Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.21409 Avicennia marina HOM05D006024 ORTHO05D007505 5.9e-200 700.7 356 100.0
Oeu042179.3 Olea europaea HOM05D006024 ORTHO05D007505 1.1e-161 573.5 356 80.3
Migut.D00559 Erythranthe guttata HOM05D006024 ORTHO05D007505 2.6e-155 552.4 355 80.8
Cc01_g04140 Coffea canephora HOM05D006024 ORTHO05D007505 4.9e-154 548.1 358 75.4
Sopen01g002620 Solanum pennellii HOM05D006024 ORTHO05D007505 1.4e-153 546.6 358 75.4
Solyc01g006630.3 Solanum lycopersicum HOM05D006024 ORTHO05D007505 2.4e-153 545.8 358 75.4
GSVIVG01025335001 Vitis vinifera HOM05D006024 ORTHO05D007505 1.2e-147 526.9 356 74.2
Hma1.2p1_2304F.1_g319350 Hydrangea macrophylla HOM05D006024 ORTHO05D007505 9.9e-147 523.9 361 71.7
Manes.14G014400 Manihot esculenta HOM05D006024 ORTHO05D007505 4.9e-146 521.5 357 71.7
Nitab4.5_0003796g0050 Nicotiana tabacum HOM05D006024 ORTHO05D007505 1.1e-145 520.4 362 73.5
CiPaw.13G165500 Carya illinoinensis HOM05D006024 ORTHO05D007505 1.4e-145 520.0 361 72.9
PSO339G6331 Papaver somniferum HOM05D006024 ORTHO05D007505 2.1e-144 516.2 359 69.9
RcHm_v2.0_Chr5g0078111 Rosa chinensis HOM05D006024 ORTHO05D007505 2.1e-144 516.2 358 72.3
MD11G1022800 Malus domestica HOM05D006024 ORTHO05D007505 2.7e-144 515.8 356 72.8
Gorai.010G128200 Gossypium raimondii HOM05D006024 ORTHO05D007505 3.5e-144 515.4 356 70.8
Thecc.09G223300 Theobroma cacao HOM05D006024 ORTHO05D007505 4.6e-144 515.0 355 71.5
Prupe.6G018500 Prunus persica HOM05D006024 ORTHO05D007505 7.9e-144 514.2 357 71.1
Cfa009695 Carpinus fangiana HOM05D006024 ORTHO05D007505 1.0e-143 513.8 361 72.0
Gohir.D06G112300 Gossypium hirsutum HOM05D006024 ORTHO05D007505 1.0e-143 513.8 356 70.5
CSS0019947 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 1.3e-143 513.5 356 72.2
CSS0045029 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 1.3e-143 513.5 356 72.2
Peaxi162Scf00559g00415 Petunia axillaris HOM05D006024 ORTHO05D007505 1.3e-143 513.5 362 73.2
Aqoxy1G00184 Aquilegia oxysepala HOM05D006024 ORTHO05D007505 1.7e-143 513.1 357 70.0
Cpa.g.sc84.110 Carica papaya HOM05D006024 ORTHO05D007505 1.7e-143 513.1 356 71.6
CANSAT54G0336 Cannabis sativa HOM05D006024 ORTHO05D007505 2.3e-143 512.7 356 72.2
Potri.T085501 Populus trichocarpa HOM05D006024 ORTHO05D007505 3.9e-143 511.9 361 70.4
THA.LOC104816910 Tarenaya hassleriana HOM05D006024 ORTHO05D007505 3.9e-143 511.9 361 70.6
FvH4_3g43551 Fragaria vesca HOM05D006024 ORTHO05D007505 5.1e-143 511.5 358 71.2
PGR119G1295 Punica granatum HOM05D006024 ORTHO05D007505 6.6e-143 511.1 361 70.6
QL01p006224 Quercus lobata HOM05D006024 ORTHO05D007505 8.7e-143 510.8 390 67.4
HanXRQChr02g0056471 Helianthus annuus HOM05D006024 ORTHO05D007505 9.6e-142 507.3 362 69.9
MSTRG.12483 Avicennia marina HOM05D006024 ORTHO05D007505 2.8e-141 505.8 356 71.1
Potri.003G210900 Populus trichocarpa HOM05D006024 ORTHO05D007505 3.6e-141 505.4 361 70.1
Eucgr.J00813 Eucalyptus grandis HOM05D006024 ORTHO05D007505 1.1e-140 503.8 355 69.9
TWI60G1552 Tripterygium wilfordii HOM05D006024 ORTHO05D007505 1.4e-140 503.4 356 71.1
A05p27990 Brassica napus HOM05D006024 ORTHO05D007505 6.9e-140 501.1 356 70.5
Thhalv10021019m.g Eutrema salsugineum HOM05D006024 ORTHO05D007505 6.9e-140 501.1 356 70.5
Ciclev10015756m.g Citrus clementina HOM05D006024 ORTHO05D007505 1.2e-139 500.4 356 70.2
COL.COLO4_09894 Corchorus olitorius HOM05D006024 ORTHO05D007505 1.2e-139 500.4 355 69.9
Sp3g18810 Schrenkiella parvula HOM05D006024 ORTHO05D007505 3.4e-139 498.8 356 70.2
CAN.G388.68 Capsicum annuum HOM05D006024 ORTHO05D007505 5.8e-139 498.0 387 67.2
Carub.0003s2075 Capsella rubella HOM05D006024 ORTHO05D007505 1.7e-138 496.5 361 68.7
SGA_v2.0_scaffold1G00800 Striga asiatica HOM05D006024 ORTHO05D007505 4.9e-138 495.0 356 73.0
Sed0023125 Sechium edule HOM05D006024 ORTHO05D007505 6.4e-138 494.6 356 69.1
DCAR_002037 Daucus carota HOM05D006024 ORTHO05D007505 8.4e-138 494.2 356 70.5
Lsat_1_v5_gn_6_50101 Lactuca sativa HOM05D006024 ORTHO05D007505 1.1e-137 493.8 361 69.0
CARHR096620 Cardamine hirsuta HOM05D006024 ORTHO05D007505 2.4e-137 492.7 361 68.1
AL3G34710 Arabidopsis lyrata HOM05D006024 ORTHO05D007505 3.2e-137 492.3 361 68.1
AT3G20790 Arabidopsis thaliana HOM05D006024 ORTHO05D007505 1.6e-136 490.0 356 68.5
Duzib168G0763 Durio zibethinus HOM05D006024 ORTHO05D007505 1.6e-136 490.0 355 69.0
FAN11G3540 Fragaria x ananassa HOM05D006024 ORTHO05D007505 2.1e-136 489.6 361 69.5
Glyma.13G342800 Glycine max HOM05D006024 ORTHO05D007505 1.0e-135 487.3 359 69.4
arahy.Tifrunner.gnm1.ann1.7L1RE9 Arachis hypogaea HOM05D006024 ORTHO05D007505 2.3e-135 486.1 354 69.2
Phvul.005G150400 Phaseolus vulgaris HOM05D006024 ORTHO05D007505 5.1e-135 485.0 361 69.5
Ca_01271_v3 Cicer arietinum L. HOM05D006024 ORTHO05D007505 6.7e-135 484.6 359 68.8
CsaV3_4G023790 Cucumis sativus L. HOM05D006024 ORTHO05D007505 6.7e-135 484.6 358 67.3
Migut.N02293 Erythranthe guttata HOM05D006024 ORTHO05D007505 1.1e-134 483.8 358 67.3
Atru.chr3.2505 Acer truncatum HOM05D006024 ORTHO05D007505 1.5e-134 483.4 362 67.1
BcaC05g28281 Brassica carinata HOM05D006024 ORTHO05D007505 5.6e-134 481.5 356 68.5
Nn7g36060 Nelumbo nucifera HOM05D006024 ORTHO05D007505 7.4e-134 481.1 358 66.5
BcaB06g26149 Brassica carinata HOM05D006024 ORTHO05D007505 9.6e-134 480.7 356 68.3
BolC5t33061H Brassica oleracea HOM05D006024 ORTHO05D007505 1.3e-133 480.3 356 68.3
BraA05t21682Z Brassica rapa HOM05D006024 ORTHO05D007505 1.3e-133 480.3 356 68.3
MELO3C014640.2 Cucumis melo HOM05D006024 ORTHO05D007505 1.3e-133 480.3 359 66.9
C05p43290 Brassica napus HOM05D006024 ORTHO05D007505 2.1e-133 479.6 356 68.3
Lj4g0026168 Lotus japonicus HOM05D006024 ORTHO05D007505 2.8e-133 479.2 361 67.6
TPR.G18832 Trifolium pratense HOM05D006024 ORTHO05D007505 6.2e-133 478.0 357 68.9
Lj3g0007180 Lotus japonicus HOM05D006024 ORTHO05D007505 1.1e-132 477.2 361 67.6
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 1.5e-131 473.4 361 67.3
Lalb_Chr24g0396941 Lupinus albus HOM05D006024 ORTHO05D007505 2.2e-130 469.5 356 66.3
Os09g0280300 Oryza sativa ssp. japonica HOM05D006024 ORTHO05D007505 8.4e-130 467.6 357 64.7
Medtr2g098500 Medicago truncatula HOM05D006024 ORTHO05D007505 6.0e-128 461.5 356 66.6
EL10Ac4g10317 Beta vulgaris HOM05D006024 ORTHO05D007505 3.0e-127 459.1 355 65.4
Dinv36303 Davidia involucrata HOM05D006024 ORTHO05D007505 6.7e-127 458.0 313 72.5
ATR0605G294 Amborella trichopoda HOM05D006024 ORTHO05D007505 2.5e-126 456.1 359 62.1
Gohir.A06G108500 Gossypium hirsutum HOM05D006024 ORTHO05D007505 9.6e-126 454.1 355 63.9
FAN11G0987 Fragaria x ananassa HOM05D006024 ORTHO05D007505 6.9e-124 448.0 361 65.7
AUR62019251 Chenopodium quinoa HOM05D006024 ORTHO05D007505 9.0e-124 447.6 361 63.2
Lj1A365G18 Lonicera japonica HOM05D006024 ORTHO05D007505 1.5e-123 446.8 373 63.0
Lju1319A3G40 Lonicera japonica HOM05D006024 ORTHO05D007505 1.5e-123 446.8 369 63.4
Aa31LG8G7600 Aethionema arabicum HOM05D006024 ORTHO05D007505 6.5e-122 441.4 359 62.7
AUR62000078 Chenopodium quinoa HOM05D006024 ORTHO05D007505 2.5e-121 439.5 361 62.0
unitig_8.g3081 Utricularia gibba HOM05D006024 ORTHO05D007505 7.2e-121 438.0 365 65.2
Hund22080 Selenicereus undatus HOM05D006024 ORTHO05D007505 6.1e-120 434.9 355 63.4
VMungo0251G0909 Vigna mungo HOM05D006024 ORTHO05D007505 3.0e-119 432.6 361 60.7
MBI04_g27131_MAGBIO Magnolia biondii HOM05D006024 ORTHO05D007505 8.7e-119 431.0 356 62.1
vmacro04169 Vaccinium macrocarpon HOM05D006024 ORTHO05D007505 8.2e-117 424.5 478 51.5
VMungo1080G1390 Vigna mungo HOM05D006024 ORTHO05D007505 1.8e-116 423.3 361 59.0
arahy.Tifrunner.gnm1.ann1.3AB71G Arachis hypogaea HOM05D006024 ORTHO05D007505 2.2e-114 416.4 351 62.4
SEGI_39854 Sequoiadendron giganteum HOM05D006024 ORTHO05D007505 2.4e-108 396.4 356 56.5
Sc06g0004470 Simmondsia chinensis HOM05D006024 ORTHO05D007505 5.9e-99 365.2 257 69.3
Pp3c6_24290 Physcomitrium patens HOM05D006024 ORTHO05D007505 3.8e-98 362.5 355 49.0
Rhsim13G0225400 Rhododendron simsii HOM05D006024 ORTHO05D007505 2.3e-95 353.2 258 68.6
ECA233G0904 Erigeron canadensis HOM05D006024 ORTHO05D007505 1.5e-94 350.5 251 70.5
Mapoly0150s0011 Marchantia polymorpha HOM05D006024 ORTHO05D007505 9.7e-94 347.8 360 48.1
TAR636G0774 Trochodendron aralioides HOM05D006024 ORTHO05D007505 2.4e-92 343.2 252 66.3
Nitab4.5_0008137g0040 Nicotiana tabacum HOM05D006024 ORTHO05D007505 4.1e-92 342.4 362 54.4
Pp3c16_13070 Physcomitrium patens HOM05D006024 ORTHO05D007505 1.1e-89 334.3 379 45.9
AagrBONN_evm.TU.Sc2ySwM_344.3372 Anthoceros agrestis HOM05D006024 ORTHO05D007505 1.5e-86 323.9 355 46.5
Haze_23046 Corylus avellana HOM05D006024 ORTHO05D007505 7.7e-83 311.6 299 58.2
SMO116G0160 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 3.8e-82 309.3 359 46.8
SMO146G0097 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 4.9e-77 292.4 339 42.8
SMO144G0113 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 5.9e-75 285.4 339 44.2
Zm00001eb094580 Zea mays HOM05D006024 ORTHO05D007505 1.9e-73 280.4 203 65.0
ClCG02G023630 Citrullus lanatus HOM05D006024 ORTHO05D007505 2.3e-71 273.5 201 66.7
Pp3c3_20310 Physcomitrium patens HOM05D006024 ORTHO05D007505 4.0e-71 272.7 356 41.9
AagrBONN_evm.TU.Sc2ySwM_344.254 Anthoceros agrestis HOM05D006024 ORTHO05D007505 6.8e-71 271.9 358 39.4
Mapoly0033s0066 Marchantia polymorpha HOM05D006024 ORTHO05D007505 9.8e-70 268.1 359 40.9
HPP92_000457 Vanilla planifolia HOM05D006024 ORTHO05D007505 1.9e-44 184.1 147 63.3
FAN16G2307 Fragaria x ananassa HOM05D006024 ORTHO05D007505 5.4e-44 182.6 147 66.0
TAR636G1381 Trochodendron aralioides HOM05D006024 ORTHO05D007505 7.6e-38 162.2 178 52.8
Cre01.g023300 Chlamydomonas reinhardtii HOM05D006024 ORTHO05D007505 1.6e-35 154.5 401 30.9
Psat7g086040 Pisum sativum HOM05D006024 ORTHO05D007505 1.3e-34 151.4 213 43.7
Sc06g0004480 Simmondsia chinensis HOM05D006024 ORTHO05D007505 1.8e-31 141.0 99 67.7
Psat6g204000 Pisum sativum HOM05D006024 ORTHO05D007505 2.0e-30 137.5 152 52.6
ECA233G1997 Erigeron canadensis HOM05D006024 ORTHO05D007505 4.5e-30 136.3 98 66.3
FAN25G0441 Fragaria x ananassa HOM05D006024 ORTHO05D007505 1.4e-28 131.3 128 54.7
Rhsim13G0225300 Rhododendron simsii HOM05D006024 ORTHO05D007505 1.9e-28 131.0 89 68.5
Psat5g288680 Pisum sativum HOM05D006024 ORTHO05D007505 3.0e-26 123.6 100 65.0
Cfa023900 Carpinus fangiana HOM05D006024 ORTHO05D007505 3.9e-26 123.2 357 26.9
Glyma.15G031500 Glycine max HOM05D006024 ORTHO05D007505 2.4e-23 114.0 135 54.1
Actinidia16298 Actinidia chinensis HOM05D006024 ORTHO05D007505 4.5e-22 109.8 91 61.5
Medtr8g016390 Medicago truncatula HOM05D006024 ORTHO05D007505 7.6e-22 109.0 98 59.2
C01p43430 Brassica napus HOM05D006024 ORTHO05D007505 1.9e-20 104.4 155 42.6
BolC1t04302H Brassica oleracea HOM05D006024 ORTHO05D007505 1.9e-20 104.4 155 42.6
CSS0049558 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 7.1e-20 102.4 83 66.3
CSS0042824 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 2.1e-19 100.9 84 64.3
Psat5g288640 Pisum sativum HOM05D006024 ORTHO05D007505 6.7e-18 95.9 115 53.0
CSS0043067 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 1.2e-14 85.1 79 57.0
Oeu037561.1 Olea europaea HOM05D006024 ORTHO05D007505 1.0e-13 82.0 51 70.6
BcaC09g49021 Brassica carinata HOM05D006024 ORTHO05D007505 7.9e-11 72.4 74 58.1


User provided reference genes

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