Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.21245 Avicennia marina HOM05D005258 ORTHO05D006525 9.6e-264 912.9 452 100.0
SGA_v2.0_scaffold80G25693 Striga asiatica HOM05D005258 ORTHO05D006525 1.4e-206 723.0 507 74.4
Migut.D00841 Erythranthe guttata HOM05D005258 ORTHO05D006525 2.8e-202 708.8 464 76.5
SalBow6G5766 Salvia bowleyana HOM05D005258 ORTHO05D006525 3.7e-191 671.8 461 73.3
Dinv12244 Davidia involucrata HOM05D005258 ORTHO05D006525 5.2e-169 598.2 382 75.7
SalBow6G5836 Salvia bowleyana HOM05D005258 ORTHO05D006525 5.2e-169 598.2 427 72.1
Dinv09684 Davidia involucrata HOM05D005258 ORTHO05D006525 1.5e-168 596.7 382 75.1
CSS0008764 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 1.4e-166 590.1 466 65.9
CSS0033097 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 1.4e-166 590.1 465 66.0
Nitab4.5_0015019g0010 Nicotiana tabacum HOM05D005258 ORTHO05D006525 2.7e-165 585.9 453 64.9
QL04p095946 Quercus lobata HOM05D005258 ORTHO05D006525 6.0e-165 584.7 470 64.7
Actinidia01232 Actinidia chinensis HOM05D005258 ORTHO05D006525 3.0e-164 582.4 469 64.0
Prupe.6G046100 Prunus persica HOM05D005258 ORTHO05D006525 1.1e-163 580.5 452 64.4
Eucgr.B04012 Eucalyptus grandis HOM05D005258 ORTHO05D006525 1.5e-163 580.1 379 72.8
Solyc06g082370.4 Solanum lycopersicum HOM05D005258 ORTHO05D006525 1.5e-163 580.1 453 64.0
PGSC0003DMG400030379 Solanum tuberosum HOM05D005258 ORTHO05D006525 2.5e-163 579.3 453 64.2
Duzib168G0041 Durio zibethinus HOM05D005258 ORTHO05D006525 5.6e-163 578.2 380 72.9
Sopen06g033760 Solanum pennellii HOM05D005258 ORTHO05D006525 5.6e-163 578.2 453 63.8
GSVIVG01024619001 Vitis vinifera HOM05D005258 ORTHO05D006525 7.3e-163 577.8 384 72.9
Glyma.18G056300 Glycine max HOM05D005258 ORTHO05D006525 1.3e-162 577.0 424 68.2
unitig_747.g21452 Utricularia gibba HOM05D005258 ORTHO05D006525 2.1e-162 576.2 454 65.4
Phvul.006G074900 Phaseolus vulgaris HOM05D005258 ORTHO05D006525 2.8e-162 575.9 380 72.9
MELO3C020493.2 Cucumis melo HOM05D005258 ORTHO05D006525 3.6e-162 575.5 457 64.8
Glyma.11G163000 Glycine max HOM05D005258 ORTHO05D006525 1.4e-161 573.5 448 65.0
FvH4_3g39930 Fragaria vesca HOM05D005258 ORTHO05D006525 2.4e-161 572.8 457 64.1
CsaV3_1G036740 Cucumis sativus L. HOM05D005258 ORTHO05D006525 3.1e-161 572.4 457 64.6
Cc01_g14990 Coffea canephora HOM05D005258 ORTHO05D006525 4.0e-161 572.0 466 62.4
MD11G1060300 Malus domestica HOM05D005258 ORTHO05D006525 5.3e-161 571.6 452 63.7
Rhsim11G0040500 Rhododendron simsii HOM05D005258 ORTHO05D006525 5.3e-161 571.6 462 63.9
Sed0015134 Sechium edule HOM05D005258 ORTHO05D006525 5.3e-161 571.6 463 64.1
Gohir.A08G203600 Gossypium hirsutum HOM05D005258 ORTHO05D006525 2.0e-160 569.7 380 72.6
Cpa.g.sc53.44 Carica papaya HOM05D005258 ORTHO05D006525 3.4e-160 568.9 431 66.4
Lj2C1095G3 Lonicera japonica HOM05D005258 ORTHO05D006525 3.4e-160 568.9 460 64.1
Manes.18G136600 Manihot esculenta HOM05D005258 ORTHO05D006525 3.4e-160 568.9 444 64.6
Lj2g0020421 Lotus japonicus HOM05D005258 ORTHO05D006525 4.5e-160 568.5 380 71.8
CDE06G2080 Ceratophyllum demersum HOM05D005258 ORTHO05D006525 7.6e-160 567.8 362 73.5
CsaV3_6G022490 Cucumis sativus L. HOM05D005258 ORTHO05D006525 7.6e-160 567.8 457 63.9
MD03G1058000 Malus domestica HOM05D005258 ORTHO05D006525 2.9e-159 565.8 452 63.1
CANSAT54G1230 Cannabis sativa HOM05D005258 ORTHO05D006525 4.9e-159 565.1 456 63.4
Ciclev10001075m.g Citrus clementina HOM05D005258 ORTHO05D006525 4.9e-159 565.1 384 71.1
Lj6g0021320 Lotus japonicus HOM05D005258 ORTHO05D006525 8.4e-159 564.3 380 71.1
TWI75G0534 Tripterygium wilfordii HOM05D005258 ORTHO05D006525 8.4e-159 564.3 468 62.0
vmacro00112 Vaccinium macrocarpon HOM05D005258 ORTHO05D006525 1.1e-158 563.9 477 63.3
Gohir.D08G220900 Gossypium hirsutum HOM05D005258 ORTHO05D006525 1.9e-158 563.1 380 71.3
Nitab4.5_0002768g0050 Nicotiana tabacum HOM05D005258 ORTHO05D006525 1.9e-158 563.1 453 62.3
arahy.Tifrunner.gnm1.ann1.0U7N6T Arachis hypogaea HOM05D005258 ORTHO05D006525 4.2e-158 562.0 473 61.5
Ca_15017_v3 Cicer arietinum L. HOM05D005258 ORTHO05D006525 4.2e-158 562.0 452 63.7
Potri.013G153900 Populus trichocarpa HOM05D005258 ORTHO05D006525 7.1e-158 561.2 428 65.0
THA.LOC104812325 Tarenaya hassleriana HOM05D005258 ORTHO05D006525 9.3e-158 560.8 380 71.1
Lalb_Chr18g0051461 Lupinus albus HOM05D005258 ORTHO05D006525 1.6e-157 560.1 447 64.0
Psat5g152360 Pisum sativum HOM05D005258 ORTHO05D006525 1.6e-157 560.1 448 62.9
Sabra13G0123700 Salix brachista HOM05D005258 ORTHO05D006525 2.7e-157 559.3 438 63.7
PGR102G1249 Punica granatum HOM05D005258 ORTHO05D006525 3.5e-157 558.9 459 62.5
arahy.Tifrunner.gnm1.ann1.R5QLIS Arachis hypogaea HOM05D005258 ORTHO05D006525 4.6e-157 558.5 452 63.7
Medtr3g031280 Medicago truncatula HOM05D005258 ORTHO05D006525 6.0e-157 558.1 389 69.9
CARHR017340 Cardamine hirsuta HOM05D005258 ORTHO05D006525 1.8e-156 556.6 429 66.2
Gorai.004G234600 Gossypium raimondii HOM05D005258 ORTHO05D006525 6.7e-156 554.7 379 70.7
Lsat_1_v5_gn_9_14481 Lactuca sativa HOM05D005258 ORTHO05D006525 6.7e-156 554.7 395 68.4
AT1G16870 Arabidopsis thaliana HOM05D005258 ORTHO05D006525 8.7e-156 554.3 381 71.1
THA.LOC104813633 Tarenaya hassleriana HOM05D005258 ORTHO05D006525 1.9e-155 553.1 432 64.4
FAN11G2675 Fragaria x ananassa HOM05D005258 ORTHO05D006525 3.3e-155 552.4 457 62.6
Sp1g15010 Schrenkiella parvula HOM05D005258 ORTHO05D006525 5.6e-155 551.6 398 68.3
HanXRQChr08g0228541 Helianthus annuus HOM05D005258 ORTHO05D006525 9.6e-155 550.8 471 61.1
AL1G29040 Arabidopsis lyrata HOM05D005258 ORTHO05D006525 2.1e-154 549.7 381 70.6
Aqoxy2G00760 Aquilegia oxysepala HOM05D005258 ORTHO05D006525 2.4e-153 546.2 418 63.9
Sc21g0004960 Simmondsia chinensis HOM05D005258 ORTHO05D006525 2.4e-153 546.2 447 61.7
BcaC05g25543 Brassica carinata HOM05D005258 ORTHO05D006525 4.0e-153 545.4 380 69.5
Carub.0001s1661 Capsella rubella HOM05D005258 ORTHO05D006525 5.3e-153 545.0 435 64.4
A06p12780 Brassica napus HOM05D005258 ORTHO05D006525 9.0e-153 544.3 382 69.4
BcaB02g06669 Brassica carinata HOM05D005258 ORTHO05D006525 2.0e-152 543.1 381 69.0
Peaxi162Scf00390g00538 Petunia axillaris HOM05D005258 ORTHO05D006525 1.3e-151 540.4 453 62.3
ECA247G3025 Erigeron canadensis HOM05D005258 ORTHO05D006525 1.7e-151 540.0 381 68.5
MBI18_g09779_MAGBIO Magnolia biondii HOM05D005258 ORTHO05D006525 1.1e-150 537.3 365 70.1
Atru.chr1.2577 Acer truncatum HOM05D005258 ORTHO05D006525 1.9e-150 536.6 448 61.8
Thhalv10007506m.g Eutrema salsugineum HOM05D005258 ORTHO05D006525 3.2e-150 535.8 381 69.0
C05p15090 Brassica napus HOM05D005258 ORTHO05D006525 7.1e-150 534.6 393 67.2
TAR624G0064 Trochodendron aralioides HOM05D005258 ORTHO05D006525 8.7e-148 527.7 441 63.9
PSO384G2283 Papaver somniferum HOM05D005258 ORTHO05D006525 1.9e-147 526.6 425 61.9
PSO339G6698 Papaver somniferum HOM05D005258 ORTHO05D006525 2.5e-147 526.2 392 65.3
ClCG03G000160 Citrullus lanatus HOM05D005258 ORTHO05D006525 1.8e-145 520.0 479 59.3
Lj2g0010469 Lotus japonicus HOM05D005258 ORTHO05D006525 3.1e-145 519.2 389 66.3
Nn6g33319 Nelumbo nucifera HOM05D005258 ORTHO05D006525 1.3e-143 513.8 335 73.4
HPP92_026488 Vanilla planifolia HOM05D005258 ORTHO05D006525 1.3e-143 513.8 429 61.3
Os07g0202900 Oryza sativa ssp. japonica HOM05D005258 ORTHO05D006525 1.9e-142 510.0 378 62.7
TPR.G25689 Trifolium pratense HOM05D005258 ORTHO05D006525 2.5e-142 509.6 334 73.1
Haze_24429 Corylus avellana HOM05D005258 ORTHO05D006525 5.5e-142 508.4 418 62.7
CiPaw.14G053300 Carya illinoinensis HOM05D005258 ORTHO05D006525 1.3e-140 503.8 417 62.6
Zm00001eb116240 Zea mays HOM05D005258 ORTHO05D006525 6.7e-140 501.5 452 57.5
Hund19201 Selenicereus undatus HOM05D005258 ORTHO05D006525 3.7e-138 495.7 404 61.6
DCAR_028395 Daucus carota HOM05D005258 ORTHO05D006525 1.4e-134 483.8 420 60.5
EL10Ac7g15872 Beta vulgaris HOM05D005258 ORTHO05D006525 4.6e-133 478.8 397 60.2
ATR0681G175 Amborella trichopoda HOM05D005258 ORTHO05D006525 6.7e-132 474.9 415 60.0
Cfa011791 Carpinus fangiana HOM05D005258 ORTHO05D006525 2.8e-130 469.5 450 58.2
Aa31LG7G1300 Aethionema arabicum HOM05D005258 ORTHO05D006525 1.1e-129 467.6 381 63.3
Nitab4.5_0002494g0040 Nicotiana tabacum HOM05D005258 ORTHO05D006525 1.8e-129 466.8 444 55.9
HPP92_014227 Vanilla planifolia HOM05D005258 ORTHO05D006525 2.5e-126 456.4 317 67.2
CiPaw.13G067700 Carya illinoinensis HOM05D005258 ORTHO05D006525 1.3e-122 444.1 454 54.4
Dinv28705 Davidia involucrata HOM05D005258 ORTHO05D006525 1.5e-120 437.2 281 75.1
AUR62036231 Chenopodium quinoa HOM05D005258 ORTHO05D006525 2.8e-114 416.4 365 59.2
AUR62009714 Chenopodium quinoa HOM05D005258 ORTHO05D006525 9.4e-110 401.4 418 52.6
Ah.08g215410 Amaranthus hybridus HOM05D005258 ORTHO05D006525 2.1e-109 400.2 379 55.7
SEGI_17098 Sequoiadendron giganteum HOM05D005258 ORTHO05D006525 6.1e-109 398.7 357 53.8
Rhsim06G0112000 Rhododendron simsii HOM05D005258 ORTHO05D006525 1.3e-103 380.9 420 52.1
Thecc.09G359400 Theobroma cacao HOM05D005258 ORTHO05D006525 3.1e-97 359.8 256 68.4
COL.COLO4_11171 Corchorus olitorius HOM05D005258 ORTHO05D006525 9.1e-97 358.2 457 45.7
CAN.G1095.27 Capsicum annuum HOM05D005258 ORTHO05D006525 2.3e-92 343.6 217 73.7
TAR633G1809 Trochodendron aralioides HOM05D005258 ORTHO05D006525 9.8e-91 338.2 262 66.8
VMungo0540G0790 Vigna mungo HOM05D005258 ORTHO05D006525 4.1e-89 332.8 209 76.1
Mapoly0019s0020 Marchantia polymorpha HOM05D005258 ORTHO05D006525 1.1e-86 324.7 358 46.9
Pp3c11_22290 Physcomitrium patens HOM05D005258 ORTHO05D006525 1.7e-82 310.8 362 47.2
QL01p025810 Quercus lobata HOM05D005258 ORTHO05D006525 3.0e-79 300.1 326 54.3
BraA06t24438Z Brassica rapa HOM05D005258 ORTHO05D006525 5.2e-76 289.3 172 80.2
AagrBONN_evm.TU.Sc2ySwM_117.1403 Anthoceros agrestis HOM05D005258 ORTHO05D006525 2.0e-75 287.3 375 41.9
FAN25G3091 Fragaria x ananassa HOM05D005258 ORTHO05D006525 7.5e-75 285.4 298 53.0
RcHm_v2.0_Chr5g0071921 Rosa chinensis HOM05D005258 ORTHO05D006525 9.2e-73 278.5 175 77.1
SMO353G0383 Selaginella moellendorffii HOM05D005258 ORTHO05D006525 2.0e-67 260.8 274 47.1
CAN.G1095.26 Capsicum annuum HOM05D005258 ORTHO05D000750 3.4e-67 260.0 325 46.8
RcHm_v2.0_Chr5g0071911 Rosa chinensis HOM05D005258 ORTHO05D006525 2.2e-66 257.3 247 54.3
VMungo0540G2447 Vigna mungo HOM05D005258 ORTHO05D006525 2.9e-66 256.9 253 56.1
FAN16G1300 Fragaria x ananassa HOM05D005258 ORTHO05D006525 3.7e-66 256.5 247 55.1
FAN21G1740 Fragaria x ananassa HOM05D005258 ORTHO05D006525 1.5e-62 244.6 247 53.8
BolC5t30224H Brassica oleracea HOM05D005258 ORTHO05D006525 4.0e-52 209.9 172 61.0
CBR_g40648 Chara braunii HOM05D005258 ORTHO05D006525 9.0e-52 208.8 295 41.4
BcaC07g38819 Brassica carinata HOM05D005258 ORTHO05D006525 3.3e-46 190.3 278 43.5
TAR628G0009 Trochodendron aralioides HOM05D005258 ORTHO05D006525 2.8e-45 187.2 160 62.5
C08p17580 Brassica napus HOM05D005258 ORTHO05D006525 3.0e-39 167.2 95 83.2
QL01p025812 Quercus lobata HOM05D005258 ORTHO05D006525 4.2e-33 146.7 88 75.0
BolC8t49383H Brassica oleracea HOM05D005258 ORTHO05D006525 4.8e-29 133.3 75 85.3
PRCOL_00003540 Prasinoderma coloniale HOM05D005258 ORTHO05D006525 1.5e-27 128.3 364 31.6
MBI11_g20619_MAGBIO Magnolia biondii HOM05D000666 ORTHO05D001431 5.5e-25 119.8 140 50.0
CAN.G403.12 Capsicum annuum HOM05D005258 ORTHO05D006525 7.9e-24 115.9 155 44.5
TAR628G1613 Trochodendron aralioides HOM05D005258 ORTHO05D006525 3.9e-23 113.6 236 36.0
BraA08t35049Z Brassica rapa HOM05D005258 ORTHO05D006525 1.9e-22 111.3 67 77.6
Lsat_1_v5_gn_3_46641 Lactuca sativa HOM05D005258 ORTHO05D006525 3.8e-18 97.1 124 44.4
CAN.G1538.6 Capsicum annuum HOM05D005258 ORTHO05D006525 1.0e-15 89.0 88 56.8
MCO01G624 Micromonas commoda HOM05D005258 ORTHO05D006525 3.0e-15 87.4 349 25.2
CSS0045112 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 3.9e-15 87.0 55 74.5
SalBow6G4442 Salvia bowleyana HOM05D005258 ORTHO05D010875 2.9e-10 70.9 39 82.1
Cre03.g176700 Chlamydomonas reinhardtii HOM05D005258 ORTHO05D006525 1.4e-09 68.6 125 32.0
Lsat_1_v5_gn_3_46621 Lactuca sativa HOM05D005258 ORTHO05D006525 2.5e-09 67.8 65 53.8
A08p31260 Brassica napus HOM05D005258 ORTHO05D006525 3.6e-08 63.9 49 65.3
Lsat_1_v5_gn_7_20901 Lactuca sativa HOM05D005258 ORTHO05D006525 3.6e-08 63.9 38 68.4
SalBow1G0607 Salvia bowleyana HOM05D005258 ORTHO05D362423 1.4e-07 62.0 77 42.9


User provided reference genes

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