6
Ca_15970_v3 Cicer arietinum L. HOM05D006249 ORTHO05D007643 2.8e-26 123.6 106 52.8
Medtr8g064430 Medicago truncatula HOM05D006249 ORTHO05D007643 2.8e-26 123.6 121 51.2
Hund30696 Selenicereus undatus HOM05D006249 ORTHO05D007643 8.2e-26 122.1 98 59.2
Cfa022768 Carpinus fangiana HOM05D006249 ORTHO05D007643 2.0e-24 117.5 150 41.3
PRCOL_00003971 Prasinoderma coloniale HOM05D006249 ORTHO05D007643 5.9e-24 115.9 178 37.1
Glyma.03G158766 Glycine max HOM05D006249 ORTHO05D007643 2.9e-23 113.6 92 59.8
arahy.Tifrunner.gnm1.ann1.FBQK8B Arachis hypogaea HOM05D006249 ORTHO05D007643 5.2e-20 102.8 119 47.9
arahy.Tifrunner.gnm1.ann1.AHQ53Z Arachis hypogaea HOM05D006249 ORTHO05D007643 1.2e-19 101.7 119 47.1
SHI34902 Sapria himalayana HOM05D006249 ORTHO05D007643 5.4e-17 92.8 155 38.7
SHI29847 Sapria himalayana HOM05D006249 ORTHO05D007643 1.2e-16 91.7 138 37.7
CSS0005124 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 1.6e-16 91.3 60 73.3
Glyma.03G158832 Glycine max HOM05D006249 ORTHO05D007643 1.3e-15 88.2 63 65.1
SHI16544 Sapria himalayana HOM05D006249 ORTHO05D007643 1.2e-11 75.1 112 39.3
SHI29011 Sapria himalayana HOM05D006249 ORTHO05D007643 6.3e-10 69.3 197 27.4
SHI36883 Sapria himalayana HOM05D006249 ORTHO05D007643 2.4e-09 67.4 49 57.1
SHI36882 Sapria himalayana HOM05D006249 ORTHO05D007643 3.3e-06 57.0 116 31.9


User provided reference genes

Program Settings