Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.21061 Avicennia marina HOM05D003745 ORTHO05D004215 2.4e-63 245.4 125 100.0
GSVIVG01031398001 Vitis vinifera HOM05D003745 ORTHO05D004215 8.0e-19 97.4 97 55.7
CSS0050359 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 1.8e-18 96.3 123 43.1
Dinv29425 Davidia involucrata HOM05D003745 ORTHO05D004215 1.2e-17 93.6 95 50.5
CSS0049961 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 5.8e-17 91.3 96 52.1
SalBow6G4256 Salvia bowleyana HOM05D003745 ORTHO05D004215 1.7e-16 89.7 97 53.6
Actinidia07207 Actinidia chinensis HOM05D003745 ORTHO05D004215 2.9e-16 89.0 86 54.7
TWI79G1201 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 7.0e-15 84.3 96 51.0
CiPaw.13G141100 Carya illinoinensis HOM05D003745 ORTHO05D004215 9.2e-15 84.0 97 50.5
MSTRG.17729 Avicennia marina HOM05D003745 ORTHO05D004215 1.2e-14 83.6 103 52.4
vmacro03277 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 2.1e-14 82.8 90 50.0
vmacro23109 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 2.1e-14 82.8 90 50.0
Thecc.09G291500 Theobroma cacao HOM05D003745 ORTHO05D004215 3.5e-14 82.0 121 43.8
EL10Ac9g21084 Beta vulgaris HOM05D003745 ORTHO05D004215 4.6e-14 81.6 92 51.1
CSS0006810 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 4.6e-14 81.6 94 48.9
CiPaw.14G103500 Carya illinoinensis HOM05D003745 ORTHO05D004215 6.0e-14 81.3 96 47.9
Actinidia37099 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.7e-13 79.7 98 49.0
TWI75G0377 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 2.3e-13 79.3 96 50.0
Gorai.006G109700 Gossypium raimondii HOM05D003745 ORTHO05D004215 3.9e-13 78.6 91 46.2
Rhsim13G0105100 Rhododendron simsii HOM05D003745 ORTHO05D004215 3.9e-13 78.6 98 49.0
Sabra04G0127200 Salix brachista HOM05D003745 ORTHO05D004215 5.1e-13 78.2 96 49.0
Actinidia24179 Actinidia chinensis HOM05D003745 ORTHO05D004215 6.6e-13 77.8 82 52.4
Gohir.A07G107300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 6.6e-13 77.8 83 48.2
Actinidia35448 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.5e-12 76.6 96 46.9
TPR.G5649 Trifolium pratense HOM05D003745 ORTHO05D004215 1.5e-12 76.6 84 48.8
Glyma.12G181700 Glycine max HOM05D003745 ORTHO05D004215 1.9e-12 76.3 95 46.3
Duzib150G0771 Durio zibethinus HOM05D003745 ORTHO05D004215 3.3e-12 75.5 91 45.1
Oeu001652.1 Olea europaea HOM05D003745 ORTHO05D004215 3.3e-12 75.5 90 50.0
Gohir.A09G093200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 4.3e-12 75.1 112 42.9
Glyma.13G319200 Glycine max HOM05D003745 ORTHO05D004215 5.6e-12 74.7 95 47.4
Gorai.001G119600 Gossypium raimondii HOM05D003745 ORTHO05D004215 5.6e-12 74.7 83 47.0
Manes.11G157100 Manihot esculenta HOM05D003745 ORTHO05D004215 7.3e-12 74.3 98 43.9
Potri.004G188200 Populus trichocarpa HOM05D003745 ORTHO05D004215 7.3e-12 74.3 96 46.9
DCAR_006146 Daucus carota HOM05D003745 ORTHO05D004215 9.5e-12 73.9 87 46.0
QL01p013692 Quercus lobata HOM05D003745 ORTHO05D004215 9.5e-12 73.9 95 43.2
Thecc.05G081300 Theobroma cacao HOM05D003745 ORTHO05D004215 9.5e-12 73.9 94 44.7
Gohir.D07G111300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.2e-11 73.6 83 45.8
Cfa010081 Carpinus fangiana HOM05D003745 ORTHO05D004215 2.1e-11 72.8 86 47.7
COL.COLO4_19298 Corchorus olitorius HOM05D003745 ORTHO05D004215 2.1e-11 72.8 91 45.1
FvH4_3g29900 Fragaria vesca HOM05D003745 ORTHO05D004215 2.1e-11 72.8 96 45.8
RcHm_v2.0_Chr5g0055241 Rosa chinensis HOM05D003745 ORTHO05D004215 2.1e-11 72.8 95 44.2
Sc12g0004160 Simmondsia chinensis HOM05D003745 ORTHO05D004215 2.1e-11 72.8 89 47.2
Dinv21253 Davidia involucrata HOM05D003745 ORTHO05D004215 2.8e-11 72.4 94 41.5
Hund00782 Selenicereus undatus HOM05D003745 ORTHO05D004215 2.8e-11 72.4 100 42.0
Dinv19830 Davidia involucrata HOM05D003745 ORTHO05D004215 3.6e-11 72.0 133 38.3
Duzib168G0884 Durio zibethinus HOM05D003745 ORTHO05D004215 3.6e-11 72.0 91 46.2
Gohir.D09G093000 Gossypium hirsutum HOM05D003745 ORTHO05D004215 3.6e-11 72.0 91 45.1
Lj3g0011252 Lotus japonicus HOM05D003745 ORTHO05D004215 3.6e-11 72.0 94 44.7
CiPaw.09G008800 Carya illinoinensis HOM05D003745 ORTHO05D004215 4.7e-11 71.6 88 47.7
Ciclev10003706m.g Citrus clementina HOM05D003745 ORTHO05D004215 4.7e-11 71.6 98 45.9
Cc01_g09790 Coffea canephora HOM05D003745 ORTHO05D004215 4.7e-11 71.6 95 45.3
MD11G1157500 Malus domestica HOM05D003745 ORTHO05D004215 4.7e-11 71.6 86 47.7
Psat7g007360 Pisum sativum HOM05D003745 ORTHO05D004215 4.7e-11 71.6 86 46.5
Migut.N02515 Erythranthe guttata HOM05D003745 ORTHO05D004215 8.1e-11 70.9 91 48.4
FAN11G3796 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.1e-10 70.5 96 44.8
FAN21G0140 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.1e-10 70.5 96 44.8
Nn2g14004 Nelumbo nucifera HOM05D003745 ORTHO05D004215 1.8e-10 69.7 97 45.4
SalBow3G0913 Salvia bowleyana HOM05D003745 ORTHO05D004215 3.1e-10 68.9 91 46.2
Aqoxy2G01397 Aquilegia oxysepala HOM05D003745 ORTHO05D004215 4.0e-10 68.6 103 45.6
Glyma.10G066400 Glycine max HOM05D003745 ORTHO05D004215 4.0e-10 68.6 88 47.7
Nitab4.5_0010833g0010 Nicotiana tabacum HOM05D003745 ORTHO05D004215 4.0e-10 68.6 86 44.2
Peaxi162Scf00789g00618 Petunia axillaris HOM05D003745 ORTHO05D004215 4.0e-10 68.6 91 45.1
FAN16G1639 Fragaria x ananassa HOM05D003745 ORTHO05D004215 5.2e-10 68.2 96 43.8
TAR369G1123 Trochodendron aralioides HOM05D003745 ORTHO05D004215 5.2e-10 68.2 98 42.9
MD03G1134700 Malus domestica HOM05D003745 ORTHO05D004215 6.8e-10 67.8 96 47.9
Ciclev10029683m.g Citrus clementina HOM05D003745 ORTHO05D004215 1.2e-09 67.0 85 45.9
ECA233G0462 Erigeron canadensis HOM05D003745 ORTHO05D004215 1.2e-09 67.0 99 42.4
Oeu050182.1 Olea europaea HOM05D003745 ORTHO05D004215 1.2e-09 67.0 97 45.4
Potri.009G148900 Populus trichocarpa HOM05D003745 ORTHO05D004215 1.2e-09 67.0 91 44.0
SalBow3G0501 Salvia bowleyana HOM05D003745 ORTHO05D004215 1.5e-09 66.6 82 46.3
TAR633G1338 Trochodendron aralioides HOM05D003745 ORTHO05D004215 1.5e-09 66.6 78 46.2
Phvul.005G127200 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 2.0e-09 66.2 88 43.2
CAN.G919.7 Capsicum annuum HOM05D003745 ORTHO05D004215 2.6e-09 65.9 99 44.4
Gohir.D01G198200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.6e-09 65.9 83 43.4
Peaxi162Scf00157g00066 Petunia axillaris HOM05D003745 ORTHO05D004215 2.6e-09 65.9 98 41.8
Gorai.002G242400 Gossypium raimondii HOM05D003745 ORTHO05D004215 3.4e-09 65.5 83 43.4
Lj5g0022060 Lotus japonicus HOM05D003745 ORTHO05D004215 3.4e-09 65.5 88 46.6
Lsat_1_v5_gn_6_41120 Lactuca sativa HOM05D003745 ORTHO05D004215 4.4e-09 65.1 61 49.2
Rhsim03G0081200 Rhododendron simsii HOM05D003745 ORTHO05D004215 5.8e-09 64.7 94 40.4
Duzib106G0076 Durio zibethinus HOM05D003745 ORTHO05D004215 7.5e-09 64.3 92 44.6
Lalb_Chr22g0350641 Lupinus albus HOM05D003745 ORTHO05D004215 7.5e-09 64.3 105 41.0
Atru.chr3.3378 Acer truncatum HOM05D003745 ORTHO05D004215 9.9e-09 63.9 93 46.2
Atru.chr8.1631 Acer truncatum HOM05D003745 ORTHO05D004215 9.9e-09 63.9 89 44.9
Lalb_Chr14g0374201 Lupinus albus HOM05D003745 ORTHO05D004215 1.3e-08 63.5 125 36.8
Rhsim01G0208400 Rhododendron simsii HOM05D003745 ORTHO05D004215 1.3e-08 63.5 57 57.9
Sp5g16440 Schrenkiella parvula HOM05D003745 ORTHO05D004215 1.3e-08 63.5 86 38.4
TAR636G1780 Trochodendron aralioides HOM05D003745 ORTHO05D004215 1.3e-08 63.5 62 51.6
arahy.Tifrunner.gnm1.ann1.X8LT49 Arachis hypogaea HOM05D003745 ORTHO05D004215 1.7e-08 63.2 84 46.4
Gohir.A01G209100 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.7e-08 63.2 83 43.4
Medtr2g084855 Medicago truncatula HOM05D003745 ORTHO05D004215 1.7e-08 63.2 85 44.7
Phvul.007G223101 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 1.7e-08 63.2 87 40.2
Solyc06g074540.4 Solanum lycopersicum HOM05D003745 ORTHO05D004215 1.7e-08 63.2 94 43.6
PGSC0003DMG400002682 Solanum tuberosum HOM05D003745 ORTHO05D004215 1.7e-08 63.2 85 43.5
GSVIVG01033785001 Vitis vinifera HOM05D003745 ORTHO05D004215 1.7e-08 63.2 82 48.8
Haze_23447 Corylus avellana HOM05D003745 ORTHO05D004215 2.2e-08 62.8 92 43.5
QL07p040518 Quercus lobata HOM05D003745 ORTHO05D004215 2.2e-08 62.8 81 43.2
Duzib106G0171 Durio zibethinus HOM05D003745 ORTHO05D004215 2.9e-08 62.4 94 41.5
Gohir.A04G066114 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.9e-08 62.4 59 50.8
PGSC0003DMG400007123 Solanum tuberosum HOM05D003745 ORTHO05D004215 3.7e-08 62.0 94 43.6
TPR.G32386 Trifolium pratense HOM05D003745 ORTHO05D004215 3.7e-08 62.0 86 43.0
CANSAT54G1542 Cannabis sativa HOM05D003745 ORTHO05D004215 4.9e-08 61.6 71 57.7
Duzib093G0672 Durio zibethinus HOM05D003745 ORTHO05D004215 4.9e-08 61.6 91 40.7
Duzib128G0603 Durio zibethinus HOM05D003745 ORTHO05D004215 4.9e-08 61.6 94 40.4
Cc06_g05290 Coffea canephora HOM05D003745 ORTHO05D004215 6.4e-08 61.2 77 42.9
Sopen06g031010 Solanum pennellii HOM05D003745 ORTHO05D004215 6.4e-08 61.2 87 44.8
FvH4_6g17920 Fragaria vesca HOM05D003745 ORTHO05D004215 8.3e-08 60.8 85 41.2
FAN14G5394 Fragaria x ananassa HOM05D003745 ORTHO05D004215 8.3e-08 60.8 85 41.2
Nn6g35042 Nelumbo nucifera HOM05D003745 ORTHO05D004215 8.3e-08 60.8 36 72.2
Medtr1g061120 Medicago truncatula HOM05D003745 ORTHO05D004215 1.1e-07 60.5 89 38.2
Sopen09g003840 Solanum pennellii HOM05D003745 ORTHO05D004215 1.1e-07 60.5 75 41.3
Actinidia11335 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.4e-07 60.1 92 40.2
Carub.0005s1042 Capsella rubella HOM05D003745 ORTHO05D004215 1.4e-07 60.1 83 38.6
Carub.0015s0003 Capsella rubella HOM05D003745 ORTHO05D004215 1.4e-07 60.1 83 38.6
Nitab4.5_0000663g0130 Nicotiana tabacum HOM05D003745 ORTHO05D004215 1.4e-07 60.1 81 40.7
arahy.Tifrunner.gnm1.ann1.T88YYN Arachis hypogaea HOM05D003745 ORTHO05D004215 1.9e-07 59.7 84 45.2
Cpa.g.sc5.75 Carica papaya HOM05D003745 ORTHO05D004215 4.1e-07 58.5 88 40.9
FAN02G0871 Fragaria x ananassa HOM05D003745 ORTHO05D004215 4.1e-07 58.5 37 67.6
Glyma.13G151500 Glycine max HOM05D003745 ORTHO05D004215 4.1e-07 58.5 86 39.5
Ciclev10013197m.g Citrus clementina HOM05D003745 ORTHO05D004215 5.4e-07 58.2 84 45.2
FAN05G2107 Fragaria x ananassa HOM05D003745 ORTHO05D004215 5.4e-07 58.2 85 40.0
FAN05G2814 Fragaria x ananassa HOM05D003745 ORTHO05D004215 5.4e-07 58.2 85 40.0
PGR004G1125 Punica granatum HOM05D003745 ORTHO05D004215 5.4e-07 58.2 97 39.2
AL5G22960 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 7.1e-07 57.8 83 38.6
PSO339G5919 Papaver somniferum HOM05D003745 ORTHO05D004215 7.1e-07 57.8 96 39.6
PSO384G0932 Papaver somniferum HOM05D003745 ORTHO05D004215 7.1e-07 57.8 96 38.5
Sabra09G0117500 Salix brachista HOM05D003745 ORTHO05D004215 9.2e-07 57.4 36 69.4
Peaxi162Scf00110g02023 Petunia axillaris HOM05D003745 ORTHO05D004215 1.2e-06 57.0 45 55.6
HanXRQChr13g0396991 Helianthus annuus HOM05D003745 ORTHO05D004215 1.6e-06 56.6 99 43.4
Oeu040536.1 Olea europaea HOM05D003745 ORTHO05D004215 1.6e-06 56.6 91 40.7
Solyc11g066880.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 1.6e-06 56.6 86 41.9
vmacro07360 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 1.6e-06 56.6 97 39.2
C01p34270 Brassica napus HOM05D003745 ORTHO05D004215 2.1e-06 56.2 89 36.0
BolC1t03395H Brassica oleracea HOM05D003745 ORTHO05D004215 2.1e-06 56.2 89 36.0
CARHR151430 Cardamine hirsuta HOM05D003745 ORTHO05D004215 2.7e-06 55.8 89 37.1
Peaxi162Scf00433g00025 Petunia axillaris HOM05D003745 ORTHO05D004215 2.7e-06 55.8 87 41.4
TWI77G0164 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 2.7e-06 55.8 90 41.1
CANSAT80G1673 Cannabis sativa HOM05D003745 ORTHO05D004215 3.5e-06 55.5 107 35.5
RcHm_v2.0_Chr3g0472171 Rosa chinensis HOM05D003745 ORTHO05D004215 3.5e-06 55.5 85 41.2
AT3G44735 Arabidopsis thaliana HOM05D003745 ORTHO05D004215 4.6e-06 55.1 81 37.0
CiPaw.10G005500 Carya illinoinensis HOM05D003745 ORTHO05D004215 4.6e-06 55.1 87 37.9
Nitab4.5_0000132g0150 Nicotiana tabacum HOM05D003745 ORTHO05D004215 4.6e-06 55.1 42 57.1
Sc12g0004180 Simmondsia chinensis HOM05D003745 ORTHO05D004215 4.6e-06 55.1 56 51.8
THA.LOC104799535 Tarenaya hassleriana HOM05D003745 ORTHO05D004215 6.0e-06 54.7 96 33.3
Manes.09G058940 Manihot esculenta HOM05D003745 ORTHO05D004215 7.8e-06 54.3 88 42.0
PGSC0003DMG400026535 Solanum tuberosum HOM05D003745 ORTHO05D004215 7.8e-06 54.3 86 41.9
vmacro23105 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 7.8e-06 54.3 63 47.6


User provided reference genes

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