Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.21000 Avicennia marina HOM05D004779 ORTHO05D005737 2.1e-104 382.5 206 100.0
SalBow6G6366 Salvia bowleyana HOM05D004779 ORTHO05D005737 6.5e-58 228.0 203 63.5
Migut.D02461 Erythranthe guttata HOM05D004779 ORTHO05D005737 6.3e-53 211.5 203 60.6
MSTRG.18803 Avicennia marina HOM05D004779 ORTHO05D005737 5.3e-52 208.4 203 62.1
Migut.O00734 Erythranthe guttata HOM05D004779 ORTHO05D005737 2.3e-47 193.0 188 59.6
SGA_v2.0_scaffold7G04016 Striga asiatica HOM05D004779 ORTHO05D005737 5.9e-43 178.3 203 55.7
Cc01_g08160 Coffea canephora HOM05D004779 ORTHO05D005737 3.7e-37 159.1 205 53.2
Sopen11g029350 Solanum pennellii HOM05D004779 ORTHO05D005737 8.6e-34 147.9 207 48.8
Oeu051492.1 Olea europaea HOM05D004779 ORTHO05D005737 4.2e-33 145.6 209 51.7
Solyc11g071680.2 Solanum lycopersicum HOM05D004779 ORTHO05D005737 4.2e-33 145.6 207 48.3
Peaxi162Scf01091g00011 Petunia axillaris HOM05D004779 ORTHO05D005737 1.4e-31 140.6 206 47.1
CSS0005993 Camellia sinensis var. sinensis HOM05D004779 ORTHO05D005737 4.0e-31 139.0 211 49.8
CSS0044664 Camellia sinensis var. sinensis HOM05D004779 ORTHO05D005737 4.0e-31 139.0 211 49.8
Duzib170G1005 Durio zibethinus HOM05D004779 ORTHO05D005737 1.2e-30 137.5 217 48.8
Nitab4.5_0008410g0030 Nicotiana tabacum HOM05D004779 ORTHO05D005737 2.0e-30 136.7 191 48.2
COL.COLO4_25354 Corchorus olitorius HOM05D004779 ORTHO05D005737 5.7e-30 135.2 223 48.0
FAN16G1882 Fragaria x ananassa HOM05D004779 ORTHO05D005737 9.8e-30 134.4 209 49.3
FAN25G2723 Fragaria x ananassa HOM05D004779 ORTHO05D005737 2.2e-29 133.3 209 49.3
Hma1.2p1_0218F.1_g092300 Hydrangea macrophylla HOM05D004779 ORTHO05D005737 2.2e-29 133.3 204 47.5
RcHm_v2.0_Chr5g0049381 Rosa chinensis HOM05D004779 ORTHO05D005737 3.7e-29 132.5 208 48.6
Dinv32142 Davidia involucrata HOM05D004779 ORTHO05D005737 2.4e-28 129.8 193 50.8
FvH4_3g26940 Fragaria vesca HOM05D004779 ORTHO05D005737 3.1e-28 129.4 212 49.5
FAN11G2927 Fragaria x ananassa HOM05D004779 ORTHO05D005737 3.1e-28 129.4 212 49.5
FAN21G0778 Fragaria x ananassa HOM05D011291 ORTHO05D005737 7.0e-28 128.3 209 46.9
Glyma.14G044700 Glycine max HOM05D004779 ORTHO05D005737 9.2e-28 127.9 209 44.5
Gohir.A13G221700 Gossypium hirsutum HOM05D004779 ORTHO05D005737 3.5e-27 125.9 215 47.0
Glyma.02G271700 Glycine max HOM05D004779 ORTHO05D005737 7.8e-27 124.8 209 43.5
Nn2g14463 Nelumbo nucifera HOM05D004779 ORTHO05D005737 1.0e-26 124.4 211 43.6
Gorai.013G256500 Gossypium raimondii HOM05D004779 ORTHO05D005737 1.3e-26 124.0 217 46.1
CAN.G439.1 Capsicum annuum HOM05D004779 ORTHO05D005737 2.3e-26 123.2 207 42.5
GSVIVG01037513001 Vitis vinifera HOM05D004779 ORTHO05D005737 2.3e-26 123.2 212 46.2
Duzib168G2107 Durio zibethinus HOM05D004779 ORTHO05D005737 6.6e-26 121.7 219 45.7
Lj2g0019509 Lotus japonicus HOM05D004779 ORTHO05D005737 2.5e-25 119.8 211 45.5
Hund20969 Selenicereus undatus HOM05D004779 ORTHO05D005737 3.3e-25 119.4 211 45.5
vmacro04059 Vaccinium macrocarpon HOM05D004779 ORTHO05D005737 3.3e-25 119.4 209 45.5
Gohir.D13G225700 Gossypium hirsutum HOM05D004779 ORTHO05D005737 5.6e-25 118.6 221 44.3
arahy.Tifrunner.gnm1.ann1.3IJ79N Arachis hypogaea HOM05D004779 ORTHO05D005737 9.5e-25 117.9 212 44.8
Sed0007784 Sechium edule HOM05D004779 ORTHO05D005737 2.1e-24 116.7 209 45.5
arahy.Tifrunner.gnm1.ann1.GQ8P42 Arachis hypogaea HOM05D004779 ORTHO05D005737 1.4e-23 114.0 212 44.3
Prupe.6G149600 Prunus persica HOM05D004779 ORTHO05D005737 1.4e-23 114.0 216 45.4
FAN22G0927 Fragaria x ananassa HOM05D004779 ORTHO05D013607 1.8e-23 113.6 193 46.1
MD11G1177500 Malus domestica HOM05D004779 ORTHO05D005737 1.8e-23 113.6 213 44.6
Ca_06128_v3 Cicer arietinum L. HOM05D004779 ORTHO05D005737 2.3e-23 113.2 212 42.9
TAR369G0205 Trochodendron aralioides HOM05D004779 ORTHO05D005737 3.0e-23 112.8 211 42.7
Sed0027738 Sechium edule HOM05D004779 ORTHO05D005737 4.0e-23 112.5 209 43.5
Manes.11G104300 Manihot esculenta HOM05D004779 ORTHO05D005737 8.9e-23 111.3 196 44.4
Oeu026350.1 Olea europaea HOM05D004779 ORTHO05D005737 1.2e-22 110.9 189 45.5
ClCG06G014140 Citrullus lanatus HOM05D004779 ORTHO05D005737 1.5e-22 110.5 209 44.0
AUR62020193 Chenopodium quinoa HOM05D004779 ORTHO05D005737 2.0e-22 110.2 212 40.6
Thecc.09G267300 Theobroma cacao HOM05D004779 ORTHO05D005737 4.4e-22 109.0 219 42.9
Phvul.008G210200 Phaseolus vulgaris HOM05D004779 ORTHO05D005737 5.8e-22 108.6 209 41.1
Lsat_1_v5_gn_3_114561 Lactuca sativa HOM05D004779 ORTHO05D005737 7.5e-22 108.2 212 42.9
TPR.G13298 Trifolium pratense HOM05D004779 ORTHO05D005737 1.3e-21 107.5 209 43.1
VMungo0647G2327 Vigna mungo HOM05D004779 ORTHO05D005737 1.7e-21 107.1 209 40.2
CsaV3_1G004540 Cucumis sativus L. HOM05D004779 ORTHO05D005737 2.2e-21 106.7 209 42.6
Eucgr.J00599 Eucalyptus grandis HOM05D004779 ORTHO05D005737 2.2e-21 106.7 220 45.0
Rhsim13G0199300 Rhododendron simsii HOM05D004779 ORTHO05D005737 2.2e-21 106.7 229 41.0
DCAR_012261 Daucus carota HOM05D004779 ORTHO05D005737 2.9e-21 106.3 199 42.7
Lalb_Chr04g0249841 Lupinus albus HOM05D004779 ORTHO05D005737 4.9e-21 105.5 209 40.2
Sc06g0008600 Simmondsia chinensis HOM05D004779 ORTHO05D005737 6.4e-21 105.1 207 45.9
CANSAT54G2495 Cannabis sativa HOM05D004779 ORTHO05D005737 1.4e-20 104.0 218 42.2
Psat2g023720 Pisum sativum HOM05D004779 ORTHO05D005737 1.4e-20 104.0 204 42.2
CiPaw.13G125400 Carya illinoinensis HOM05D004779 ORTHO05D005737 2.4e-20 103.2 218 42.7
Gohir.A07G114480 Gossypium hirsutum HOM05D004779 ORTHO05D005737 2.4e-20 103.2 213 45.1
MELO3C017381.2 Cucumis melo HOM05D004779 ORTHO05D005737 3.2e-20 102.8 210 42.9
Gohir.D07G118400 Gossypium hirsutum HOM05D004779 ORTHO05D005737 4.1e-20 102.4 211 45.0
MD03G1161400 Malus domestica HOM05D004779 ORTHO05D005737 4.1e-20 102.4 209 41.1
AUR62001587 Chenopodium quinoa HOM05D004779 ORTHO05D005737 9.2e-20 101.3 189 42.3
HanXRQChr13g0420201 Helianthus annuus HOM05D004779 ORTHO05D005737 1.6e-19 100.5 214 37.4
Cpa.g.sc103.54 Carica papaya HOM05D004779 ORTHO05D005737 2.7e-19 99.8 198 44.9
Atru.chr3.3301 Acer truncatum HOM05D004779 ORTHO05D005737 7.8e-19 98.2 210 42.9
Sabra09G0121800 Salix brachista HOM05D004779 ORTHO05D005737 1.7e-18 97.1 248 37.9
Lalb_Chr10g0105761 Lupinus albus HOM05D004779 ORTHO05D005737 3.9e-18 95.9 209 38.3
Medtr5g086790 Medicago truncatula HOM05D004779 ORTHO05D005737 1.5e-17 94.0 212 40.6
PGR119G0691 Punica granatum HOM05D004779 ORTHO05D005737 1.5e-17 94.0 215 40.9
Potri.009G155400 Populus trichocarpa HOM05D004779 ORTHO05D005737 1.9e-17 93.6 218 38.5
Actinidia12899 Actinidia chinensis HOM05D004779 ORTHO05D005737 2.5e-17 93.2 230 39.1
Potri.004G193300 Populus trichocarpa HOM05D004779 ORTHO05D005737 2.5e-17 93.2 212 39.2
THA.LOC104799595 Tarenaya hassleriana HOM05D004779 ORTHO05D005737 1.2e-16 90.9 198 39.9
Gorai.001G127300 Gossypium raimondii HOM05D004779 ORTHO05D005737 2.8e-16 89.7 211 42.7
AT5G20930 Arabidopsis thaliana HOM05D004779 ORTHO05D005737 3.6e-16 89.4 194 42.3
HanXRQChr03g0091061 Helianthus annuus HOM05D004779 ORTHO05D005737 3.6e-16 89.4 206 40.3
Cfa005492 Carpinus fangiana HOM05D004779 ORTHO05D005737 6.2e-16 88.6 236 37.3
FAN21G1171 Fragaria x ananassa HOM05D004779 ORTHO05D005737 6.2e-16 88.6 178 41.0
EL10Ac7g16253 Beta vulgaris HOM05D004779 ORTHO05D005737 1.1e-15 87.8 210 39.5
AL6G32490 Arabidopsis lyrata HOM05D004779 ORTHO05D005737 4.0e-15 85.9 194 38.1
PSO384G0479 Papaver somniferum HOM05D004779 ORTHO05D005737 4.0e-15 85.9 210 35.7
Ciclev10027942m.g Citrus clementina HOM05D004779 ORTHO05D005737 5.2e-15 85.5 209 39.7
PSO339G0772 Papaver somniferum HOM05D004779 ORTHO05D005737 6.8e-15 85.1 210 35.7
Carub.0006s1924 Capsella rubella HOM05D004779 ORTHO05D005737 8.9e-15 84.7 193 38.3
FAN02G4109 Fragaria x ananassa HOM05D004779 ORTHO05D005737 2.0e-14 83.6 190 41.1
Ah.08g222510 Amaranthus hybridus HOM05D004779 ORTHO05D005737 5.8e-14 82.0 203 36.0
CDE01G0526 Ceratophyllum demersum HOM05D004779 ORTHO05D005737 8.3e-13 78.2 189 37.0
THA.LOC104810971 Tarenaya hassleriana HOM05D004779 ORTHO05D005737 7.0e-12 75.1 197 35.5
BcaB05g22801 Brassica carinata HOM05D004779 ORTHO05D005737 9.2e-12 74.7 212 36.3
Thhalv10012855m.g Eutrema salsugineum HOM05D004779 ORTHO05D005737 2.7e-11 73.2 200 38.0
CARHR191920 Cardamine hirsuta HOM05D004779 ORTHO05D005737 4.6e-11 72.4 194 38.7
Sp6g23590 Schrenkiella parvula HOM05D004779 ORTHO05D005737 7.8e-11 71.6 200 36.5
CDE05G1310 Ceratophyllum demersum HOM05D004779 ORTHO05D005737 1.7e-10 70.5 163 36.8
Aa31LG1G13840 Aethionema arabicum HOM05D004779 ORTHO05D005737 3.9e-10 69.3 215 35.8
Aqoxy1G00564 Aquilegia oxysepala HOM05D004779 ORTHO05D005737 6.6e-10 68.6 209 34.9
C02p10520 Brassica napus HOM05D004779 ORTHO05D005737 3.3e-09 66.2 190 37.9
BolC9t58378H Brassica oleracea HOM05D004779 ORTHO05D005737 3.3e-09 66.2 195 34.4
BraA02t05604Z Brassica rapa HOM05D004779 ORTHO05D005737 3.3e-09 66.2 190 37.9
BcaC04g19491 Brassica carinata HOM05D004779 ORTHO05D005737 1.6e-08 63.9 190 34.2
C09p55170 Brassica napus HOM05D004779 ORTHO05D005737 1.6e-08 63.9 190 34.2
SEGI_33986 Sequoiadendron giganteum HOM05D004779 ORTHO05D005737 3.6e-08 62.8 206 35.4
A10p19090 Brassica napus HOM05D004779 ORTHO05D005737 4.7e-08 62.4 189 34.9
Nitab4.5_0010066g0010 Nicotiana tabacum HOM05D004779 ORTHO05D005737 4.7e-08 62.4 62 61.3
HPP92_004176 Vanilla planifolia HOM05D004779 ORTHO05D005737 8.1e-08 61.6 200 36.0
BraA10t43988Z Brassica rapa HOM05D004779 ORTHO05D005737 1.1e-07 61.2 198 32.8
BNapus_Darmor_BZH_scaffold_38p01260 Brassica napus HOM05D004779 ORTHO05D005737 4.0e-07 59.3 192 35.4
ECA240G3152 Erigeron canadensis HOM05D004779 ORTHO05D005737 6.8e-07 58.5 133 37.6
QL01p018814 Quercus lobata HOM05D004779 ORTHO05D005737 4.4e-06 55.8 240 30.8
MBI05_g37654_MAGBIO Magnolia biondii HOM05D004779 ORTHO05D005737 5.8e-06 55.5 79 49.4


User provided reference genes

Program Settings