Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.21373 Avicennia marina HOM05D004378 ORTHO05D005269 7.5e-89 330.5 166 100.0
MSTRG.18430 Avicennia marina HOM05D004378 ORTHO05D005269 4.0e-58 228.4 124 89.5
unitig_699.g19136 Utricularia gibba HOM05D004378 ORTHO05D005269 1.2e-57 226.9 132 84.8
Migut.N02321 Erythranthe guttata HOM05D004378 ORTHO05D005269 6.4e-56 221.1 122 86.1
Migut.D00605 Erythranthe guttata HOM05D004378 ORTHO05D005269 4.2e-55 218.4 118 88.1
unitig_27.g24995 Utricularia gibba HOM05D004378 ORTHO05D005269 1.2e-54 216.9 123 86.2
Lj6g0003660 Lotus japonicus HOM05D004378 ORTHO05D005269 6.0e-54 214.5 135 80.7
Cc01_g04470 Coffea canephora HOM05D004378 ORTHO05D005269 7.8e-54 214.2 134 79.1
TWI60G1037 Tripterygium wilfordii HOM05D004378 ORTHO05D005269 1.7e-53 213.0 134 79.1
Phvul.006G062100 Phaseolus vulgaris HOM05D004378 ORTHO05D005269 3.9e-53 211.8 135 80.0
VMungo0540G0714 Vigna mungo HOM05D004378 ORTHO05D005269 5.1e-53 211.5 135 79.3
Lalb_Chr18g0050451 Lupinus albus HOM05D004378 ORTHO05D005269 6.6e-53 211.1 135 79.3
Medtr3g061490 Medicago truncatula HOM05D004378 ORTHO05D005269 8.7e-53 210.7 135 78.5
Glyma.08G336000 Glycine max HOM05D004378 ORTHO05D005269 1.9e-52 209.5 135 78.5
Nn2g15350 Nelumbo nucifera HOM05D004378 ORTHO05D005269 3.3e-52 208.8 129 79.1
arahy.Tifrunner.gnm1.ann1.B78H3K Arachis hypogaea HOM05D004378 ORTHO05D005269 4.3e-52 208.4 136 78.7
arahy.Tifrunner.gnm1.ann1.YL0VRD Arachis hypogaea HOM05D004378 ORTHO05D005269 4.3e-52 208.4 136 78.7
ClCG03G013210 Citrullus lanatus HOM05D004378 ORTHO05D005269 5.6e-52 208.0 130 79.2
Lalb_Chr15g0082531 Lupinus albus HOM05D004378 ORTHO05D005269 5.6e-52 208.0 135 78.5
TPR.G14725 Trifolium pratense HOM05D004378 ORTHO05D005269 5.6e-52 208.0 135 77.0
MELO3C015197.2 Cucumis melo HOM05D004378 ORTHO05D005269 1.6e-51 206.5 130 78.5
Psat5g163880 Pisum sativum HOM05D004378 ORTHO05D005269 1.6e-51 206.5 135 77.0
SGA_v2.0_scaffold247G44883 Striga asiatica HOM05D004378 ORTHO05D005269 1.6e-51 206.5 119 86.6
Ca_14874_v3 Cicer arietinum L. HOM05D004378 ORTHO05D005269 2.1e-51 206.1 135 76.3
RcHm_v2.0_Chr5g0052271 Rosa chinensis HOM05D004378 ORTHO05D005269 2.1e-51 206.1 139 75.5
FvH4_3g28770 Fragaria vesca HOM05D004378 ORTHO05D005269 2.8e-51 205.7 153 69.3
CSS0043718 Camellia sinensis var. sinensis HOM05D004378 ORTHO05D005269 3.6e-51 205.3 131 77.9
CsaV3_1G042790 Cucumis sativus L. HOM05D004378 ORTHO05D005269 3.6e-51 205.3 130 77.7
GSVIVG01025251001 Vitis vinifera HOM05D004378 ORTHO05D005269 3.6e-51 205.3 141 73.8
Ciclev10015746m.g Citrus clementina HOM05D004378 ORTHO05D005269 4.8e-51 204.9 132 77.3
TWI34G1172 Tripterygium wilfordii HOM05D004378 ORTHO05D005269 8.1e-51 204.1 134 76.9
Glyma.18G071100 Glycine max HOM05D004378 ORTHO05D005269 1.1e-50 203.8 135 77.0
SGA_v2.0_scaffold8G04586 Striga asiatica HOM05D004378 ORTHO05D005269 1.1e-50 203.8 119 85.7
Atru.chr3.2709 Acer truncatum HOM05D004378 ORTHO05D005269 1.4e-50 203.4 139 73.4
Lsat_1_v5_gn_6_26200 Lactuca sativa HOM05D004378 ORTHO05D005269 1.4e-50 203.4 126 78.6
THA.LOC104816878 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 1.4e-50 203.4 141 73.0
Dinv36255 Davidia involucrata HOM05D004378 ORTHO05D005269 2.4e-50 202.6 131 77.1
Sed0026402 Sechium edule HOM05D004378 ORTHO05D005269 2.4e-50 202.6 130 76.2
Gohir.A08G013900 Gossypium hirsutum HOM05D004378 ORTHO05D005269 5.3e-50 201.4 132 73.5
Gorai.004G019800 Gossypium raimondii HOM05D004378 ORTHO05D005269 5.3e-50 201.4 132 73.5
Hma1.2p1_0368F.1_g137300 Hydrangea macrophylla HOM05D004378 ORTHO05D005269 9.0e-50 200.7 130 76.2
Potri.009G052800 Populus trichocarpa HOM05D004378 ORTHO05D005269 1.2e-49 200.3 141 74.5
QL01p004640 Quercus lobata HOM05D004378 ORTHO05D005269 1.2e-49 200.3 141 72.3
CiPaw.13G159900 Carya illinoinensis HOM05D004378 ORTHO05D005269 1.5e-49 199.9 141 73.0
Gohir.D08G024400 Gossypium hirsutum HOM05D004378 ORTHO05D005269 1.5e-49 199.9 132 72.7
ECA233G1578 Erigeron canadensis HOM05D004378 ORTHO05D005269 2.0e-49 199.5 131 74.0
Prupe.4G250000 Prunus persica HOM05D004378 ORTHO05D005269 2.0e-49 199.5 139 71.9
HanXRQChr13g0401501 Helianthus annuus HOM05D004378 ORTHO05D005269 2.6e-49 199.1 131 74.0
Potri.001G257500 Populus trichocarpa HOM05D004378 ORTHO05D005269 3.4e-49 198.7 141 73.0
Actinidia06909 Actinidia chinensis HOM05D004378 ORTHO05D005269 5.8e-49 198.0 130 75.4
Actinidia16337 Actinidia chinensis HOM05D004378 ORTHO05D005269 5.8e-49 198.0 131 74.8
THA.LOC104824616 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 5.8e-49 198.0 138 73.2
HanXRQChr02g0051301 Helianthus annuus HOM05D004378 ORTHO05D005269 7.6e-49 197.6 131 74.0
MD11G1192300 Malus domestica HOM05D004378 ORTHO05D005269 7.6e-49 197.6 139 73.4
Nn7g36225 Nelumbo nucifera HOM05D004378 ORTHO05D005269 7.6e-49 197.6 172 64.5
Duzib168G0314 Durio zibethinus HOM05D004378 ORTHO05D005269 9.9e-49 197.2 141 69.5
Duzib150G1120 Durio zibethinus HOM05D004378 ORTHO05D005269 1.3e-48 196.8 141 72.3
Sabra16G0157500 Salix brachista HOM05D004378 ORTHO05D005269 1.3e-48 196.8 138 73.2
THA.LOC104799106 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 1.3e-48 196.8 133 72.9
CANSAT54G1532 Cannabis sativa HOM05D004378 ORTHO05D005269 1.7e-48 196.4 141 71.6
Sp3g18950 Schrenkiella parvula HOM05D004378 ORTHO05D005269 2.2e-48 196.1 141 68.8
Lalb_Chr20g0115231 Lupinus albus HOM05D004378 ORTHO05D005269 2.9e-48 195.7 134 73.9
Thecc.09G234500 Theobroma cacao HOM05D004378 ORTHO05D005269 2.9e-48 195.7 141 70.9
FAN11G1994 Fragaria x ananassa HOM05D004378 ORTHO05D005269 8.4e-48 194.1 159 66.0
FAN16G3181 Fragaria x ananassa HOM05D004378 ORTHO05D005269 8.4e-48 194.1 159 66.0
FAN25G2048 Fragaria x ananassa HOM05D004378 ORTHO05D005269 8.4e-48 194.1 159 66.0
CSS0001002 Camellia sinensis var. sinensis HOM05D004378 ORTHO05D005269 1.1e-47 193.7 104 88.5
Dinv22174 Davidia involucrata HOM05D004378 ORTHO05D005269 1.1e-47 193.7 104 88.5
PGSC0003DMG400007339 Solanum tuberosum HOM05D004378 ORTHO05D005269 1.1e-47 193.7 135 74.8
CiPaw.14G118500 Carya illinoinensis HOM05D004378 ORTHO05D005269 1.9e-47 193.0 141 70.2
Manes.06G163800 Manihot esculenta HOM05D004378 ORTHO05D005269 1.9e-47 193.0 141 69.5
BcaB04g20618 Brassica carinata HOM05D004378 ORTHO05D005269 2.4e-47 192.6 141 66.7
TAR057G0002 Trochodendron aralioides HOM05D004378 ORTHO05D005269 2.4e-47 192.6 130 72.3
Sc09g0000750 Simmondsia chinensis HOM05D004378 ORTHO05D005269 3.2e-47 192.2 134 73.9
TAR369G0513 Trochodendron aralioides HOM05D004378 ORTHO05D005269 3.2e-47 192.2 130 73.1
Nitab4.5_0000023g0700 Nicotiana tabacum HOM05D004378 ORTHO05D005269 5.4e-47 191.4 139 69.8
vmacro04153 Vaccinium macrocarpon HOM05D004378 ORTHO05D005269 5.4e-47 191.4 104 87.5
Ah.06g194140 Amaranthus hybridus HOM05D004378 ORTHO05D005269 7.1e-47 191.0 127 74.0
A01p33870 Brassica napus HOM05D004378 ORTHO05D005269 7.1e-47 191.0 141 66.0
AUR62000126 Chenopodium quinoa HOM05D004378 ORTHO05D005269 7.1e-47 191.0 127 73.2
Haze_23143 Corylus avellana HOM05D004378 ORTHO05D005269 1.2e-46 190.3 104 85.6
EL10Ac4g10244 Beta vulgaris HOM05D004378 ORTHO05D005269 1.6e-46 189.9 127 73.2
DCAR_030049 Daucus carota HOM05D004378 ORTHO05D005269 1.6e-46 189.9 129 72.1
Eucgr.J00761 Eucalyptus grandis HOM05D004378 ORTHO05D005269 1.6e-46 189.9 132 68.9
Oeu001481.2 Olea europaea HOM05D004378 ORTHO05D005269 1.6e-46 189.9 102 89.2
Thhalv10021027m.g Eutrema salsugineum HOM05D004378 ORTHO05D005269 2.1e-46 189.5 141 67.4
Rhsim13G0220800 Rhododendron simsii HOM05D004378 ORTHO05D005269 2.1e-46 189.5 107 84.1
Cfa009777 Carpinus fangiana HOM05D004378 ORTHO05D005269 2.7e-46 189.1 104 84.6
COL.COLO4_07579 Corchorus olitorius HOM05D004378 ORTHO05D005269 2.7e-46 189.1 104 85.6
Oeu016680.1 Olea europaea HOM05D004378 ORTHO05D005269 2.7e-46 189.1 105 84.8
BraA01t03495Z Brassica rapa HOM05D004378 ORTHO05D005269 6.0e-46 188.0 141 65.2
PGR119G1351 Punica granatum HOM05D004378 ORTHO05D005269 6.0e-46 188.0 103 87.4
CDE05G0340 Ceratophyllum demersum HOM05D004378 ORTHO05D005269 7.8e-46 187.6 125 75.2
Peaxi162Scf00032g00327 Petunia axillaris HOM05D004378 ORTHO05D005269 7.8e-46 187.6 134 70.1
Nitab4.5_0002786g0020 Nicotiana tabacum HOM05D004378 ORTHO05D005269 1.0e-45 187.2 137 69.3
Aa31LG10G3540 Aethionema arabicum HOM05D004378 ORTHO05D005269 1.3e-45 186.8 141 68.8
ATR0332G071 Amborella trichopoda HOM05D004378 ORTHO05D005269 1.3e-45 186.8 125 73.6
BcaB06g26167 Brassica carinata HOM05D004378 ORTHO05D005269 1.7e-45 186.4 141 66.0
C05p43130 Brassica napus HOM05D004378 ORTHO05D005269 1.7e-45 186.4 141 66.0
BolC5t33043H Brassica oleracea HOM05D004378 ORTHO05D005269 1.7e-45 186.4 141 66.0
Carub.0003s2090 Capsella rubella HOM05D004378 ORTHO05D005269 1.7e-45 186.4 141 64.5
CAN.G1204.2 Capsicum annuum HOM05D004378 ORTHO05D005269 1.7e-45 186.4 134 70.1
Hund22027 Selenicereus undatus HOM05D004378 ORTHO05D005269 1.7e-45 186.4 127 72.4
Lj1A330G22 Lonicera japonica HOM05D004378 ORTHO05D005269 3.0e-45 185.7 104 84.6
Lj2A629T47 Lonicera japonica HOM05D004378 ORTHO05D005269 3.9e-45 185.3 104 84.6
Aqoxy1G00284 Aquilegia oxysepala HOM05D004378 ORTHO05D005269 8.7e-45 184.1 129 69.8
Peaxi162Scf00004g02527 Petunia axillaris HOM05D004378 ORTHO05D005269 8.7e-45 184.1 120 73.3
Aa31LG8G7740 Aethionema arabicum HOM05D004378 ORTHO05D005269 1.1e-44 183.7 140 64.3
BcaB06g26169 Brassica carinata HOM05D004378 ORTHO05D005269 1.5e-44 183.3 141 66.0
A05p27790 Brassica napus HOM05D004378 ORTHO05D005269 1.9e-44 183.0 141 65.2
BraA05t21666Z Brassica rapa HOM05D004378 ORTHO05D005269 1.9e-44 183.0 141 65.2
CARHR096800 Cardamine hirsuta HOM05D004378 ORTHO05D005269 2.5e-44 182.6 141 64.5
Sabra09G0038500 Salix brachista HOM05D004378 ORTHO05D005269 2.5e-44 182.6 104 84.6
CDE05G0884 Ceratophyllum demersum HOM05D004378 ORTHO05D005269 3.3e-44 182.2 124 75.8
MBI04_g36075_MAGBIO Magnolia biondii HOM05D004378 ORTHO05D005269 4.3e-44 181.8 128 72.7
PSO339G6315 Papaver somniferum HOM05D004378 ORTHO05D005269 5.6e-44 181.4 129 69.0
PSO384G0525 Papaver somniferum HOM05D004378 ORTHO05D005269 5.6e-44 181.4 129 69.0
AT3G20920 Arabidopsis thaliana HOM05D004378 ORTHO05D005269 7.3e-44 181.0 141 64.5
Nitab4.5_0001587g0030 Nicotiana tabacum HOM05D004378 ORTHO05D005269 1.3e-43 180.3 147 66.7
BcaC01g03532 Brassica carinata HOM05D004378 ORTHO05D005269 2.8e-43 179.1 134 64.9
C03p51390 Brassica napus HOM05D004378 ORTHO05D005269 2.8e-43 179.1 134 64.9
SHI29790 Sapria himalayana HOM05D004378 ORTHO05D005269 3.6e-43 178.7 104 80.8
Nitab4.5_0002741g0140 Nicotiana tabacum HOM05D004378 ORTHO05D005269 1.1e-42 177.2 104 80.8
Sopen11g025430 Solanum pennellii HOM05D004378 ORTHO05D005269 4.0e-42 175.3 105 80.0
Lsat_1_v5_gn_2_31060 Lactuca sativa HOM05D004378 ORTHO05D005269 6.9e-42 174.5 105 79.0
Solyc01g008470.3 Solanum lycopersicum HOM05D004378 ORTHO05D005269 6.9e-42 174.5 137 67.9
Sopen01g003990 Solanum pennellii HOM05D004378 ORTHO05D005269 6.9e-42 174.5 137 67.9
BraA03t13351Z Brassica rapa HOM05D004378 ORTHO05D005269 9.0e-42 174.1 134 63.4
Actinidia06345 Actinidia chinensis HOM05D004378 ORTHO05D005269 4.5e-41 171.8 125 71.2
PGSC0003DMG400010703 Solanum tuberosum HOM05D004378 ORTHO05D005269 4.5e-41 171.8 137 66.4
A03p41980 Brassica napus HOM05D004378 ORTHO05D005269 7.6e-41 171.0 134 62.7
Zm00001eb064100 Zea mays HOM05D004378 ORTHO05D005269 1.7e-40 169.9 127 63.0
BolC3t17425H Brassica oleracea HOM05D004378 ORTHO05D005269 3.8e-40 168.7 148 58.8
Os02g0435000 Oryza sativa ssp. japonica HOM05D004378 ORTHO05D005269 4.2e-39 165.2 125 61.6
Sed0000917 Sechium edule HOM05D004378 ORTHO05D005269 5.4e-39 164.9 113 71.7
Zm00001eb210940 Zea mays HOM05D004378 ORTHO05D005269 5.4e-39 164.9 127 60.6
BcaC05g28205 Brassica carinata HOM05D004378 ORTHO05D005269 1.9e-36 156.4 134 61.2
SEGI_31334 Sequoiadendron giganteum HOM05D004378 ORTHO05D005269 2.5e-36 156.0 108 64.8
HPP92_024875 Vanilla planifolia HOM05D004378 ORTHO05D005269 4.0e-34 148.7 122 59.0
AagrBONN_evm.TU.Sc2ySwM_228.3794 Anthoceros agrestis HOM05D004378 ORTHO05D005269 2.1e-30 136.3 103 64.1
SMO117G0234 Selaginella moellendorffii HOM05D004378 ORTHO05D005269 6.7e-29 131.3 111 61.3
BolC1t04284H Brassica oleracea HOM05D004378 ORTHO05D005269 1.5e-28 130.2 76 73.7
AL3G34880 Arabidopsis lyrata HOM05D004378 ORTHO05D005269 1.3e-27 127.1 76 72.4
Pp3c16_12820 Physcomitrium patens HOM05D004378 ORTHO05D005269 3.7e-27 125.6 110 58.2
Manes.14G003200 Manihot esculenta HOM05D004378 ORTHO05D005269 6.2e-27 124.8 75 78.7
Mapoly0080s0045 Marchantia polymorpha HOM05D004378 ORTHO05D005269 1.8e-26 123.2 107 53.3
Pp3c27_5530 Physcomitrium patens HOM05D004378 ORTHO05D005269 1.0e-24 117.5 106 55.7
Peaxi162Scf00004g02528 Petunia axillaris HOM05D004378 ORTHO05D005269 1.7e-24 116.7 77 72.7
CBR_g54322 Chara braunii HOM05D004378 ORTHO05D005269 8.4e-24 114.4 140 47.1


User provided reference genes

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