Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.21221 Avicennia marina HOM05D005166 ORTHO05D006120 0.0e+00 1087.8 802 100.0
Migut.D00877 Erythranthe guttata HOM05D005166 ORTHO05D006120 4.1e-132 476.5 921 53.7
SGA_v2.0_scaffold111G31544 Striga asiatica HOM05D005166 ORTHO05D006120 3.7e-125 453.4 902 53.1
Nitab4.5_0001999g0010 Nicotiana tabacum HOM05D005166 ORTHO05D006120 3.0e-82 310.8 951 48.1
Dinv34287 Davidia involucrata HOM05D005166 ORTHO05D006120 1.8e-79 301.6 903 50.7
Hma1.2p1_1664F.1_g296420 Hydrangea macrophylla HOM05D005166 ORTHO05D006120 1.9e-76 291.6 908 51.4
Dinv42991 Davidia involucrata HOM05D005166 ORTHO05D006120 2.1e-75 288.1 852 54.2
Dinv43106 Davidia involucrata HOM05D005166 ORTHO05D006120 2.1e-75 288.1 852 54.2
Duzib168G0713 Durio zibethinus HOM05D005166 ORTHO05D006120 1.3e-74 285.4 839 54.4
Thecc.09G315500 Theobroma cacao HOM05D005166 ORTHO05D006120 8.7e-74 282.7 300 59.3
CSS0046995 Camellia sinensis var. sinensis HOM05D005166 ORTHO05D006120 3.3e-73 280.8 882 49.1
Nitab4.5_0005248g0020 Nicotiana tabacum HOM05D005166 ORTHO05D006120 3.3e-73 280.8 972 40.3
vmacro03027 Vaccinium macrocarpon HOM05D005166 ORTHO05D006120 7.3e-73 279.6 338 55.0
GSVIVG01024906001 Vitis vinifera HOM05D005166 ORTHO05D006120 7.3e-73 279.6 295 61.4
Cc01_g13350 Coffea canephora HOM05D005166 ORTHO05D006120 1.3e-72 278.9 228 69.7
PGSC0003DMG400027986 Solanum tuberosum HOM05D005166 ORTHO05D006120 4.8e-72 276.9 950 43.8
Dinv17047 Davidia involucrata HOM05D005166 ORTHO05D006120 2.4e-71 274.6 855 54.2
COL.COLO4_18578 Corchorus olitorius HOM05D005166 ORTHO05D006120 4.4e-70 270.4 228 68.4
Manes.01G169300 Manihot esculenta HOM05D005166 ORTHO05D006120 9.9e-70 269.2 301 57.5
Gorai.013G262700 Gossypium raimondii HOM05D005166 ORTHO05D006120 3.8e-69 267.3 210 71.0
Gohir.D13G232000 Gossypium hirsutum HOM05D005166 ORTHO05D006120 4.9e-69 266.9 210 71.0
MD11G1094700 Malus domestica HOM05D005166 ORTHO05D006120 6.4e-69 266.5 883 49.7
Gohir.A13G226600 Gossypium hirsutum HOM05D005166 ORTHO05D006120 8.4e-69 266.2 210 70.5
Haze_24170 Corylus avellana HOM05D005166 ORTHO05D006120 1.1e-68 265.8 304 61.8
MD03G1086100 Malus domestica HOM05D005166 ORTHO05D006120 2.4e-68 264.6 865 50.1
Haze_24175 Corylus avellana HOM05D005166 ORTHO05D006120 3.2e-68 264.2 305 61.3
Sabra09G0026100 Salix brachista HOM05D005166 ORTHO05D006120 5.4e-68 263.5 290 56.9
Nn2g13459 Nelumbo nucifera HOM05D005166 ORTHO05D006120 7.1e-68 263.1 301 56.1
Atru.chr3.3993_Atru.chr3.3994 Acer truncatum HOM05D005166 ORTHO05D006120 9.3e-68 262.7 949 47.9
CAN.G3.46 Capsicum annuum HOM05D005166 ORTHO05D006120 1.3e-66 258.8 845 46.5
Lalb_Chr01g0003471 Lupinus albus HOM05D005166 ORTHO05D006120 1.3e-66 258.8 326 51.8
CDE07G0344 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 7.3e-65 253.1 305 55.1
TAR633G1610 Trochodendron aralioides HOM05D005166 ORTHO05D006120 1.3e-64 252.3 994 43.0
Sopen09g013470 Solanum pennellii HOM05D005166 ORTHO05D006120 2.1e-64 251.5 951 46.2
Peaxi162Scf00676g00220 Petunia axillaris HOM05D005166 ORTHO05D006120 2.8e-64 251.1 982 41.2
CsaV3_1G034540 Cucumis sativus L. HOM05D005166 ORTHO05D006120 1.4e-63 248.8 235 62.6
Psat7g210320 Pisum sativum HOM05D005166 ORTHO05D006120 1.8e-63 248.4 319 54.2
Glyma.12G059700 Glycine max HOM05D005166 ORTHO05D006120 2.4e-63 248.1 300 56.3
Nn2g11213 Nelumbo nucifera HOM05D005166 ORTHO05D006120 2.4e-63 248.1 921 44.3
Potri.009G036900 Populus trichocarpa HOM05D005166 ORTHO05D006120 3.1e-63 247.7 912 49.0
Hund04921 Selenicereus undatus HOM05D005166 ORTHO05D006120 4.0e-63 247.3 148 83.8
TAR636G0138 Trochodendron aralioides HOM05D005166 ORTHO05D006120 5.3e-63 246.9 922 46.0
Lalb_Chr03g0026441 Lupinus albus HOM05D005166 ORTHO05D006120 9.0e-63 246.1 323 54.5
PSO339G5769 Papaver somniferum HOM05D005166 ORTHO05D006120 1.2e-62 245.7 282 55.3
Prupe.6G070300 Prunus persica HOM05D005166 ORTHO05D006120 1.2e-62 245.7 883 48.2
Rhsim13G0077000 Rhododendron simsii HOM05D005166 ORTHO05D006120 1.2e-62 245.7 901 49.6
Lj3g0025501 Lotus japonicus HOM05D005166 ORTHO05D006120 1.5e-62 245.4 234 62.0
MBI14_g11598_MAGBIO Magnolia biondii HOM05D005166 ORTHO05D006120 1.5e-62 245.4 916 46.1
Aqoxy2G02310 Aquilegia oxysepala HOM05D005166 ORTHO05D006120 2.0e-62 245.0 286 55.6
arahy.Tifrunner.gnm1.ann1.L8ZXQA Arachis hypogaea HOM05D005166 ORTHO05D006120 2.6e-62 244.6 233 61.4
Sabra16G0148400 Salix brachista HOM05D005166 ORTHO05D006120 2.6e-62 244.6 220 67.3
Ca_20616_v3 Cicer arietinum L. HOM05D005166 ORTHO05D006120 3.4e-62 244.2 229 62.0
ECA247G0723 Erigeron canadensis HOM05D005166 ORTHO05D006120 4.5e-62 243.8 300 55.0
Ah.08g220070 Amaranthus hybridus HOM05D005166 ORTHO05D006120 5.8e-62 243.4 291 55.0
Glyma.11G136000 Glycine max HOM05D005166 ORTHO05D006120 5.8e-62 243.4 242 61.2
Sed0011931 Sechium edule HOM05D005166 ORTHO05D006120 5.8e-62 243.4 242 60.7
HanXRQChr01g0001871 Helianthus annuus HOM05D005166 ORTHO05D006120 1.3e-61 242.3 284 56.0
Phvul.011G061700 Phaseolus vulgaris HOM05D005166 ORTHO05D006120 1.7e-61 241.9 246 61.8
Aa31LG5G7110 Aethionema arabicum HOM05D005166 ORTHO05D006120 2.2e-61 241.5 239 60.3
VMungo1127G2033 Vigna mungo HOM05D005166 ORTHO05D006120 3.8e-61 240.7 246 61.0
AL4G23770 Arabidopsis lyrata HOM05D005166 ORTHO05D006120 4.9e-61 240.4 307 52.1
AUR62001736 Chenopodium quinoa HOM05D005166 ORTHO05D006120 8.4e-61 239.6 147 83.0
Lsat_1_v5_gn_9_24820 Lactuca sativa HOM05D005166 ORTHO05D006120 8.4e-61 239.6 241 62.2
TAR636G0020 Trochodendron aralioides HOM05D005166 ORTHO05D006120 1.4e-60 238.8 919 44.6
QL01p029224 Quercus lobata HOM05D005166 ORTHO05D006120 1.9e-60 238.4 919 46.8
Lalb_Chr19g0137981 Lupinus albus HOM05D005166 ORTHO05D006120 2.4e-60 238.0 307 51.8
EL10Ac7g16070 Beta vulgaris HOM05D005166 ORTHO05D006120 3.2e-60 237.7 231 65.8
Ciclev10030390m.g Citrus clementina HOM05D005166 ORTHO05D006120 3.2e-60 237.7 855 49.6
ATR0559G187 Amborella trichopoda HOM05D005166 ORTHO05D006120 5.5e-60 236.9 309 54.7
Os03g0270200 Oryza sativa ssp. japonica HOM05D005166 ORTHO05D006120 5.5e-60 236.9 148 81.8
Zm00001eb012100 Zea mays HOM05D005166 ORTHO05D006120 6.0e-59 233.4 302 51.7
HanXRQChr08g0237471 Helianthus annuus HOM05D005166 ORTHO05D006120 3.0e-58 231.1 278 56.5
THA.LOC104800686 Tarenaya hassleriana HOM05D005166 ORTHO05D006120 5.1e-58 230.3 244 56.1
SEGI_12829 Sequoiadendron giganteum HOM05D005166 ORTHO05D006120 6.7e-58 229.9 146 79.5
arahy.Tifrunner.gnm1.ann1.SP769B Arachis hypogaea HOM05D005166 ORTHO05D006120 8.7e-58 229.6 267 55.1
Carub.0004s1023 Capsella rubella HOM05D005166 ORTHO05D006120 8.7e-58 229.6 142 81.0
DCAR_005942 Daucus carota HOM05D005166 ORTHO05D006120 1.1e-57 229.2 316 54.4
Thhalv10016250m.g Eutrema salsugineum HOM05D005166 ORTHO05D006120 1.9e-57 228.4 207 63.3
Solyc09g030390.3 Solanum lycopersicum HOM05D005166 ORTHO05D006120 1.9e-57 228.4 943 46.6
HPP92_012608 Vanilla planifolia HOM05D005166 ORTHO05D006120 2.5e-57 228.0 140 80.0
Sp4g12020 Schrenkiella parvula HOM05D005166 ORTHO05D006120 3.3e-57 227.6 218 59.2
AagrBONN_evm.TU.Sc2ySwM_117.3439 Anthoceros agrestis HOM05D005166 ORTHO05D006120 1.6e-56 225.3 148 75.0
AT2G29210 Arabidopsis thaliana HOM05D005166 ORTHO05D006120 1.6e-56 225.3 262 53.8
AUR62020041 Chenopodium quinoa HOM05D005166 ORTHO05D006120 1.6e-56 225.3 135 84.4
HanXRQChr08g0237371 Helianthus annuus HOM05D005166 ORTHO05D006120 1.8e-55 221.9 291 54.0
Medtr4g064740 Medicago truncatula HOM05D005166 ORTHO05D006120 1.2e-54 219.2 951 45.4
TPR.G23607 Trifolium pratense HOM05D005166 ORTHO05D006120 2.0e-54 218.4 943 47.0
CiPaw.13G089200 Carya illinoinensis HOM05D005166 ORTHO05D006120 2.6e-54 218.0 907 45.4
Potri.001G244600 Populus trichocarpa HOM05D005166 ORTHO05D006120 2.6e-54 218.0 861 47.7
Pp3c3_30240 Physcomitrium patens HOM05D005166 ORTHO05D006120 3.4e-54 217.6 265 53.6
Pp3c3_30241 Physcomitrium patens HOM05D005166 ORTHO05D006120 3.4e-54 217.6 265 53.6
Sc12g0001240 Simmondsia chinensis HOM05D005166 ORTHO05D006120 7.6e-54 216.5 286 55.6
RcHm_v2.0_Chr5g0066361 Rosa chinensis HOM05D005166 ORTHO05D006120 1.0e-53 216.1 870 47.0
Cpa.g.sc81.97 Carica papaya HOM05D005166 ORTHO05D006120 6.5e-53 213.4 151 73.5
Pp3c10_18390 Physcomitrium patens HOM05D005166 ORTHO05D006120 3.2e-52 211.1 296 50.0
unitig_746.g26715 Utricularia gibba HOM05D005166 ORTHO05D006120 9.3e-52 209.5 160 73.1
A05p16120 Brassica napus HOM05D005166 ORTHO05D006120 1.6e-51 208.8 221 56.1
C04p21810 Brassica napus HOM05D005166 ORTHO05D006120 2.1e-51 208.4 304 48.7
Mapoly0063s0002 Marchantia polymorpha HOM05D005166 ORTHO05D006120 1.3e-50 205.7 131 76.3
BolC4t23701H Brassica oleracea HOM05D005166 ORTHO05D006120 3.9e-50 204.1 306 47.1
SHI05908 Sapria himalayana HOM05D005166 ORTHO05D006120 3.9e-50 204.1 267 48.7
BcaB02g10233 Brassica carinata HOM05D005166 ORTHO05D006120 8.7e-50 203.0 304 49.3
Eucgr.B02307 Eucalyptus grandis HOM05D005166 ORTHO05D006120 1.9e-49 201.8 895 44.6
FAN25G3327 Fragaria x ananassa HOM05D005166 ORTHO05D006120 1.9e-49 201.8 883 40.1
BraA05t20522Z Brassica rapa HOM05D005166 ORTHO05D006120 2.5e-49 201.4 315 47.3
CBR_g50691 Chara braunii HOM05D005166 ORTHO05D006120 9.6e-49 199.5 156 64.7
FAN16G3680 Fragaria x ananassa HOM05D005166 ORTHO05D006120 6.3e-48 196.8 869 40.6
SHI31247 Sapria himalayana HOM05D005166 ORTHO05D006120 2.4e-47 194.9 151 66.9
PGR102G2168 Punica granatum HOM05D005166 ORTHO05D006120 5.3e-47 193.7 903 47.2
SMO144G0189 Selaginella moellendorffii HOM05D005166 ORTHO05D006120 2.0e-46 191.8 134 71.6
CDE06G0141 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 4.5e-46 190.7 201 56.2
FvH4_3g36942 Fragaria vesca HOM05D005166 ORTHO05D006120 1.0e-45 189.5 882 39.9
FAN21G1054 Fragaria x ananassa HOM05D005166 ORTHO05D006120 2.2e-45 188.3 877 44.1
FAN11G2353 Fragaria x ananassa HOM05D005166 ORTHO05D006120 3.8e-45 187.6 882 41.7
Sed0000001 Sechium edule HOM05D005166 ORTHO05D006120 1.8e-39 168.7 242 46.7
Actinidia33768 Actinidia chinensis HOM05D005166 ORTHO05D006120 1.2e-35 156.0 225 52.4
SHI33547 Sapria himalayana HOM05D005166 ORTHO05D006120 9.7e-33 146.4 188 46.8
BcaB05g22029 Brassica carinata HOM05D005166 ORTHO05D006120 3.1e-31 141.4 118 61.0
SalBow6G2010 Salvia bowleyana HOM05D005166 ORTHO05D006120 3.1e-31 141.4 419 40.1
SHI32778 Sapria himalayana HOM05D005166 ORTHO05D006120 1.4e-28 132.5 134 56.7
SHI25075 Sapria himalayana HOM05D005166 ORTHO05D006120 9.4e-28 129.8 113 60.2
Oeu053892.1 Olea europaea HOM05D005166 ORTHO05D006120 2.7e-27 128.3 204 61.3
SHI07724 Sapria himalayana HOM05D005166 ORTHO05D006120 1.8e-26 125.6 167 47.3
Cre16.g678050 Chlamydomonas reinhardtii HOM05D005166 ORTHO05D006120 3.1e-23 114.8 150 46.0
MCO11G283 Micromonas commoda HOM05D005166 ORTHO05D006120 1.7e-21 109.0 128 46.9
Zm00001eb397830 Zea mays HOM05D005166 ORTHO05D006120 2.0e-17 95.5 67 76.1
Zm00001eb284680 Zea mays HOM05D005166 ORTHO05D006120 7.0e-15 87.0 133 49.6
Zm00001eb222410 Zea mays HOM05D005166 ORTHO05D006120 3.8e-13 81.3 54 74.1
HanXRQChr08g0237461 Helianthus annuus HOM05D005166 ORTHO05D006120 9.8e-09 66.6 50 70.0
PRCOL_00003490 Prasinoderma coloniale HOM05D005166 ORTHO05D006120 3.1e-07 61.6 108 34.3
Cpa.g.sc81.96 Carica papaya HOM05D005166 ORTHO05D006120 9.1e-07 60.1 411 34.1


User provided reference genes

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