Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.20995 Avicennia marina HOM05D006940 ORTHO05D008626 2.1e-88 328.9 160 100.0
MSTRG.18810 Avicennia marina HOM05D006940 ORTHO05D008626 1.5e-41 173.3 156 62.2
Migut.D02467 Erythranthe guttata HOM05D006940 ORTHO05D008626 1.3e-32 143.7 107 70.1
MSTRG.12756 Avicennia marina HOM05D006940 ORTHO05D008626 8.4e-29 131.0 126 57.1
SalBow6G3514 Salvia bowleyana HOM05D006940 ORTHO05D008626 4.6e-27 125.2 100 66.0
Nitab4.5_0003186g0010 Nicotiana tabacum HOM05D006940 ORTHO05D008626 1.8e-26 123.2 131 49.6
Psat0s1437g0080 Pisum sativum HOM05D006940 ORTHO05D008626 3.0e-26 122.5 166 44.6
Dinv28817 Davidia involucrata HOM05D006940 ORTHO05D008626 3.9e-26 122.1 115 52.2
QL09p045850 Quercus lobata HOM05D006940 ORTHO05D008626 1.1e-25 120.6 111 52.3
TWI36G1176 Tripterygium wilfordii HOM05D006940 ORTHO05D008626 1.5e-25 120.2 105 55.2
FvH4_2g17950 Fragaria vesca HOM05D006940 ORTHO05D008626 3.3e-25 119.0 98 62.2
FAN15G1530 Fragaria x ananassa HOM05D006940 ORTHO05D008626 3.3e-25 119.0 98 62.2
FAN24G1170 Fragaria x ananassa HOM05D006940 ORTHO05D008626 3.3e-25 119.0 98 62.2
Nitab4.5_0000038g0040 Nicotiana tabacum HOM05D006940 ORTHO05D008626 3.3e-25 119.0 110 54.5
Sopen08g020450 Solanum pennellii HOM05D006940 ORTHO05D008626 4.3e-25 118.6 97 61.9
Atru.chr6.1604 Acer truncatum HOM05D006940 ORTHO05D008626 7.4e-25 117.9 98 61.2
CSS0001884 Camellia sinensis var. sinensis HOM05D006940 ORTHO05D008626 9.6e-25 117.5 102 54.9
Oeu064661.1 Olea europaea HOM05D006940 ORTHO05D008626 9.6e-25 117.5 96 63.5
Phvul.008G137700 Phaseolus vulgaris HOM05D006940 ORTHO05D008626 1.6e-24 116.7 169 43.2
Gohir.A11G141800 Gossypium hirsutum HOM05D006940 ORTHO05D008626 2.1e-24 116.3 110 52.7
Gorai.007G158800 Gossypium raimondii HOM05D006940 ORTHO05D008626 2.1e-24 116.3 110 52.7
TPR.G26809 Trifolium pratense HOM05D006940 ORTHO05D008626 2.1e-24 116.3 149 45.0
Gohir.D11G148100 Gossypium hirsutum HOM05D006940 ORTHO05D008626 3.7e-24 115.5 110 51.8
Cpa.g.sc8.85 Carica papaya HOM05D006940 ORTHO05D008626 4.8e-24 115.2 57 84.2
Duzib211G0506 Durio zibethinus HOM05D006940 ORTHO05D008626 6.2e-24 114.8 57 84.2
Thecc.01G212400 Theobroma cacao HOM05D006940 ORTHO05D008626 6.2e-24 114.8 111 55.9
RcHm_v2.0_Chr6g0283181 Rosa chinensis HOM05D006940 ORTHO05D008626 8.1e-24 114.4 102 56.9
Glyma.18G152800 Glycine max HOM05D006940 ORTHO05D008626 1.1e-23 114.0 112 50.9
Sopen09g020450 Solanum pennellii HOM05D006940 ORTHO05D008626 1.1e-23 114.0 96 58.3
FAN27G2163 Fragaria x ananassa HOM05D006940 ORTHO05D008626 1.4e-23 113.6 98 60.2
Gohir.A07G159700 Gossypium hirsutum HOM05D006940 ORTHO05D008626 1.4e-23 113.6 109 51.4
Sabra02G0190300 Salix brachista HOM05D006940 ORTHO05D008626 1.4e-23 113.6 85 60.0
CSS0043498 Camellia sinensis var. sinensis HOM05D006940 ORTHO05D008626 1.8e-23 113.2 104 55.8
Ciclev10033128m.g Citrus clementina HOM05D006940 ORTHO05D008626 1.8e-23 113.2 100 55.0
Medtr7g052120 Medicago truncatula HOM05D006940 ORTHO05D008626 1.8e-23 113.2 112 52.7
SalBow7G1139 Salvia bowleyana HOM05D006940 ORTHO05D008626 1.8e-23 113.2 98 61.2
TAR365G0827 Trochodendron aralioides HOM05D006940 ORTHO05D008626 2.4e-23 112.8 114 51.8
DCAR_012690 Daucus carota HOM05D000328 ORTHO05D008626 3.1e-23 112.5 55 81.8
Solyc08g066610.3 Solanum lycopersicum HOM05D006940 ORTHO05D008626 3.1e-23 112.5 55 85.5
PGSC0003DMG400007740 Solanum tuberosum HOM05D006940 ORTHO05D008626 3.1e-23 112.5 95 61.1
Hma1.2p1_0781F.1_g216880 Hydrangea macrophylla HOM05D006940 ORTHO05D008626 5.3e-23 111.7 51 88.2
Manes.12G052500 Manihot esculenta HOM05D006940 ORTHO05D008626 5.3e-23 111.7 113 56.6
Potri.002G249901 Populus trichocarpa HOM05D006940 ORTHO05D008626 5.3e-23 111.7 106 52.8
Gohir.A07G197033 Gossypium hirsutum HOM05D006940 ORTHO05D008626 6.9e-23 111.3 57 78.9
Gorai.001G228900 Gossypium raimondii HOM05D006940 ORTHO05D008626 6.9e-23 111.3 57 78.9
MD10G1153200 Malus domestica HOM05D006940 ORTHO05D008626 6.9e-23 111.3 99 55.6
arahy.Tifrunner.gnm1.ann1.ZA5GY6 Arachis hypogaea HOM05D006940 ORTHO05D008626 9.0e-23 110.9 98 56.1
Gohir.D07G166700 Gossypium hirsutum HOM05D006940 ORTHO05D008626 9.0e-23 110.9 99 53.5
Haze_03308 Corylus avellana HOM05D006940 ORTHO05D008626 1.2e-22 110.5 58 77.6
Duzib133G0939 Durio zibethinus HOM05D006940 ORTHO05D008626 1.2e-22 110.5 101 53.5
MD05G1163400 Malus domestica HOM05D006940 ORTHO05D008626 1.2e-22 110.5 101 54.5
Manes.13G053500 Manihot esculenta HOM05D006940 ORTHO05D008626 1.2e-22 110.5 85 63.5
Prupe.8G192000 Prunus persica HOM05D006940 ORTHO05D008626 1.5e-22 110.2 109 54.1
Gohir.D07G203400 Gossypium hirsutum HOM05D006940 ORTHO05D008626 2.0e-22 109.8 96 55.2
Gorai.N003800 Gossypium raimondii HOM05D006940 ORTHO05D008626 2.0e-22 109.8 99 53.5
MELO3C021111.2 Cucumis melo HOM05D006940 ORTHO05D008626 2.6e-22 109.4 67 70.1
Sed0027137 Sechium edule HOM05D006940 ORTHO05D008626 2.6e-22 109.4 60 75.0
vmacro02811 Vaccinium macrocarpon HOM05D006940 ORTHO05D008626 2.6e-22 109.4 51 84.3
Duzib138G0498 Durio zibethinus HOM05D006940 ORTHO05D008626 3.4e-22 109.0 108 50.0
Eucgr.K02098 Eucalyptus grandis HOM05D006940 ORTHO05D008626 3.4e-22 109.0 111 50.5
Thhalv10026516m.g Eutrema salsugineum HOM05D006940 ORTHO05D008626 3.4e-22 109.0 111 55.9
Glyma.08G345100 Glycine max HOM05D006940 ORTHO05D008626 3.4e-22 109.0 113 51.3
PSO675G0779 Papaver somniferum HOM05D006940 ORTHO05D008626 3.4e-22 109.0 109 51.4
Lj1g0019270 Lotus japonicus HOM05D006940 ORTHO05D008626 4.5e-22 108.6 112 50.0
Lalb_Chr21g0315011 Lupinus albus HOM05D006940 ORTHO05D008626 4.5e-22 108.6 52 82.7
PGR044G1150 Punica granatum HOM05D006940 ORTHO05D008626 5.8e-22 108.2 100 54.0
PSO017G0530 Papaver somniferum HOM05D006940 ORTHO05D008626 7.6e-22 107.8 109 51.4
Rhsim13G0052100 Rhododendron simsii HOM05D006940 ORTHO05D008626 7.6e-22 107.8 112 48.2
CiPaw.14G043100 Carya illinoinensis HOM05D006940 ORTHO05D008626 9.9e-22 107.5 58 74.1
TWI75G1309 Tripterygium wilfordii HOM05D006940 ORTHO05D008626 9.9e-22 107.5 141 41.1
CiPaw.13G054100 Carya illinoinensis HOM05D006940 ORTHO05D008626 1.3e-21 107.1 115 47.8
COL.COLO4_06154 Corchorus olitorius HOM05D006940 ORTHO05D008626 1.7e-21 106.7 57 75.4
CsaV3_7G026610 Cucumis sativus L. HOM05D006940 ORTHO05D008626 1.7e-21 106.7 49 85.7
HanXRQChr08g0231211 Helianthus annuus HOM05D006940 ORTHO05D008626 2.2e-21 106.3 98 51.0
Carub.0007s2980 Capsella rubella HOM05D006940 ORTHO05D008626 2.9e-21 105.9 106 54.7
CARHR218280 Cardamine hirsuta HOM05D006940 ORTHO05D008626 2.9e-21 105.9 106 55.7
AL9U11560 Arabidopsis lyrata HOM05D006940 ORTHO05D008626 3.8e-21 105.5 96 54.2
EL10Ac5g11605 Beta vulgaris HOM05D006940 ORTHO05D008626 3.8e-21 105.5 101 52.5
Sed0013755 Sechium edule HOM05D006940 ORTHO05D008626 3.8e-21 105.5 60 73.3
C08p08940 Brassica napus HOM05D006940 ORTHO05D008626 4.9e-21 105.1 103 52.4
BolC8t47738H Brassica oleracea HOM05D006940 ORTHO05D008626 4.9e-21 105.1 103 52.4
Lalb_Chr03g0041181 Lupinus albus HOM05D006940 ORTHO05D008626 4.9e-21 105.1 52 80.8
TPR.G2024 Trifolium pratense HOM05D006940 ORTHO05D008626 4.9e-21 105.1 50 82.0
BcaB04g17733 Brassica carinata HOM05D006940 ORTHO05D008626 6.4e-21 104.8 103 53.4
CANSAT01G0416 Cannabis sativa HOM05D006940 ORTHO05D008626 6.4e-21 104.8 58 72.4
CANSAT01G0831 Cannabis sativa HOM05D006940 ORTHO05D008626 6.4e-21 104.8 58 72.4
CANSAT01G1056 Cannabis sativa HOM05D006940 ORTHO05D008626 6.4e-21 104.8 58 72.4
Lsat_1_v5_gn_8_97920 Lactuca sativa HOM05D006940 ORTHO05D008626 6.4e-21 104.8 91 53.8
Nn1g08072 Nelumbo nucifera HOM05D006940 ORTHO05D008626 6.4e-21 104.8 52 76.9
Sp7g09835 Schrenkiella parvula HOM05D006940 ORTHO05D008626 6.4e-21 104.8 51 82.4
A08p07220 Brassica napus HOM05D006940 ORTHO05D008626 8.4e-21 104.4 103 52.4
BraA08t32735Z Brassica rapa HOM05D006940 ORTHO05D008626 8.4e-21 104.4 103 52.4
AT4G12970 Arabidopsis thaliana HOM05D006940 ORTHO05D008626 1.4e-20 103.6 106 53.8
Nn7g37664 Nelumbo nucifera HOM05D006940 ORTHO05D008626 1.4e-20 103.6 52 76.9
Aa31sc38G90 Aethionema arabicum HOM05D006940 ORTHO05D008626 1.9e-20 103.2 50 82.0
MBI07_g41210_MAGBIO Magnolia biondii HOM05D006940 ORTHO05D008626 2.5e-20 102.8 52 76.9
Os01g0914400 Oryza sativa ssp. japonica HOM05D006940 ORTHO05D008626 2.5e-20 102.8 59 74.6
VMungo0331G0069 Vigna mungo HOM05D006940 ORTHO05D008626 2.5e-20 102.8 49 83.7
Zm00001eb143570 Zea mays HOM05D006940 ORTHO05D008626 3.2e-20 102.4 51 80.4
Zm00001eb364920 Zea mays HOM05D006940 ORTHO05D008626 3.2e-20 102.4 51 80.4
Lsat_1_v5_gn_9_16040 Lactuca sativa HOM05D006940 ORTHO05D008626 7.1e-20 101.3 77 59.7
arahy.Tifrunner.gnm1.ann1.7YS827 Arachis hypogaea HOM05D006940 ORTHO05D008626 1.6e-19 100.1 93 53.8
Phvul.010G031000 Phaseolus vulgaris HOM05D006940 ORTHO05D008626 1.6e-19 100.1 100 47.0
Psat0s4060g0200 Pisum sativum HOM05D006940 ORTHO05D008626 2.7e-19 99.4 106 46.2
GSVIVG01031691001 Vitis vinifera HOM05D006940 ORTHO05D008626 7.9e-19 97.8 47 78.7
Sc01g0005680 Simmondsia chinensis HOM05D006940 ORTHO05D008626 1.0e-18 97.4 109 46.8
HanXRQChr16g0507861 Helianthus annuus HOM05D006940 ORTHO05D008626 1.3e-18 97.1 141 44.0
THA.LOC104818992 Tarenaya hassleriana HOM05D006940 ORTHO05D008626 3.9e-18 95.5 48 75.0
TAR636G0441 Trochodendron aralioides HOM05D006940 ORTHO05D008626 3.9e-18 95.5 50 72.0
PGSC0003DMG400020111 Solanum tuberosum HOM05D006940 ORTHO05D008626 1.1e-17 94.0 95 51.6
ATR0609G114 Amborella trichopoda HOM05D006940 ORTHO05D008626 1.5e-17 93.6 50 76.0
AUR62042875 Chenopodium quinoa HOM05D006940 ORTHO05D008626 1.9e-17 93.2 53 69.8
SEGI_36325 Sequoiadendron giganteum HOM05D006940 ORTHO05D008626 5.6e-17 91.7 64 65.6
HPP92_011792 Vanilla planifolia HOM05D006940 ORTHO05D008626 1.1e-15 87.4 114 42.1
Zm00001eb174960 Zea mays HOM05D006940 ORTHO05D008626 1.5e-14 83.6 49 63.3
SMO351G0191 Selaginella moellendorffii HOM05D006940 ORTHO05D008626 8.4e-13 77.8 49 59.2


User provided reference genes

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