Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.21143 Avicennia marina HOM05D002419 ORTHO05D005441 7.0e-101 370.5 179 100.0
SalBow3G4510 Salvia bowleyana HOM05D002419 ORTHO05D005441 6.4e-86 320.9 176 81.8
SGA_v2.0_scaffold61G21167 Striga asiatica HOM05D002419 ORTHO05D005441 1.1e-85 320.1 176 85.2
Migut.D02183 Erythranthe guttata HOM05D002419 ORTHO05D005441 1.9e-85 319.3 176 84.1
Ciclev10029381m.g Citrus clementina HOM05D002419 ORTHO05D005441 7.3e-82 307.4 175 78.9
Manes.04G024900 Manihot esculenta HOM05D002419 ORTHO05D005441 6.2e-81 304.3 174 80.5
Rhsim08G0250900 Rhododendron simsii HOM05D002419 ORTHO05D005441 8.1e-81 303.9 169 81.7
Cc04_g16270 Coffea canephora HOM05D002419 ORTHO05D005441 1.8e-80 302.8 167 82.6
Dinv32788 Davidia involucrata HOM05D002419 ORTHO05D005441 6.9e-80 300.8 175 78.9
Cfa010014 Carpinus fangiana HOM05D002419 ORTHO05D005441 1.2e-79 300.1 176 79.0
GSVIVG01025135001 Vitis vinifera HOM05D002419 ORTHO05D005441 1.2e-79 300.1 166 80.7
Nitab4.5_0002129g0060 Nicotiana tabacum HOM05D002419 ORTHO05D005441 1.5e-79 299.7 174 77.0
Peaxi162Scf00389g00950 Petunia axillaris HOM05D002419 ORTHO05D005441 2.0e-79 299.3 171 77.2
QL01p037218 Quercus lobata HOM05D002419 ORTHO05D005441 2.6e-79 298.9 173 78.0
TAR623G1637 Trochodendron aralioides HOM05D002419 ORTHO05D005441 4.4e-79 298.1 170 79.4
PGR119G1746 Punica granatum HOM05D002419 ORTHO05D005441 5.8e-79 297.7 170 78.2
Atru.chr3.3690 Acer truncatum HOM05D002419 ORTHO05D005441 7.6e-79 297.4 170 78.2
Eucgr.J00952 Eucalyptus grandis HOM05D002419 ORTHO05D005441 9.9e-79 297.0 175 74.9
Gorai.004G058900 Gossypium raimondii HOM05D002419 ORTHO05D005441 9.9e-79 297.0 172 79.1
CSS0025233 Camellia sinensis var. sinensis HOM05D002419 ORTHO05D005441 1.3e-78 296.6 166 79.5
Gohir.D08G057700 Gossypium hirsutum HOM05D002419 ORTHO05D005441 1.7e-78 296.2 172 78.5
arahy.Tifrunner.gnm1.ann1.LS5S44 Arachis hypogaea HOM05D002419 ORTHO05D005441 2.2e-78 295.8 174 77.6
Gohir.A08G047300 Gossypium hirsutum HOM05D002419 ORTHO05D005441 2.2e-78 295.8 172 79.1
arahy.Tifrunner.gnm1.ann1.0PI3PU Arachis hypogaea HOM05D002419 ORTHO05D005441 2.9e-78 295.4 174 77.6
Cpa.g.sc8.318 Carica papaya HOM05D002419 ORTHO05D005441 2.9e-78 295.4 168 79.8
arahy.Tifrunner.gnm1.ann1.P2RDRN Arachis hypogaea HOM05D002419 ORTHO05D005441 3.8e-78 295.0 174 77.6
CiPaw.13G107100 Carya illinoinensis HOM05D002419 ORTHO05D005441 3.8e-78 295.0 176 77.3
Thecc.01G220900 Theobroma cacao HOM05D002419 ORTHO05D005441 3.8e-78 295.0 174 76.4
ClCG02G020950 Citrullus lanatus HOM05D002419 ORTHO05D005441 4.9e-78 294.7 175 74.9
CDE02G0876 Ceratophyllum demersum HOM05D002419 ORTHO05D005441 8.4e-78 293.9 171 74.9
DCAR_006045 Daucus carota HOM05D002419 ORTHO05D005441 8.4e-78 293.9 177 73.4
Lsat_1_v5_gn_6_26220 Lactuca sativa HOM05D002419 ORTHO05D005441 8.4e-78 293.9 171 76.6
Oeu037230.1 Olea europaea HOM05D002419 ORTHO05D005441 8.4e-78 293.9 171 78.9
COL.COLO4_15624 Corchorus olitorius HOM05D002419 ORTHO05D005441 1.1e-77 293.5 174 76.4
PSO339G1519 Papaver somniferum HOM05D002419 ORTHO05D005441 1.4e-77 293.1 171 76.0
Sopen11g030060 Solanum pennellii HOM05D002419 ORTHO05D005441 1.4e-77 293.1 170 76.5
MELO3C025747.2 Cucumis melo HOM05D002419 ORTHO05D005441 1.9e-77 292.7 175 74.9
PGSC0003DMG400027404 Solanum tuberosum HOM05D002419 ORTHO05D005441 1.9e-77 292.7 170 75.9
Duzib138G1011 Durio zibethinus HOM05D002419 ORTHO05D005441 2.4e-77 292.4 169 76.9
Potri.006G228500 Populus trichocarpa HOM05D002419 ORTHO05D005441 3.2e-77 292.0 177 75.1
Solyc11g072410.2 Solanum lycopersicum HOM05D002419 ORTHO05D005441 3.2e-77 292.0 170 75.9
Hma1.2p1_0958F.1_g241480 Hydrangea macrophylla HOM05D002419 ORTHO05D005441 4.2e-77 291.6 174 76.4
LjContig00564g0008442 Lotus japonicus HOM05D002419 ORTHO05D005441 4.2e-77 291.6 171 76.6
AUR62019559 Chenopodium quinoa HOM05D002419 ORTHO05D005441 5.4e-77 291.2 166 78.3
CsaV3_6G021640 Cucumis sativus L. HOM05D002419 ORTHO05D005441 5.4e-77 291.2 175 74.3
Potri.012G109400 Populus trichocarpa HOM05D002419 ORTHO05D005441 5.4e-77 291.2 172 76.2
CANSAT54G0974 Cannabis sativa HOM05D002419 ORTHO05D005441 9.3e-77 290.4 174 76.4
PSO541G3116 Papaver somniferum HOM05D002419 ORTHO05D005441 1.2e-76 290.0 171 75.4
PSO675G4527 Papaver somniferum HOM05D002419 ORTHO05D005441 1.2e-76 290.0 171 75.4
Prupe.1G205700 Prunus persica HOM05D002419 ORTHO05D005441 1.2e-76 290.0 166 78.9
Aqoxy5G03165 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 1.6e-76 289.7 171 76.6
Prupe.8G100300 Prunus persica HOM05D002419 ORTHO05D005441 1.6e-76 289.7 166 79.5
TWI31G0524 Tripterygium wilfordii HOM05D002419 ORTHO05D005441 1.6e-76 289.7 175 76.6
Sed0002828 Sechium edule HOM05D005177 ORTHO05D005441 2.1e-76 289.3 173 75.1
Ah.13g070120 Amaranthus hybridus HOM05D002419 ORTHO05D005441 2.7e-76 288.9 170 77.1
EL10Ac5g12738 Beta vulgaris HOM05D002419 ORTHO05D005441 3.5e-76 288.5 170 77.6
Lalb_Chr10g0105941 Lupinus albus HOM05D002419 ORTHO05D005441 3.5e-76 288.5 169 75.7
MBI18_g31602_MAGBIO Magnolia biondii HOM05D002419 ORTHO05D005441 3.5e-76 288.5 171 76.0
Hund28200 Selenicereus undatus HOM05D002419 ORTHO05D005441 3.5e-76 288.5 167 77.8
Hund28212 Selenicereus undatus HOM05D002419 ORTHO05D005441 3.5e-76 288.5 167 77.8
Duzib211G0640 Durio zibethinus HOM05D002419 ORTHO05D005441 6.0e-76 287.7 174 73.6
Medtr5g087910 Medicago truncatula HOM05D002419 ORTHO05D005441 6.0e-76 287.7 170 75.9
TPR.G1260 Trifolium pratense HOM05D002419 ORTHO05D005441 7.8e-76 287.3 170 76.5
CDE06G2731 Ceratophyllum demersum HOM05D002419 ORTHO05D005441 1.0e-75 287.0 171 73.7
TPR.G11323 Trifolium pratense HOM05D002419 ORTHO05D005441 1.0e-75 287.0 167 76.6
Actinidia03746 Actinidia chinensis HOM05D005177 ORTHO05D006175 1.3e-75 286.6 172 75.6
MD10G1078500 Malus domestica HOM05D002419 ORTHO05D005441 1.3e-75 286.6 170 76.5
Phvul.004G086200 Phaseolus vulgaris HOM05D002419 ORTHO05D005441 2.3e-75 285.8 168 75.6
Duzib211G0283 Durio zibethinus HOM05D002419 ORTHO05D005441 3.0e-75 285.4 174 73.6
Rhsim01G0220200 Rhododendron simsii HOM05D002419 ORTHO05D005441 3.0e-75 285.4 202 68.3
VMungo0245G0001 Vigna mungo HOM05D002419 ORTHO05D005441 3.0e-75 285.4 168 75.6
Aqoxy5G00056 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 3.9e-75 285.0 171 75.4
Glyma.02G076000 Glycine max HOM05D002419 ORTHO05D005441 3.9e-75 285.0 168 76.2
ECA233G1138 Erigeron canadensis HOM05D002419 ORTHO05D005441 5.1e-75 284.6 171 73.7
Glyma.16G158000 Glycine max HOM05D002419 ORTHO05D005441 6.6e-75 284.3 168 75.6
Sc06g0010580 Simmondsia chinensis HOM05D002419 ORTHO05D005441 6.6e-75 284.3 170 74.7
Ca_01433_v3 Cicer arietinum L. HOM05D002419 ORTHO05D005441 8.7e-75 283.9 172 74.4
ATR0564G250 Amborella trichopoda HOM05D002419 ORTHO05D005441 1.5e-74 283.1 166 74.7
FvH4_5g29720 Fragaria vesca HOM05D002419 ORTHO05D005441 1.5e-74 283.1 166 74.7
FAN18G2638 Fragaria x ananassa HOM05D002419 ORTHO05D005441 1.5e-74 283.1 166 74.7
Oeu005909.2 Olea europaea HOM05D002419 ORTHO05D005441 1.5e-74 283.1 163 81.0
HanXRQChr13g0401511 Helianthus annuus HOM05D002419 ORTHO05D005441 1.9e-74 282.7 171 74.9
Ca_11594_v3 Cicer arietinum L. HOM05D002419 ORTHO05D005441 3.3e-74 282.0 171 74.3
Haze_23372 Corylus avellana HOM05D002419 ORTHO05D005441 3.3e-74 282.0 187 71.7
FAN13G2429 Fragaria x ananassa HOM05D002419 ORTHO05D005441 4.3e-74 281.6 166 74.7
RcHm_v2.0_Chr7g0223211 Rosa chinensis HOM05D002419 ORTHO05D005441 4.3e-74 281.6 166 74.7
VMungo1080G0265 Vigna mungo HOM05D002419 ORTHO05D005441 5.6e-74 281.2 171 73.7
BcaC02g12517 Brassica carinata HOM05D002419 ORTHO05D005441 9.6e-74 280.4 169 74.6
FAN04G1346 Fragaria x ananassa HOM05D002419 ORTHO05D005441 4.8e-73 278.1 166 74.1
Lj1g0007529 Lotus japonicus HOM05D002419 ORTHO05D005441 4.8e-73 278.1 169 75.1
Sp6g21950 Schrenkiella parvula HOM05D002419 ORTHO05D005441 4.8e-73 278.1 167 76.0
THA.LOC104814839 Tarenaya hassleriana HOM05D002419 ORTHO05D005441 4.8e-73 278.1 169 74.6
Zm00001eb305840 Zea mays HOM05D002419 ORTHO05D005441 4.8e-73 278.1 174 72.4
BcaB08g36334 Brassica carinata HOM05D002419 ORTHO05D005441 8.1e-73 277.3 167 76.0
Os07g0412400 Oryza sativa ssp. japonica HOM05D002419 ORTHO05D005441 8.1e-73 277.3 171 73.1
BcaC04g19694 Brassica carinata HOM05D002419 ORTHO05D005441 5.3e-72 274.6 167 75.4
CAN.G1839.8 Capsicum annuum HOM05D002419 ORTHO05D005441 6.9e-72 274.2 170 71.8
Psat2g022600 Pisum sativum HOM05D002419 ORTHO05D005441 6.9e-72 274.2 166 74.7
SEGI_39229 Sequoiadendron giganteum HOM05D002419 ORTHO05D005441 9.0e-72 273.9 171 73.7
THA.LOC104799485 Tarenaya hassleriana HOM05D002419 ORTHO05D005441 1.5e-71 273.1 165 76.4
BcaB01g04654 Brassica carinata HOM05D002419 ORTHO05D005441 2.6e-71 272.3 167 73.7
C03p12900 Brassica napus HOM05D002419 ORTHO05D005441 2.6e-71 272.3 168 73.8
BolC4t26562H Brassica oleracea HOM05D002419 ORTHO05D005441 3.4e-71 271.9 168 73.2
BraA03t10433Z Brassica rapa HOM05D002419 ORTHO05D005441 4.5e-71 271.6 167 73.1
Carub.0003s2777 Capsella rubella HOM05D002419 ORTHO05D005441 5.8e-71 271.2 167 72.5
Thhalv10014819m.g Eutrema salsugineum HOM05D002419 ORTHO05D005441 5.8e-71 271.2 167 73.1
Nitab4.5_0000106g0060 Nicotiana tabacum HOM05D002419 ORTHO05D005441 5.8e-71 271.2 170 72.4
BolC3t13754H Brassica oleracea HOM05D002419 ORTHO05D005441 7.6e-71 270.8 168 73.8
FAN08G2817 Fragaria x ananassa HOM05D002419 ORTHO05D005441 7.6e-71 270.8 162 73.5
AL8G36960 Arabidopsis lyrata HOM05D002419 ORTHO05D005441 1.3e-70 270.0 172 70.9
AUR62037871 Chenopodium quinoa HOM05D002419 ORTHO05D005441 1.3e-70 270.0 154 79.2
A03p11170 Brassica napus HOM05D002419 ORTHO05D005441 2.2e-70 269.2 167 72.5
HPP92_005091 Vanilla planifolia HOM05D002419 ORTHO05D005441 8.4e-70 267.3 171 69.6
vmacro14463 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 1.1e-69 266.9 234 58.1
CARHR274010 Cardamine hirsuta HOM05D002419 ORTHO05D005441 2.4e-69 265.8 176 70.5
A10p17550 Brassica napus HOM05D002419 ORTHO05D005441 5.4e-69 264.6 161 77.0
C09p52960 Brassica napus HOM05D002419 ORTHO05D005441 5.4e-69 264.6 161 77.0
BolC9t58170H Brassica oleracea HOM05D002419 ORTHO05D005441 5.4e-69 264.6 161 77.0
BcaC08g46529 Brassica carinata HOM05D002419 ORTHO05D005441 7.1e-69 264.2 168 72.0
Peaxi162Scf00101g01011 Petunia axillaris HOM05D002419 ORTHO05D005441 9.3e-69 263.8 170 68.8
BraA10t43836Z Brassica rapa HOM05D002419 ORTHO05D005441 2.7e-68 262.3 161 76.4
TAR369G1020 Trochodendron aralioides HOM05D002419 ORTHO05D005441 4.3e-66 255.0 173 71.1
Aa31LG1G12400 Aethionema arabicum HOM05D002419 ORTHO05D005441 5.6e-66 254.6 151 78.8
AT5G60340 Arabidopsis thaliana HOM05D002419 ORTHO05D005441 7.4e-66 254.2 167 69.5
AagrBONN_evm.TU.Sc2ySwM_344.3388 Anthoceros agrestis HOM05D002419 ORTHO05D005441 2.8e-65 252.3 171 67.3
PGSC0003DMG400007496 Solanum tuberosum HOM05D002419 ORTHO05D005441 1.1e-64 250.4 176 67.0
Pp3c13_9300 Physcomitrium patens HOM05D002419 ORTHO05D005441 6.9e-64 247.7 168 64.9
Sopen06g031710 Solanum pennellii HOM05D002419 ORTHO05D005441 1.5e-63 246.5 170 66.5
CBR_g24285 Chara braunii HOM05D002419 ORTHO05D005441 4.9e-62 241.5 164 65.9
Haze_23913 Corylus avellana HOM05D002419 ORTHO05D005441 1.0e-59 233.8 168 65.5
Mapoly0012s0053 Marchantia polymorpha HOM05D002419 ORTHO05D005441 3.0e-59 232.3 164 63.4
Cre02.g081550 Chlamydomonas reinhardtii HOM05D002419 ORTHO05D005441 1.1e-58 230.3 165 63.6
SMO367G1131 Selaginella moellendorffii HOM05D002419 ORTHO05D005441 1.5e-58 229.9 161 65.8
SHI24546 Sapria himalayana HOM05D002419 ORTHO05D005441 7.6e-55 217.6 168 58.9
PRCOL_00000283 Prasinoderma coloniale HOM05D002419 ORTHO05D005441 1.2e-52 210.3 167 55.7
Nn1g08940 Nelumbo nucifera HOM05D002419 ORTHO05D005441 1.2e-47 193.7 107 78.5
Nitab4.5_0001802g0070 Nicotiana tabacum HOM05D006502 ORTHO05D007704 3.4e-47 192.2 114 73.7
Glyma.10G187200 Glycine max HOM05D002419 ORTHO05D005441 2.9e-46 189.1 123 70.7
unitig_736.g22419 Utricularia gibba HOM05D002419 ORTHO05D005441 3.2e-45 185.7 176 54.0
Nn5g28456 Nelumbo nucifera HOM05D002419 ORTHO05D005441 4.2e-45 185.3 111 75.7
Aqoxy6G01924 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 1.6e-44 183.3 109 74.3
Dinv24670 Davidia involucrata HOM05D002419 ORTHO05D005441 6.7e-43 177.9 104 78.8
CAN.G553.11 Capsicum annuum HOM05D002419 ORTHO05D005441 1.5e-42 176.8 104 74.0
MCO01G137 Micromonas commoda HOM05D002419 ORTHO05D005441 1.5e-42 176.8 172 49.4
Solyc06g075310.4 Solanum lycopersicum HOM05D002419 ORTHO05D005441 1.7e-41 173.3 111 73.0
CAN.G6400.1 Capsicum annuum HOM05D002419 ORTHO05D005441 1.1e-40 170.6 103 71.8
CAN.G1001.14 Capsicum annuum HOM05D002419 ORTHO05D005441 5.9e-39 164.9 106 68.9
CAN.G1001.18 Capsicum annuum HOM05D002419 ORTHO05D005441 5.9e-39 164.9 106 68.9
AagrBONN_evm.TU.Sc2ySwM_228.4581 Anthoceros agrestis HOM05D002419 ORTHO05D005441 2.2e-38 162.9 111 69.4
QL08p054546 Quercus lobata HOM05D002419 ORTHO05D005441 7.2e-37 157.9 169 51.5
Aa31LG4G12680 Aethionema arabicum HOM05D002419 ORTHO05D005441 9.4e-37 157.5 85 85.9
CAN.G352.38 Capsicum annuum HOM05D002419 ORTHO05D005441 7.0e-32 141.4 173 46.8
arahy.Tifrunner.gnm1.ann1.VN8392 Arachis hypogaea HOM05D002419 ORTHO05D005441 8.0e-28 127.9 75 73.3
arahy.Tifrunner.gnm1.ann1.9EY0GB Arachis hypogaea HOM05D002419 ORTHO05D005441 1.1e-26 124.0 140 52.9
Haze_26704 Corylus avellana HOM05D002419 ORTHO05D164840 2.6e-26 122.9 162 38.3
Peaxi162Scf00101g00114 Petunia axillaris HOM05D002419 ORTHO05D005441 9.7e-26 120.9 123 51.2
vmacro14073 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 1.0e-19 100.9 63 69.8
HPP92_005089 Vanilla planifolia HOM05D002419 ORTHO05D005441 1.5e-18 97.1 66 68.2
Cfa024491 Carpinus fangiana HOM05D002419 ORTHO05D126234 5.4e-16 88.6 181 28.7
PGSC0003DMG400008253 Solanum tuberosum HOM05D002419 ORTHO05D030681 1.7e-14 83.6 63 58.7
PGSC0003DMG400035128 Solanum tuberosum HOM05D002419 ORTHO05D030681 8.5e-14 81.3 63 58.7
SHI24547 Sapria himalayana HOM05D002419 ORTHO05D005441 1.1e-13 80.9 79 45.6
PGSC0003DMG400039134 Solanum tuberosum HOM05D002419 ORTHO05D030681 6.1e-12 75.1 64 59.4
Actinidia21172 Actinidia chinensis HOM05D002419 ORTHO05D055483 1.5e-10 70.5 35 85.7
vmacro14074 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 8.3e-09 64.7 48 66.7


User provided reference genes

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