Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.213 Avicennia marina HOM05D004604 ORTHO05D005744 0.0e+00 1206.0 598 100.0
Migut.F01373 Erythranthe guttata HOM05D004604 ORTHO05D005744 1.1e-195 687.2 601 61.6
Dinv34395 Davidia involucrata HOM05D004604 ORTHO05D005744 1.9e-190 669.8 577 62.0
CSS0014761 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 1.2e-189 667.2 605 60.5
SGA_v2.0_scaffold76G25082 Striga asiatica HOM05D004604 ORTHO05D005744 1.5e-187 660.2 600 59.5
Migut.F01374 Erythranthe guttata HOM05D004604 ORTHO05D005744 3.3e-187 659.1 572 62.2
Cc02_g06650 Coffea canephora HOM05D004604 ORTHO05D005744 2.4e-185 652.9 603 58.5
Manes.10G013900 Manihot esculenta HOM05D004604 ORTHO05D005744 5.9e-184 648.3 594 57.4
Oeu048694.1 Olea europaea HOM05D004604 ORTHO05D005744 1.9e-182 643.3 498 67.5
CSS0028164 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 5.5e-182 641.7 598 58.9
Lj1C953T18 Lonicera japonica HOM05D004604 ORTHO05D005744 1.6e-181 640.2 578 58.5
TWI09G1217 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 7.4e-179 631.3 597 57.1
Gohir.A10G235000 Gossypium hirsutum HOM05D004604 ORTHO05D005744 2.2e-178 629.8 599 56.3
Thecc.10G020600 Theobroma cacao HOM05D004604 ORTHO05D005744 2.8e-178 629.4 607 56.7
unitig_62.g23928 Utricularia gibba HOM05D004604 ORTHO05D005744 2.8e-178 629.4 626 56.9
Gorai.011G285800 Gossypium raimondii HOM05D004604 ORTHO05D005744 4.8e-178 628.6 599 56.1
Sabra10G0146600 Salix brachista HOM05D004604 ORTHO05D005744 1.5e-176 623.6 594 56.6
ECA238G1235 Erigeron canadensis HOM05D004604 ORTHO05D005744 2.6e-176 622.9 578 57.8
TAR623G0226 Trochodendron aralioides HOM05D004604 ORTHO05D005744 3.4e-176 622.5 614 56.7
Psat5g126400 Pisum sativum HOM05D004604 ORTHO05D005744 5.9e-176 621.7 601 55.9
Cfa001330 Carpinus fangiana HOM05D004604 ORTHO05D005744 1.3e-175 620.5 593 57.0
Nn2g11459 Nelumbo nucifera HOM05D004604 ORTHO05D005744 8.5e-175 617.8 599 55.4
Dinv17981 Davidia involucrata HOM05D004604 ORTHO05D005744 4.2e-174 615.5 497 65.2
TPR.G2507 Trifolium pratense HOM05D004604 ORTHO05D005744 4.2e-174 615.5 601 55.7
Rhsim03G0142100 Rhododendron simsii HOM05D004604 ORTHO05D005744 2.1e-173 613.2 580 56.0
FvH4_7g24330 Fragaria vesca HOM05D004604 ORTHO05D005744 3.6e-173 612.5 596 56.2
TAR369G0014 Trochodendron aralioides HOM05D004604 ORTHO05D005744 3.6e-173 612.5 593 56.7
MD01G1132500 Malus domestica HOM05D004604 ORTHO05D005744 6.1e-173 611.7 600 56.0
FAN01G3126 Fragaria x ananassa HOM05D004604 ORTHO05D005744 1.0e-172 610.9 593 56.5
FAN06G3796 Fragaria x ananassa HOM05D004604 ORTHO05D005744 1.0e-172 610.9 596 56.2
Medtr3g070310 Medicago truncatula HOM05D004604 ORTHO05D005744 1.4e-172 610.5 587 55.7
Hma1.2p1_0446F.1_g154570 Hydrangea macrophylla HOM05D004604 ORTHO05D005744 1.8e-172 610.1 595 57.0
RcHm_v2.0_Chr1g0369991 Rosa chinensis HOM05D004604 ORTHO05D005744 1.8e-172 610.1 580 56.7
CiPaw.02G191600 Carya illinoinensis HOM05D004604 ORTHO05D005744 3.9e-172 609.0 588 56.5
Atru.chr12.19 Acer truncatum HOM05D004604 ORTHO05D005744 5.1e-172 608.6 604 56.1
FAN10G0865 Fragaria x ananassa HOM05D004604 ORTHO05D005744 2.6e-171 606.3 593 55.6
MD07G1220300 Malus domestica HOM05D004604 ORTHO05D005744 7.4e-171 604.7 597 55.8
Prupe.2G248700 Prunus persica HOM05D004604 ORTHO05D005744 1.3e-170 604.0 605 55.0
Potri.010G190100 Populus trichocarpa HOM05D004604 ORTHO05D005744 3.7e-170 602.4 603 55.4
Cpa.g.sc19.189 Carica papaya HOM05D004604 ORTHO05D005744 6.3e-170 601.7 601 55.2
Glyma.18G028600 Glycine max HOM05D004604 ORTHO05D005744 6.3e-170 601.7 584 56.3
Ca_15268_v3 Cicer arietinum L. HOM05D004604 ORTHO05D005744 8.2e-170 601.3 602 54.5
Ciclev10030943m.g Citrus clementina HOM05D004604 ORTHO05D005744 8.2e-170 601.3 602 56.5
Nitab4.5_0005174g0010 Nicotiana tabacum HOM05D004604 ORTHO05D005744 1.4e-169 600.5 577 56.8
PGR044G2346 Punica granatum HOM05D004604 ORTHO05D005744 1.2e-168 597.4 587 54.3
arahy.Tifrunner.gnm1.ann1.E2DHW8 Arachis hypogaea HOM05D004604 ORTHO05D005744 2.0e-168 596.7 582 53.8
Nitab4.5_0000802g0040 Nicotiana tabacum HOM05D004604 ORTHO05D005744 4.5e-168 595.5 601 55.4
Duzib114G0112 Durio zibethinus HOM05D004604 ORTHO05D005744 1.3e-167 594.0 596 55.2
Lsat_1_v5_gn_2_122780 Lactuca sativa HOM05D004604 ORTHO05D005744 3.8e-167 592.4 607 53.4
Phvul.001G241900 Phaseolus vulgaris HOM05D004604 ORTHO05D005744 5.0e-167 592.0 577 55.6
Hund13846 Selenicereus undatus HOM05D004604 ORTHO05D005744 6.5e-167 591.7 594 54.5
CANSAT35G0855 Cannabis sativa HOM05D004604 ORTHO05D005744 1.4e-166 590.5 581 54.2
Glyma.11G228500 Glycine max HOM05D004604 ORTHO05D005744 5.5e-166 588.6 584 56.0
Lj6g0016498 Lotus japonicus HOM05D004604 ORTHO05D005744 9.4e-166 587.8 588 54.1
TWI73G0703 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 1.6e-165 587.0 642 52.5
Sopen06g017720 Solanum pennellii HOM05D004604 ORTHO05D005744 3.6e-165 585.9 604 53.1
ClCG11G006230 Citrullus lanatus HOM05D004604 ORTHO05D005744 4.7e-165 585.5 598 53.0
Lalb_Chr15g0084181 Lupinus albus HOM05D004604 ORTHO05D005744 1.0e-164 584.3 591 54.1
VMungo1383G0266 Vigna mungo HOM05D004604 ORTHO05D005744 3.9e-164 582.4 578 55.4
Aqoxy4G02603 Aquilegia oxysepala HOM05D004604 ORTHO05D005744 5.7e-163 578.6 602 52.2
PGSC0003DMG400023817 Solanum tuberosum HOM05D004604 ORTHO05D005744 3.7e-162 575.9 604 53.5
MELO3C008290.2 Cucumis melo HOM05D004604 ORTHO05D005744 6.3e-162 575.1 611 52.4
CsaV3_6G001760 Cucumis sativus L. HOM05D004604 ORTHO05D005744 8.2e-162 574.7 608 51.5
THA.LOC104816553 Tarenaya hassleriana HOM05D004604 ORTHO05D005744 1.6e-160 570.5 601 53.4
Lalb_Chr18g0052631 Lupinus albus HOM05D004604 ORTHO05D005744 2.0e-160 570.1 581 53.5
HanXRQChr14g0459851 Helianthus annuus HOM05D004604 ORTHO05D005744 3.5e-160 569.3 602 53.3
MBI05_g34496_MAGBIO Magnolia biondii HOM05D004604 ORTHO05D005744 3.5e-160 569.3 585 54.4
Peaxi162Scf00825g00019 Petunia axillaris HOM05D004604 ORTHO05D005744 3.5e-160 569.3 576 53.1
Eucgr.J00226 Eucalyptus grandis HOM05D004604 ORTHO05D005744 4.5e-160 568.9 616 52.9
HanXRQChr14g0459841 Helianthus annuus HOM05D004604 ORTHO05D005744 5.0e-159 565.5 595 52.4
Solyc06g051760.3 Solanum lycopersicum HOM05D004604 ORTHO05D005744 5.0e-159 565.5 611 51.9
PSO384G4393 Papaver somniferum HOM05D004604 ORTHO05D005744 1.2e-157 560.8 591 53.1
Potri.008G067000 Populus trichocarpa HOM05D004604 ORTHO05D005744 1.4e-156 557.4 533 55.3
CAN.G17.11 Capsicum annuum HOM05D004604 ORTHO05D005744 5.2e-156 555.4 609 51.9
Eucgr.J00228 Eucalyptus grandis HOM05D004604 ORTHO05D005744 2.0e-155 553.5 533 56.1
Sabra08G0049200 Salix brachista HOM05D004604 ORTHO05D005744 7.5e-155 551.6 590 52.4
GSVIVG01032843001 Vitis vinifera HOM05D004604 ORTHO05D005744 3.7e-154 549.3 595 52.3
PSO339G2357 Papaver somniferum HOM05D004604 ORTHO05D005744 4.8e-154 548.9 604 52.3
Sp6g37190 Schrenkiella parvula HOM05D004604 ORTHO05D005744 4.1e-153 545.8 600 50.0
Ah.16g103410 Amaranthus hybridus HOM05D004604 ORTHO05D005744 9.1e-153 544.7 602 51.2
vmacro06977 Vaccinium macrocarpon HOM05D004604 ORTHO05D005744 1.7e-151 540.4 597 51.4
Eucgr.J00230 Eucalyptus grandis HOM05D004604 ORTHO05D005744 3.8e-151 539.3 570 52.3
EL10Ac2g04814 Beta vulgaris HOM05D004604 ORTHO05D005744 5.0e-151 538.9 600 50.7
A10p30660 Brassica napus HOM05D004604 ORTHO05D005744 5.0e-151 538.9 579 51.1
AT5G05700 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 6.5e-151 538.5 617 49.8
AL6G15600 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 1.5e-150 537.3 592 49.8
Haze_17213 Corylus avellana HOM05D004604 ORTHO05D005744 1.9e-150 537.0 590 51.9
Carub.0003s1055 Capsella rubella HOM05D004604 ORTHO05D005744 4.2e-150 535.8 588 50.2
BraA10t45107Z Brassica rapa HOM05D004604 ORTHO05D005744 5.5e-150 535.4 579 50.8
Cpa.g.sc19.187 Carica papaya HOM05D004604 ORTHO05D005744 7.2e-150 535.0 572 53.0
AL3G22760 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 4.0e-148 529.3 519 54.3
BcaB06g25636 Brassica carinata HOM05D004604 ORTHO05D005744 1.2e-147 527.7 510 54.1
BcaC05g29392 Brassica carinata HOM05D004604 ORTHO05D005744 1.5e-147 527.3 505 53.9
C05p56850 Brassica napus HOM05D004604 ORTHO05D005744 1.5e-147 527.3 505 53.9
BolC5t34349H Brassica oleracea HOM05D004604 ORTHO05D005744 1.5e-147 527.3 505 53.9
FAN03G0827 Fragaria x ananassa HOM05D004604 ORTHO05D005744 2.0e-147 526.9 619 48.9
Sp3g09520 Schrenkiella parvula HOM05D004604 ORTHO05D005744 2.6e-147 526.6 572 51.2
DCAR_028567 Daucus carota HOM05D004604 ORTHO05D005744 4.4e-147 525.8 547 52.1
A05p38060 Brassica napus HOM05D004604 ORTHO05D005744 2.8e-146 523.1 504 53.4
BraA05t22598Z Brassica rapa HOM05D004604 ORTHO05D005744 2.8e-146 523.1 504 53.4
AUR62022867 Chenopodium quinoa HOM05D004604 ORTHO05D005744 3.1e-145 519.6 581 48.5
C09p71140 Brassica napus HOM05D004604 ORTHO05D005744 7.0e-145 518.5 582 49.7
Aa31LG11G6730 Aethionema arabicum HOM05D004604 ORTHO05D005744 1.2e-144 517.7 582 47.9
ATR0618G256 Amborella trichopoda HOM05D004604 ORTHO05D005744 5.9e-144 515.4 624 48.1
BolC9t59876H Brassica oleracea HOM05D004604 ORTHO05D005744 2.2e-143 513.5 582 49.5
Cpa.g.sc19.188 Carica papaya HOM05D004604 ORTHO05D005744 6.5e-143 511.9 501 55.3
arahy.Tifrunner.gnm1.ann1.C37ZT5 Arachis hypogaea HOM05D004604 ORTHO05D005744 2.1e-141 506.9 525 51.8
Aa31LG3G4550 Aethionema arabicum HOM05D004604 ORTHO05D005744 1.8e-140 503.8 528 51.9
Hund15948 Selenicereus undatus HOM05D004604 ORTHO05D005744 3.0e-140 503.1 592 49.0
Os05g0446800 Oryza sativa ssp. japonica HOM05D004604 ORTHO05D005744 8.8e-140 501.5 597 47.6
CARHR207580 Cardamine hirsuta HOM05D004604 ORTHO05D005744 1.5e-139 500.7 556 49.1
Sed0013753 Sechium edule HOM05D004604 ORTHO05D005744 4.4e-139 499.2 497 52.9
Haze_17214 Corylus avellana HOM05D004604 ORTHO05D005744 1.7e-138 497.3 618 48.5
CDE03G0502 Ceratophyllum demersum HOM05D004604 ORTHO05D005744 2.2e-138 496.9 571 48.2
CARHR085800 Cardamine hirsuta HOM05D004604 ORTHO05D005744 8.3e-138 495.0 578 49.8
BcaC06g32278 Brassica carinata HOM05D004604 ORTHO05D005744 1.8e-137 493.8 580 48.3
Eucgr.J00232 Eucalyptus grandis HOM05D004604 ORTHO05D005744 1.0e-135 488.0 522 51.7
Zm00001eb348230 Zea mays HOM05D004604 ORTHO05D005744 3.8e-135 486.1 532 50.9
Carub.0006s0459 Capsella rubella HOM05D004604 ORTHO05D005744 6.1e-133 478.8 526 49.6
Actinidia29693 Actinidia chinensis HOM05D004604 ORTHO05D005744 4.0e-132 476.1 583 46.7
SEGI_40640 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 2.0e-131 473.8 571 48.7
Gohir.D10G247400 Gossypium hirsutum HOM05D004604 ORTHO05D005744 1.1e-129 468.0 473 54.1
Peaxi162Scf01208g00144 Petunia axillaris HOM05D004604 ORTHO05D005744 4.0e-124 449.5 478 52.9
HanXRQChr06g0172261 Helianthus annuus HOM05D004604 ORTHO05D005744 1.2e-123 448.0 486 51.0
Eucgr.J00227 Eucalyptus grandis HOM05D004604 ORTHO05D005744 2.7e-120 436.8 422 55.5
SEGI_28443 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 1.5e-115 421.0 481 48.6
SEGI_33236 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 1.5e-115 421.0 481 48.6
Sc11g0007180 Simmondsia chinensis HOM05D004604 ORTHO05D005744 3.4e-115 419.9 489 49.9
Mapoly0067s0057 Marchantia polymorpha HOM05D004604 ORTHO05D005744 2.4e-113 413.7 502 46.8
Pp3c3_24950 Physcomitrium patens HOM05D004604 ORTHO05D005744 2.4e-113 413.7 625 40.3
AUR62012235 Chenopodium quinoa HOM05D004604 ORTHO05D005744 1.1e-110 404.8 545 43.5
AagrBONN_evm.TU.Sc2ySwM_117.2751 Anthoceros agrestis HOM05D004604 ORTHO05D005744 2.1e-109 400.6 590 41.2
AT3G11240 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 1.0e-103 381.7 359 55.2
SMO118G0549 Selaginella moellendorffii HOM05D004604 ORTHO05D005744 2.0e-99 367.5 501 44.1
Thhalv10013820m.g Eutrema salsugineum HOM05D004604 ORTHO05D005744 1.1e-89 335.1 349 50.1
Actinidia33931 Actinidia chinensis HOM05D004604 ORTHO05D005744 1.9e-89 334.3 603 39.3
COL.COLO4_25696 Corchorus olitorius HOM05D004604 ORTHO05D005744 4.6e-88 329.7 611 39.3
CBR_g49483 Chara braunii HOM05D004604 ORTHO05D005744 2.9e-74 283.9 511 35.2
PRCOL_00002395 Prasinoderma coloniale HOM05D004604 ORTHO05D005744 1.3e-71 275.0 599 33.1
HPP92_018034 Vanilla planifolia HOM05D004604 ORTHO05D005744 1.4e-57 228.4 290 47.9
arahy.Tifrunner.gnm1.ann1.3RRJ97 Arachis hypogaea HOM05D004604 ORTHO05D005744 1.7e-50 204.9 352 38.4
MCO15G553 Micromonas commoda HOM05D004604 ORTHO05D005744 8.5e-50 202.6 172 56.4
Cre13.g580600 Chlamydomonas reinhardtii HOM05D004604 ORTHO05D005744 3.3e-46 190.7 211 45.5
PSO339G5386 Papaver somniferum HOM05D004604 ORTHO05D005744 4.2e-41 173.7 128 66.4
Cfa022588 Carpinus fangiana HOM05D004604 ORTHO05D005744 3.5e-27 127.5 157 40.1
Peaxi162Scf01208g00156 Petunia axillaris HOM05D004604 ORTHO05D005744 6.8e-23 113.2 64 79.7
HPP92_018033 Vanilla planifolia HOM05D004604 ORTHO05D005744 2.4e-12 78.2 126 42.1
CBR_g49485 Chara braunii HOM05D000019 ORTHO05D000048 2.8e-08 64.7 39 66.7
SEGI_38081 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 2.0e-06 58.5 63 50.8
Oeu025172.2 Olea europaea HOM05D004604 ORTHO05D005744 7.5e-06 56.6 61 54.1


User provided reference genes

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