Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.21002 Avicennia marina HOM05D005008 ORTHO05D006092 8.6e-81 303.5 145 100.0
MSTRG.18800 Avicennia marina HOM05D005008 ORTHO05D006092 7.0e-75 283.9 145 92.4
Migut.D02371 Erythranthe guttata HOM05D005008 ORTHO05D006092 6.0e-66 254.2 145 79.3
Migut.D02374 Erythranthe guttata HOM05D005008 ORTHO05D006092 6.0e-66 254.2 145 79.3
Oeu031444.1 Olea europaea HOM05D005008 ORTHO05D006092 7.3e-64 247.3 145 77.9
SGA_v2.0_scaffold114G31950 Striga asiatica HOM05D005008 ORTHO05D006092 3.1e-62 241.9 145 77.2
unitig_899.g15386 Utricularia gibba HOM05D005008 ORTHO05D006092 1.7e-60 236.1 142 76.8
unitig_746.g26601 Utricularia gibba HOM05D005008 ORTHO05D006092 1.4e-59 233.0 141 76.6
Manes.11G103800 Manihot esculenta HOM05D005008 ORTHO05D006092 4.7e-55 218.0 136 75.7
Dinv18863 Davidia involucrata HOM05D005008 ORTHO05D006092 2.4e-54 215.7 140 72.9
CSS0002518 Camellia sinensis var. sinensis HOM05D005008 ORTHO05D006092 5.2e-54 214.5 139 73.4
CsaV3_1G043620 Cucumis sativus L. HOM05D005008 ORTHO05D006092 1.5e-53 213.0 142 71.1
MELO3C015091.2 Cucumis melo HOM05D005008 ORTHO05D006092 4.4e-53 211.5 142 71.1
Hma1.2p1_0101F.1_g049710 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 1.7e-52 209.5 141 69.5
Rhsim13G0198500 Rhododendron simsii HOM05D005008 ORTHO05D006092 3.8e-52 208.4 141 67.4
Sopen11g029460 Solanum pennellii HOM05D005008 ORTHO05D006092 3.8e-52 208.4 137 71.5
Peaxi162Scf00717g00217 Petunia axillaris HOM05D005008 ORTHO05D006092 4.9e-52 208.0 138 68.8
CiPaw.13G126400 Carya illinoinensis HOM05D005008 ORTHO05D006092 6.4e-52 207.6 145 69.0
Nitab4.5_0002426g0070 Nicotiana tabacum HOM05D005008 ORTHO05D006092 6.4e-52 207.6 136 71.3
Nitab4.5_0015902g0010 Nicotiana tabacum HOM05D005008 ORTHO05D006092 8.4e-52 207.2 141 70.2
Atru.chr3.3067 Acer truncatum HOM05D005008 ORTHO05D006092 1.1e-51 206.8 144 63.2
Dinv21730 Davidia involucrata HOM05D005008 ORTHO05D006092 1.1e-51 206.8 135 73.3
Peaxi162Scf00098g00148 Petunia axillaris HOM05D005008 ORTHO05D006092 1.1e-51 206.8 138 69.6
PGSC0003DMG400002990 Solanum tuberosum HOM05D005008 ORTHO05D006092 1.1e-51 206.8 137 70.8
Nitab4.5_0003644g0030 Nicotiana tabacum HOM05D005008 ORTHO05D006092 3.2e-51 205.3 141 69.5
Nitab4.5_0005569g0020 Nicotiana tabacum HOM05D005008 ORTHO05D006092 3.2e-51 205.3 136 70.6
ClCG03G012390 Citrullus lanatus HOM05D005008 ORTHO05D006092 4.1e-51 204.9 137 70.8
Cc01_g07910 Coffea canephora HOM05D005008 ORTHO05D006092 4.1e-51 204.9 140 70.0
PGSC0003DMG400005906 Solanum tuberosum HOM05D005008 ORTHO05D006092 5.4e-51 204.5 137 68.6
Sabra09G0000700 Salix brachista HOM05D005008 ORTHO05D006092 7.1e-51 204.1 142 66.2
GSVIVG01028464001 Vitis vinifera HOM05D005008 ORTHO05D006092 7.1e-51 204.1 140 65.7
CAN.G1463.18 Capsicum annuum HOM05D005008 ORTHO05D006092 9.2e-51 203.8 132 71.2
PGR083G2197 Punica granatum HOM05D005008 ORTHO05D006092 1.6e-50 203.0 138 68.8
Solyc11g071790.2 Solanum lycopersicum HOM05D005008 ORTHO05D006092 1.6e-50 203.0 137 70.8
THA.LOC104808952 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 2.1e-50 202.6 143 67.1
Sed0018780 Sechium edule HOM05D005008 ORTHO05D006092 6.0e-50 201.1 138 68.1
Solyc06g073900.3 Solanum lycopersicum HOM05D005008 ORTHO05D006092 7.8e-50 200.7 137 67.2
Sopen06g030300 Solanum pennellii HOM05D005008 ORTHO05D006092 7.8e-50 200.7 137 67.2
Cfa010212 Carpinus fangiana HOM05D005008 ORTHO05D006092 1.7e-49 199.5 146 65.8
Potri.009G001100 Populus trichocarpa HOM05D005008 ORTHO05D006092 3.0e-49 198.7 142 63.4
Prupe.6G148300 Prunus persica HOM05D005008 ORTHO05D006092 3.0e-49 198.7 139 66.2
MD03G1160100 Malus domestica HOM05D005008 ORTHO05D006092 1.5e-48 196.4 138 66.7
Ciclev10029485m.g Citrus clementina HOM05D005008 ORTHO05D006092 4.3e-48 194.9 138 66.7
Eucgr.J00592 Eucalyptus grandis HOM05D005008 ORTHO05D006092 4.3e-48 194.9 134 68.7
MD11G1175100 Malus domestica HOM05D005008 ORTHO05D006092 1.6e-47 193.0 142 63.4
Sp1g07130 Schrenkiella parvula HOM05D005008 ORTHO05D006092 1.6e-47 193.0 139 65.5
vmacro04058 Vaccinium macrocarpon HOM05D005008 ORTHO05D006092 3.6e-47 191.8 143 64.3
Carub.0001s0784 Capsella rubella HOM05D005008 ORTHO05D006092 6.2e-47 191.0 139 64.7
Duzib170G0524 Durio zibethinus HOM05D005008 ORTHO05D006092 6.2e-47 191.0 133 68.4
Sc21g0006720 Simmondsia chinensis HOM05D005008 ORTHO05D006092 6.2e-47 191.0 146 59.6
AT1G08480 Arabidopsis thaliana HOM05D005008 ORTHO05D006092 1.1e-46 190.3 139 64.0
CARHR008370 Cardamine hirsuta HOM05D005008 ORTHO05D006092 1.1e-46 190.3 134 67.2
Thecc.09G268300 Theobroma cacao HOM05D005008 ORTHO05D006092 2.4e-46 189.1 133 66.9
Duzib168G2291 Durio zibethinus HOM05D005008 ORTHO05D006092 4.0e-46 188.3 133 66.9
Thhalv10019305m.g Eutrema salsugineum HOM05D005008 ORTHO05D006092 4.0e-46 188.3 132 65.9
Hund18808 Selenicereus undatus HOM05D005008 ORTHO05D006092 1.2e-45 186.8 139 61.9
RcHm_v2.0_Chr5g0049161 Rosa chinensis HOM05D005008 ORTHO05D006092 1.5e-45 186.4 130 66.2
Sc12g0000410 Simmondsia chinensis HOM05D005008 ORTHO05D006092 1.5e-45 186.4 140 61.4
VMungo0251G1441 Vigna mungo HOM05D005008 ORTHO05D006092 1.5e-45 186.4 142 62.0
RcHm_v2.0_Chr7g0230441 Rosa chinensis HOM05D005008 ORTHO05D006092 2.0e-45 186.0 138 64.5
BraA06t23756Z Brassica rapa HOM05D005008 ORTHO05D006092 2.9e-44 182.2 132 65.9
Glyma.20G018300 Glycine max HOM05D005008 ORTHO05D006092 2.9e-44 182.2 132 62.9
Lsat_1_v5_gn_6_104840 Lactuca sativa HOM05D005008 ORTHO05D006092 2.9e-44 182.2 130 65.4
TAR628G1298 Trochodendron aralioides HOM05D005008 ORTHO05D006092 2.9e-44 182.2 137 59.1
A06p05480 Brassica napus HOM05D005008 ORTHO05D006092 3.8e-44 181.8 132 65.9
Phvul.002G096700 Phaseolus vulgaris HOM05D005008 ORTHO05D006092 3.8e-44 181.8 132 62.9
AL1G18910 Arabidopsis lyrata HOM05D005008 ORTHO05D006092 8.4e-44 180.6 156 56.4
Aa31LG5G14080 Aethionema arabicum HOM05D005008 ORTHO05D006092 1.1e-43 180.3 131 65.6
THA.LOC104815294 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 1.1e-43 180.3 140 62.9
TPR.G38259 Trifolium pratense HOM05D005008 ORTHO05D006092 5.4e-43 177.9 139 61.9
BcaB03g13330 Brassica carinata HOM05D005008 ORTHO05D006092 7.1e-43 177.6 129 64.3
A08p35120 Brassica napus HOM05D005008 ORTHO05D006092 7.1e-43 177.6 129 64.3
Gohir.D08G017500 Gossypium hirsutum HOM05D005008 ORTHO05D006092 7.1e-43 177.6 137 62.0
Gorai.004G011900 Gossypium raimondii HOM05D005008 ORTHO05D006092 7.1e-43 177.6 137 62.0
BcaB07g34092 Brassica carinata HOM05D005008 ORTHO05D006092 9.3e-43 177.2 129 65.1
C05p06590 Brassica napus HOM05D005008 ORTHO05D006092 9.3e-43 177.2 129 65.1
BolC5t29419H Brassica oleracea HOM05D005008 ORTHO05D006092 9.3e-43 177.2 129 65.1
Ca_18750_v3 Cicer arietinum L. HOM05D005008 ORTHO05D006092 1.6e-42 176.4 138 62.3
Gohir.A08G007400 Gossypium hirsutum HOM05D005008 ORTHO05D006092 1.6e-42 176.4 137 62.0
BraA08t35421Z Brassica rapa HOM05D005008 ORTHO05D006092 2.1e-42 176.0 129 63.6
Aa31LG2G20300 Aethionema arabicum HOM05D005008 ORTHO05D006092 2.7e-42 175.6 127 66.9
Aqoxy7G02777 Aquilegia oxysepala HOM05D005008 ORTHO05D006092 2.7e-42 175.6 130 62.3
Psat7g129160 Pisum sativum HOM05D005008 ORTHO05D006092 6.0e-42 174.5 138 60.9
TPR.G27448 Trifolium pratense HOM05D005008 ORTHO05D006092 6.0e-42 174.5 142 59.2
BcaC07g38394 Brassica carinata HOM05D005008 ORTHO05D006092 1.3e-41 173.3 133 61.7
C08p11520 Brassica napus HOM05D005008 ORTHO05D006092 1.3e-41 173.3 133 61.7
BolC8t48832H Brassica oleracea HOM05D005008 ORTHO05D006092 1.3e-41 173.3 133 61.7
EL10Ac7g16268 Beta vulgaris HOM05D005008 ORTHO05D006092 2.3e-41 172.6 132 60.6
AUR62001577 Chenopodium quinoa HOM05D005008 ORTHO05D006092 2.3e-41 172.6 140 60.0
Lalb_Chr16g0385131 Lupinus albus HOM05D005008 ORTHO05D006092 5.1e-41 171.4 125 61.6
QL02p021765 Quercus lobata HOM05D005008 ORTHO05D006092 5.1e-41 171.4 210 46.2
CDE05G0523 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 8.7e-41 170.6 139 52.5
CDE04G3167 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 1.1e-40 170.2 139 53.2
Medtr4g084320 Medicago truncatula HOM05D005008 ORTHO05D006092 2.5e-40 169.1 142 58.5
COL.COLO4_25364 Corchorus olitorius HOM05D005008 ORTHO05D006092 5.6e-40 167.9 127 63.8
FAN04G2231 Fragaria x ananassa HOM05D005008 ORTHO05D006092 7.3e-40 167.5 128 61.7
FAN13G1722 Fragaria x ananassa HOM05D005008 ORTHO05D006092 1.3e-39 166.8 123 64.2
Lalb_Chr05g0219631 Lupinus albus HOM05D005008 ORTHO05D006092 1.3e-39 166.8 139 57.6
FAN08G1342 Fragaria x ananassa HOM05D005008 ORTHO05D006092 1.6e-39 166.4 123 64.2
ATR1136G073 Amborella trichopoda HOM05D005008 ORTHO05D006092 2.1e-39 166.0 131 55.0
arahy.Tifrunner.gnm1.ann1.LRUS99 Arachis hypogaea HOM05D005008 ORTHO05D006092 2.1e-39 166.0 125 61.6
HanXRQChr05g0163331 Helianthus annuus HOM05D005008 ORTHO05D006092 2.1e-39 166.0 129 60.5
Lj2g0024950 Lotus japonicus HOM05D005008 ORTHO05D006092 2.1e-39 166.0 139 58.3
FAN18G0191 Fragaria x ananassa HOM05D005008 ORTHO05D006092 3.6e-39 165.2 128 60.9
ECA246G4934 Erigeron canadensis HOM05D005008 ORTHO05D006092 8.1e-39 164.1 122 61.5
arahy.Tifrunner.gnm1.ann1.0IE2SQ Arachis hypogaea HOM05D005008 ORTHO05D006092 4.0e-38 161.8 125 60.8
Lj2E351T1 Lonicera japonica HOM05D005008 ORTHO05D006092 1.5e-37 159.8 115 67.0
arahy.Tifrunner.gnm1.ann1.L1LZAQ Arachis hypogaea HOM05D005008 ORTHO05D006092 2.0e-37 159.5 121 61.2
TWI31G0222 Tripterygium wilfordii HOM05D005008 ORTHO05D006092 1.7e-36 156.4 136 58.8
MBI17_g21974_MAGBIO Magnolia biondii HOM05D005008 ORTHO05D006092 2.9e-36 155.6 122 55.7
MBI17_g21976_MAGBIO Magnolia biondii HOM05D000527 ORTHO05D000559 8.4e-36 154.1 147 51.7
arahy.Tifrunner.gnm1.ann1.67HGNM Arachis hypogaea HOM05D005008 ORTHO05D006092 1.3e-33 146.7 112 61.6
SalBow6G2115 Salvia bowleyana HOM05D005008 ORTHO05D006092 2.3e-33 146.0 192 44.8
SEGI_09212 Sequoiadendron giganteum HOM05D005008 ORTHO05D006092 5.1e-33 144.8 139 48.2
PSO325G0018 Papaver somniferum HOM05D005008 ORTHO05D006092 2.5e-32 142.5 130 54.6
DCAR_021985 Daucus carota HOM05D005008 ORTHO05D006092 7.4e-32 141.0 125 52.8
PSO144G0132 Papaver somniferum HOM05D005008 ORTHO05D006092 2.1e-31 139.4 131 53.4
Zm00001eb173990 Zea mays HOM05D005008 ORTHO05D006092 4.8e-31 138.3 127 47.2
Zm00001eb260600 Zea mays HOM05D005008 ORTHO05D006092 8.1e-31 137.5 127 46.5
Os08g0112800 Oryza sativa ssp. japonica HOM05D005008 ORTHO05D006092 4.0e-30 135.2 127 47.2
Ah.01g003330 Amaranthus hybridus HOM05D005008 ORTHO05D006092 1.4e-27 126.7 212 34.9
PSO478G0762 Papaver somniferum HOM05D005008 ORTHO05D006092 2.4e-27 125.9 112 52.7
HPP92_002034 Vanilla planifolia HOM05D005008 ORTHO05D006092 7.1e-27 124.4 139 42.4
Nn1g08680 Nelumbo nucifera HOM05D005008 ORTHO05D006092 3.5e-26 122.1 76 72.4
Sed0017043 Sechium edule HOM05D005008 ORTHO05D006092 4.6e-26 121.7 98 61.2
PSO017G3706 Papaver somniferum HOM05D005008 ORTHO05D006092 7.9e-26 120.9 112 50.9
Atru.chr5.2770 Acer truncatum HOM05D005008 ORTHO05D006092 2.3e-25 119.4 144 45.1
PSO017G4122 Papaver somniferum HOM05D005008 ORTHO05D006092 3.0e-25 119.0 112 50.0
PSO339G0217 Papaver somniferum HOM05D005008 ORTHO05D006092 6.7e-25 117.9 96 56.2
Haze_23598 Corylus avellana HOM05D005008 ORTHO05D006092 1.6e-23 113.2 81 65.4
AUR62020205 Chenopodium quinoa HOM05D005008 ORTHO05D006092 2.8e-23 112.5 94 58.5
PSO541G3575 Papaver somniferum HOM05D005008 ORTHO05D006092 3.7e-23 112.1 96 54.2
FvH4_5g32770 Fragaria vesca HOM05D005008 ORTHO05D006092 5.8e-21 104.8 81 63.0
Mapoly0024s0049 Marchantia polymorpha HOM05D005008 ORTHO05D006092 3.0e-17 92.4 130 39.2
Hma1.2p1_1258F.1_g270900 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 1.1e-14 84.0 56 67.9
PSO447G0120 Papaver somniferum HOM05D005008 ORTHO05D006092 1.4e-14 83.6 73 53.4
Hma1.2p1_1951F.1_g308770 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 1.8e-14 83.2 56 67.9
BcaB07g32561 Brassica carinata HOM05D005008 ORTHO05D006092 9.0e-14 80.9 79 53.2
Pp3c7_24330 Physcomitrium patens HOM05D005008 ORTHO05D006092 9.0e-14 80.9 134 34.3
TPR.G18466 Trifolium pratense HOM05D005008 ORTHO05D006092 1.5e-13 80.1 89 47.2
Pp3c1_6020 Physcomitrium patens HOM05D005008 ORTHO05D006092 3.4e-13 79.0 134 32.8
CBR_g29511 Chara braunii HOM05D005008 ORTHO05D006092 4.5e-13 78.6 142 30.3
CBR_g36250 Chara braunii HOM05D005008 ORTHO05D006092 3.8e-12 75.5 144 28.5
SMO364G0346 Selaginella moellendorffii HOM05D005008 ORTHO05D006092 1.8e-09 66.6 104 35.6
Oeu026671.1 Olea europaea HOM05D005008 ORTHO05D006092 5.7e-08 61.6 36 80.6


User provided reference genes

Program Settings