Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.2096 Avicennia marina HOM05D005547 ORTHO05D006887 3.1e-78 295.0 147 100.0
MSTRG.13653 Avicennia marina HOM05D005547 ORTHO05D006887 5.3e-46 188.0 101 91.1
SGA_v2.0_scaffold65G22157 Striga asiatica HOM05D005547 ORTHO05D006887 1.3e-44 183.3 101 88.1
unitig_699.g19647 Utricularia gibba HOM05D005547 ORTHO05D006887 5.0e-44 181.4 101 90.1
PGR142G0372 Punica granatum HOM05D005547 ORTHO05D006887 1.0e-41 173.7 101 85.1
COL.COLO4_27546 Corchorus olitorius HOM05D005547 ORTHO05D006887 5.2e-41 171.4 101 84.2
Solyc04g008490.2 Solanum lycopersicum HOM05D005547 ORTHO05D006887 5.2e-41 171.4 101 81.2
Sopen04g003640 Solanum pennellii HOM05D005547 ORTHO05D006887 5.2e-41 171.4 101 81.2
Ciclev10017277m.g Citrus clementina HOM05D005547 ORTHO05D006887 6.7e-41 171.0 104 80.8
Duzib251G0939 Durio zibethinus HOM05D005547 ORTHO05D006887 6.7e-41 171.0 103 82.5
Thecc.02G300400 Theobroma cacao HOM05D005547 ORTHO05D006887 6.7e-41 171.0 103 82.5
CAN.G458.10 Capsicum annuum HOM05D005547 ORTHO05D006887 2.0e-40 169.5 101 79.2
Gohir.A03G114100 Gossypium hirsutum HOM05D005547 ORTHO05D006887 4.4e-40 168.3 103 80.6
Gorai.005G154900 Gossypium raimondii HOM05D005547 ORTHO05D006887 4.4e-40 168.3 103 80.6
Gorai.005G155000 Gossypium raimondii HOM05D005547 ORTHO05D006887 4.4e-40 168.3 103 80.6
CANSAT78G0133 Cannabis sativa HOM05D005547 ORTHO05D006887 5.7e-40 167.9 101 81.2
Oeu024849.1 Olea europaea HOM05D005547 ORTHO05D006887 5.7e-40 167.9 103 80.6
Ah.03g147190 Amaranthus hybridus HOM05D005547 ORTHO05D006887 9.7e-40 167.2 101 81.2
Gohir.D02G138500 Gossypium hirsutum HOM05D005547 ORTHO05D006887 1.3e-39 166.8 103 80.6
Potri.008G141900 Populus trichocarpa HOM05D005547 ORTHO05D006887 1.3e-39 166.8 102 80.4
Duzib268G1003 Durio zibethinus HOM05D005547 ORTHO05D006887 1.7e-39 166.4 103 79.6
Migut.D01210 Erythranthe guttata HOM05D005547 ORTHO05D006887 1.7e-39 166.4 105 78.1
Gohir.D02G138400 Gossypium hirsutum HOM05D005547 ORTHO05D006887 2.2e-39 166.0 103 79.6
MBI06_g29243_MAGBIO Magnolia biondii HOM05D005547 ORTHO05D006887 2.2e-39 166.0 115 73.9
Nitab4.5_0000129g0490 Nicotiana tabacum HOM05D005547 ORTHO05D006887 2.8e-39 165.6 105 79.0
Duzib248G0639 Durio zibethinus HOM05D005547 ORTHO05D006887 3.7e-39 165.2 103 80.6
Potri.010G099900 Populus trichocarpa HOM05D005547 ORTHO05D006887 3.7e-39 165.2 102 79.4
BcaB07g30360 Brassica carinata HOM05D005547 ORTHO05D006887 4.8e-39 164.9 104 80.8
CiPaw.06G057000 Carya illinoinensis HOM05D005547 ORTHO05D006887 4.8e-39 164.9 102 79.4
SalBow2G0745 Salvia bowleyana HOM05D005547 ORTHO05D006887 6.3e-39 164.5 92 88.0
BcaC06g34084 Brassica carinata HOM05D005547 ORTHO05D006887 8.2e-39 164.1 103 80.6
C07p32870 Brassica napus HOM05D005547 ORTHO05D006887 8.2e-39 164.1 103 80.6
BolC7t43802H Brassica oleracea HOM05D005547 ORTHO05D006887 8.2e-39 164.1 103 80.6
Nitab4.5_0001091g0130 Nicotiana tabacum HOM05D005547 ORTHO05D006887 8.2e-39 164.1 105 78.1
BraA09t37975Z Brassica rapa HOM05D005547 ORTHO05D006887 1.1e-38 163.7 107 78.5
Cfa015074 Carpinus fangiana HOM05D005547 ORTHO05D006887 1.1e-38 163.7 101 80.2
Nn8g41124 Nelumbo nucifera HOM05D005547 ORTHO05D006887 1.1e-38 163.7 101 78.2
ATR0807G170 Amborella trichopoda HOM05D005547 ORTHO05D006887 1.4e-38 163.3 101 78.2
BcaC04g21537 Brassica carinata HOM05D005547 ORTHO05D006887 1.4e-38 163.3 103 80.6
BcaC06g31254 Brassica carinata HOM05D005547 ORTHO05D006887 1.4e-38 163.3 103 80.6
BcaC06g31255 Brassica carinata HOM05D005547 ORTHO05D006887 1.4e-38 163.3 103 80.6
A09p23740 Brassica napus HOM05D005547 ORTHO05D006887 1.4e-38 163.3 103 80.6
C09p30580 Brassica napus HOM05D005547 ORTHO05D006887 1.4e-38 163.3 103 80.6
BolC9t55922H Brassica oleracea HOM05D005547 ORTHO05D006887 1.4e-38 163.3 103 80.6
Thhalv10005178m.g Eutrema salsugineum HOM05D005547 ORTHO05D006887 1.4e-38 163.3 103 80.6
Sp2g13460 Schrenkiella parvula HOM05D005547 ORTHO05D006887 1.4e-38 163.3 103 80.6
PSO063G0668 Papaver somniferum HOM05D005547 ORTHO05D006887 2.4e-38 162.5 101 77.2
A06p43870 Brassica napus HOM05D005547 ORTHO05D006887 3.1e-38 162.2 103 79.6
BraA06t27263Z Brassica rapa HOM05D005547 ORTHO05D006887 3.1e-38 162.2 103 79.6
Haze_11478 Corylus avellana HOM05D005547 ORTHO05D006887 3.1e-38 162.2 101 79.2
A02p32590 Brassica napus HOM05D005547 ORTHO05D006887 4.1e-38 161.8 101 82.2
Sabra08G0107500 Salix brachista HOM05D005547 ORTHO05D006887 4.1e-38 161.8 101 78.2
Sabra10G0072400 Salix brachista HOM05D005547 ORTHO05D006887 4.1e-38 161.8 102 79.4
PSO782G2712 Papaver somniferum HOM05D005547 ORTHO05D006887 5.3e-38 161.4 101 76.2
ClCG11G000640 Citrullus lanatus HOM05D005547 ORTHO05D006887 7.0e-38 161.0 101 78.2
Rhsim09G0081900 Rhododendron simsii HOM05D005547 ORTHO05D006887 7.0e-38 161.0 105 75.2
Sc03g0005980 Simmondsia chinensis HOM05D005547 ORTHO05D006887 7.0e-38 161.0 101 80.2
Atru.chr11.1034 Acer truncatum HOM05D005547 ORTHO05D006887 9.1e-38 160.6 102 76.5
Prupe.1G340400 Prunus persica HOM05D005547 ORTHO05D006887 9.1e-38 160.6 103 77.7
TWI53G0286 Tripterygium wilfordii HOM05D005547 ORTHO05D006887 9.1e-38 160.6 104 76.9
CSS0022085 Camellia sinensis var. sinensis HOM05D005547 ORTHO05D006887 1.2e-37 160.2 101 79.2
CSS0041328 Camellia sinensis var. sinensis HOM05D005547 ORTHO05D006887 1.2e-37 160.2 101 79.2
MBI06_g19635_MAGBIO Magnolia biondii HOM05D005547 ORTHO05D006887 1.2e-37 160.2 97 81.4
Cpa.g.sc2.79 Carica papaya HOM05D005547 ORTHO05D006887 2.0e-37 159.5 102 79.4
Gohir.A03G114000 Gossypium hirsutum HOM05D005547 ORTHO05D006887 2.0e-37 159.5 103 77.7
Nitab4.5_0003889g0030 Nicotiana tabacum HOM05D005547 ORTHO05D006887 2.6e-37 159.1 101 78.2
MD13G1013300 Malus domestica HOM05D005547 ORTHO05D006887 3.5e-37 158.7 103 76.7
Ca_11205_v3 Cicer arietinum L. HOM05D005547 ORTHO05D006887 4.5e-37 158.3 103 77.7
THA.LOC104824108 Tarenaya hassleriana HOM05D005547 ORTHO05D006887 4.5e-37 158.3 101 77.2
QL03p040577 Quercus lobata HOM05D005547 ORTHO05D006887 5.9e-37 157.9 101 76.2
QL03p040948 Quercus lobata HOM05D005547 ORTHO05D006887 5.9e-37 157.9 101 76.2
TWI77G0558 Tripterygium wilfordii HOM05D005547 ORTHO05D006887 5.9e-37 157.9 104 75.0
Manes.17G091700 Manihot esculenta HOM05D005547 ORTHO05D006887 7.7e-37 157.5 103 77.7
AL5G11260 Arabidopsis lyrata HOM05D005547 ORTHO05D006887 1.0e-36 157.1 104 76.9
THA.LOC104805110 Tarenaya hassleriana HOM05D005547 ORTHO05D006887 1.0e-36 157.1 101 76.2
Manes.15G140700 Manihot esculenta HOM05D005547 ORTHO05D006887 1.3e-36 156.8 103 75.7
Lalb_Chr02g0143381 Lupinus albus HOM05D005547 ORTHO05D006887 1.7e-36 156.4 103 75.7
Lalb_Chr21g0306901 Lupinus albus HOM05D005547 ORTHO05D006887 1.7e-36 156.4 103 73.8
MD16G1010200 Malus domestica HOM05D005547 ORTHO05D006887 1.7e-36 156.4 103 74.8
TWI77G0905 Tripterygium wilfordii HOM05D005547 ORTHO05D006887 1.7e-36 156.4 104 74.0
Psat6g231800 Pisum sativum HOM05D005547 ORTHO05D006887 2.9e-36 155.6 103 75.7
Carub.0005s0107 Capsella rubella HOM05D005547 ORTHO05D006887 6.5e-36 154.5 103 76.7
Eucgr.B02628 Eucalyptus grandis HOM05D005547 ORTHO05D006887 6.5e-36 154.5 107 73.8
RcHm_v2.0_Chr4g0445601 Rosa chinensis HOM05D005547 ORTHO05D006887 6.5e-36 154.5 103 75.7
Phvul.007G019800 Phaseolus vulgaris HOM05D005547 ORTHO05D006887 1.5e-35 153.3 101 76.2
TPR.G2488 Trifolium pratense HOM05D005547 ORTHO05D006887 1.9e-35 152.9 110 73.6
MELO3C022540.2 Cucumis melo HOM05D005547 ORTHO05D006887 2.5e-35 152.5 101 74.3
HanXRQChr12g0365891 Helianthus annuus HOM05D005547 ORTHO05D006887 3.2e-35 152.1 101 73.3
TAR295G0002 Trochodendron aralioides HOM05D005547 ORTHO05D006887 3.2e-35 152.1 103 72.8
TAR622G1295 Trochodendron aralioides HOM05D005547 ORTHO05D006887 3.2e-35 152.1 103 72.8
FAN07G0567 Fragaria x ananassa HOM05D005547 ORTHO05D006887 4.2e-35 151.8 106 73.6
FAN17G0411 Fragaria x ananassa HOM05D005547 ORTHO05D006887 4.2e-35 151.8 106 73.6
Medtr1g112480 Medicago truncatula HOM05D005547 ORTHO05D006887 4.2e-35 151.8 106 74.5
FvH4_4g35970 Fragaria vesca HOM05D005547 ORTHO05D006887 5.5e-35 151.4 106 73.6
FAN12G1717 Fragaria x ananassa HOM05D005547 ORTHO05D006887 5.5e-35 151.4 106 73.6
Sed0021722 Sechium edule HOM05D005547 ORTHO05D006887 5.5e-35 151.4 101 73.3
AT2G02050 Arabidopsis thaliana HOM05D005547 ORTHO05D006887 7.2e-35 151.0 104 74.0
CARHR144680 Cardamine hirsuta HOM05D005547 ORTHO05D006887 7.2e-35 151.0 103 74.8
Sed0015045 Sechium edule HOM05D005547 ORTHO05D006887 7.2e-35 151.0 101 72.3
DCAR_002637 Daucus carota HOM05D005547 ORTHO05D006887 1.2e-34 150.2 100 72.0
FAN22G0273 Fragaria x ananassa HOM05D005547 ORTHO05D006887 1.2e-34 150.2 106 72.6
Ah.02g120230 Amaranthus hybridus HOM05D005547 ORTHO05D006887 1.6e-34 149.8 101 73.3
Lj5g0000051 Lotus japonicus HOM05D005547 ORTHO05D006887 2.7e-34 149.1 100 74.0
Aa31LG2G7900 Aethionema arabicum HOM05D000012 ORTHO05D000567 4.7e-34 148.3 89 83.1
Lsat_1_v5_gn_5_36641 Lactuca sativa HOM05D005547 ORTHO05D006887 4.7e-34 148.3 101 71.3
SHI04242 Sapria himalayana HOM05D005547 ORTHO05D006887 6.1e-34 147.9 100 74.0
BcaB07g30717 Brassica carinata HOM05D005547 ORTHO05D006887 1.0e-33 147.1 94 77.7
BcaB07g30718 Brassica carinata HOM05D005547 ORTHO05D006887 1.0e-33 147.1 94 77.7
Glyma.20G108500 Glycine max HOM05D005547 ORTHO05D006887 1.8e-33 146.4 101 72.3
Hma1.2p1_0068F.1_g037220 Hydrangea macrophylla HOM05D005547 ORTHO05D006887 1.8e-33 146.4 98 75.5
AUR62003480 Chenopodium quinoa HOM05D005547 ORTHO05D006887 6.7e-33 144.4 92 77.2
AUR62017789 Chenopodium quinoa HOM05D005547 ORTHO05D006887 6.7e-33 144.4 92 77.2
Peaxi162Scf00025g00059 Petunia axillaris HOM05D005547 ORTHO05D006887 2.6e-32 142.5 102 70.6
Os03g0129900 Oryza sativa ssp. japonica HOM05D005547 ORTHO05D006887 8.2e-31 137.5 95 68.4
Nitab4.5_0000944g0080 Nicotiana tabacum HOM05D005547 ORTHO05D006887 1.8e-30 136.3 73 86.3
HPP92_022540 Vanilla planifolia HOM05D005547 ORTHO05D006887 5.3e-30 134.8 89 75.3
Zm00001eb002320 Zea mays HOM05D005547 ORTHO05D006887 5.3e-30 134.8 94 70.2
arahy.Tifrunner.gnm1.ann1.VES97W Arachis hypogaea HOM05D005547 ORTHO05D006887 1.3e-28 130.2 78 79.5
Cc11_g05010 Coffea canephora HOM05D005547 ORTHO05D006887 1.7e-28 129.8 69 84.1
ECA233G2357 Erigeron canadensis HOM05D005547 ORTHO05D006887 1.5e-27 126.7 96 66.7
MD17G1273300 Malus domestica HOM05D005547 ORTHO05D006887 7.2e-27 124.4 68 82.4
Haze_10731 Corylus avellana HOM05D005547 ORTHO05D006887 1.5e-24 116.7 85 68.2
Mapoly0058s0109 Marchantia polymorpha HOM05D005547 ORTHO05D006887 7.7e-21 104.4 70 67.1
C02p50170 Brassica napus HOM05D005547 ORTHO05D006887 5.0e-20 101.7 68 75.0
BolC2t11096H Brassica oleracea HOM05D005547 ORTHO05D006887 5.0e-20 101.7 68 75.0
Pp3c14_25130 Physcomitrium patens HOM05D005547 ORTHO05D006887 1.1e-19 100.5 77 59.7
Pp3c10_11190 Physcomitrium patens HOM05D005547 ORTHO05D006887 1.5e-19 100.1 74 60.8
BcaC03g17109 Brassica carinata HOM05D005547 ORTHO05D006887 1.0e-17 94.0 83 61.4
GSVIVG01000609001 Vitis vinifera HOM05D005547 ORTHO05D006887 2.3e-17 92.8 57 75.4
arahy.Tifrunner.gnm1.ann1.FEK9G3 Arachis hypogaea HOM05D005547 ORTHO05D006887 3.0e-17 92.4 62 64.5
Gorai.002G169600 Gossypium raimondii HOM05D005547 ORTHO05D006887 3.0e-17 92.4 103 53.4
CBR_g4786 Chara braunii HOM05D005547 ORTHO05D006887 4.4e-16 88.6 70 55.7
SMO356G0087 Selaginella moellendorffii HOM05D005547 ORTHO05D006887 8.3e-15 84.3 65 55.4
MCO06G054 Micromonas commoda HOM05D005547 ORTHO05D006887 1.8e-14 83.2 55 63.6
Glyma.14G132200 Glycine max HOM05D005547 ORTHO05D006887 3.5e-13 79.0 101 48.5
PRCOL_00006370 Prasinoderma coloniale HOM05D005547 ORTHO05D006887 7.5e-08 61.2 76 43.4


User provided reference genes

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