Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.20939 Avicennia marina HOM05D007418 ORTHO05D009419 3.4e-141 505.0 254 100.0
Migut.D02561 Erythranthe guttata HOM05D007418 ORTHO05D009419 5.3e-94 348.2 227 72.7
SalBow2G0815 Salvia bowleyana HOM05D007418 ORTHO05D009419 2.8e-87 325.9 250 68.0
Solyc01g044490.4 Solanum lycopersicum HOM05D007418 ORTHO05D009419 6.3e-79 298.1 201 72.1
Sopen01g018620 Solanum pennellii HOM05D007418 ORTHO05D009419 3.1e-78 295.8 201 71.6
CAN.G752.2 Capsicum annuum HOM05D007418 ORTHO05D009419 3.2e-75 285.8 249 59.0
Actinidia16244 Actinidia chinensis HOM05D007418 ORTHO05D009419 1.2e-74 283.9 238 59.7
CAN.G782.23 Capsicum annuum HOM05D007418 ORTHO05D009419 1.8e-73 280.0 201 66.7
ECA248G1985 Erigeron canadensis HOM05D007418 ORTHO05D009419 1.8e-73 280.0 202 64.4
HanXRQChr01g0021361 Helianthus annuus HOM05D007418 ORTHO05D009419 2.6e-72 276.2 202 64.4
Dinv13469 Davidia involucrata HOM05D007418 ORTHO05D009419 2.8e-71 272.7 203 64.0
SGA_v2.0_scaffold6G03369 Striga asiatica HOM05D007418 ORTHO05D009419 1.8e-70 270.0 212 67.9
Oeu023704.1 Olea europaea HOM05D007418 ORTHO05D009419 1.7e-68 263.5 168 74.4
GSVIVG01025464001 Vitis vinifera HOM05D007418 ORTHO05D009419 2.1e-66 256.5 202 61.9
Peaxi162Scf00005g00613 Petunia axillaris HOM05D007418 ORTHO05D009419 3.0e-65 252.7 168 72.6
unitig_899.g15026 Utricularia gibba HOM05D007418 ORTHO05D009419 2.0e-64 250.0 149 78.5
PSO384G4713 Papaver somniferum HOM05D007418 ORTHO05D009419 7.5e-64 248.1 202 59.9
PSO339G6348 Papaver somniferum HOM05D007418 ORTHO05D009419 2.2e-63 246.5 202 59.4
Nn7g35872 Nelumbo nucifera HOM05D007418 ORTHO05D009419 1.8e-62 243.4 202 56.4
Cc01_g03260 Coffea canephora HOM05D007418 ORTHO05D009419 9.2e-62 241.1 170 69.4
Cc01_g00020 Coffea canephora HOM05D007418 ORTHO05D009419 3.5e-61 239.2 168 69.6
Zm00001eb061520 Zea mays HOM05D007418 ORTHO05D009419 5.9e-61 238.4 204 56.9
Aqoxy1G00469 Aquilegia oxysepala HOM05D002514 ORTHO05D002761 5.0e-60 235.3 201 56.2
ATR0737G157 Amborella trichopoda HOM05D007418 ORTHO05D009419 1.1e-59 234.2 196 59.2
AUR62019167 Chenopodium quinoa HOM05D007418 ORTHO05D009419 2.5e-59 233.0 232 51.7
CAN.G132.16 Capsicum annuum HOM05D007418 ORTHO05D009419 7.3e-59 231.5 208 57.7
TAR369G1115 Trochodendron aralioides HOM05D007418 ORTHO05D009419 7.3e-59 231.5 233 52.8
Lsat_1_v5_gn_1_67260 Lactuca sativa HOM05D007418 ORTHO05D009419 2.0e-56 223.4 189 58.2
COL.COLO4_22858 Corchorus olitorius HOM05D007418 ORTHO05D009419 9.8e-56 221.1 208 50.0
Thecc.06G017000 Theobroma cacao HOM05D007418 ORTHO05D009419 9.8e-56 221.1 201 51.2
AUR62040906 Chenopodium quinoa HOM05D007418 ORTHO05D009419 3.7e-55 219.2 191 57.1
ClCG03G014480 Citrullus lanatus HOM05D007418 ORTHO05D009419 3.7e-55 219.2 236 46.2
Duzib160G0534 Durio zibethinus HOM05D007418 ORTHO05D009419 3.7e-55 219.2 207 48.3
DCAR_025361 Daucus carota HOM05D007418 ORTHO05D009419 4.9e-55 218.8 160 61.2
MELO3C029305.2 Cucumis melo HOM05D007418 ORTHO05D009419 3.2e-54 216.1 201 52.2
CsaV3_1G041690 Cucumis sativus L. HOM05D007418 ORTHO05D009419 5.4e-54 215.3 201 51.7
Gorai.009G114600 Gossypium raimondii HOM05D007418 ORTHO05D009419 1.2e-53 214.2 202 49.5
Gohir.A05G110100 Gossypium hirsutum HOM05D007418 ORTHO05D009419 2.7e-53 213.0 202 49.0
Lj6g0008878 Lotus japonicus HOM05D007418 ORTHO05D009419 4.6e-53 212.2 201 52.2
Manes.05G202800 Manihot esculenta HOM05D007418 ORTHO05D009419 4.6e-53 212.2 207 50.2
PGR119G2313 Punica granatum HOM05D007418 ORTHO05D009419 5.9e-53 211.8 254 44.5
RcHm_v2.0_Chr5g0083721 Rosa chinensis HOM05D007418 ORTHO05D009419 7.8e-53 211.5 201 49.8
Prupe.6G003800 Prunus persica HOM05D007418 ORTHO05D009419 1.7e-52 210.3 204 49.5
Ciclev10016443m.g Citrus clementina HOM05D007418 ORTHO05D009419 3.0e-52 209.5 229 47.2
CANSAT11G2630 Cannabis sativa HOM05D007418 ORTHO05D009419 3.9e-52 209.1 241 44.4
Eucgr.J01769 Eucalyptus grandis HOM05D007418 ORTHO05D009419 3.9e-52 209.1 201 49.8
FvH4_3g45540 Fragaria vesca HOM05D007418 ORTHO05D009419 3.9e-52 209.1 248 44.0
Ca_16377_v3 Cicer arietinum L. HOM05D007418 ORTHO05D009419 5.0e-52 208.8 198 50.0
Thhalv10021419m.g Eutrema salsugineum HOM05D007418 ORTHO05D009419 5.0e-52 208.8 218 47.2
Pp3c1_29390 Physcomitrium patens HOM05D007418 ORTHO05D009419 6.6e-52 208.4 203 49.8
TWI60G0114 Tripterygium wilfordii HOM05D007418 ORTHO05D009419 6.6e-52 208.4 202 51.0
MD11G1003800 Malus domestica HOM05D007418 ORTHO05D009419 8.6e-52 208.0 205 48.8
AT4G26310 Arabidopsis thaliana HOM05D007418 ORTHO05D009419 1.1e-51 207.6 245 44.1
Glyma.04G122600 Glycine max HOM05D007418 ORTHO05D009419 1.1e-51 207.6 200 49.5
Phvul.001G269400 Phaseolus vulgaris HOM05D007418 ORTHO05D009419 1.9e-51 206.8 201 49.3
AL7G26640 Arabidopsis lyrata HOM05D007418 ORTHO05D009419 3.3e-51 206.1 199 48.7
arahy.Tifrunner.gnm1.ann1.ZH41ZF Arachis hypogaea HOM05D007418 ORTHO05D009419 7.3e-51 204.9 200 49.0
Carub.0007s1463 Capsella rubella HOM05D007418 ORTHO05D009419 7.3e-51 204.9 258 42.6
CARHR233880 Cardamine hirsuta HOM05D007418 ORTHO05D009419 7.3e-51 204.9 199 48.7
BolC5t33821H Brassica oleracea HOM05D007418 ORTHO05D009419 1.2e-50 204.1 199 48.7
BraA05t22194Z Brassica rapa HOM05D007418 ORTHO05D009419 1.2e-50 204.1 199 48.7
Gohir.D05G110400 Gossypium hirsutum HOM05D007418 ORTHO05D009419 1.2e-50 204.1 217 46.1
Sp3g14020 Schrenkiella parvula HOM05D007418 ORTHO05D009419 2.1e-50 203.4 199 49.7
BcaC05g28944 Brassica carinata HOM05D007418 ORTHO05D006651 4.7e-50 202.2 196 49.0
C05p50730 Brassica napus HOM05D007418 ORTHO05D006651 4.7e-50 202.2 196 49.0
Mapoly0009s0101 Marchantia polymorpha HOM05D007418 ORTHO05D009419 4.7e-50 202.2 227 47.1
Cfa019012 Carpinus fangiana HOM05D000059 ORTHO05D000528 6.2e-50 201.8 202 50.0
VMungo0464G0510 Vigna mungo HOM05D007418 ORTHO05D009419 6.2e-50 201.8 200 47.5
Psat5g101120 Pisum sativum HOM05D007418 ORTHO05D009419 1.4e-49 200.7 198 51.0
Nitab4.5_0004630g0080 Nicotiana tabacum HOM05D007418 ORTHO05D009419 1.8e-49 200.3 179 59.2
THA.LOC104817736 Tarenaya hassleriana HOM05D007418 ORTHO05D009419 1.5e-48 197.2 200 47.0
QL01p009000 Quercus lobata HOM05D007418 ORTHO05D009419 2.0e-48 196.8 201 50.7
TPR.G19319 Trifolium pratense HOM05D007418 ORTHO05D009419 2.0e-48 196.8 198 49.0
Medtr3g083530 Medicago truncatula HOM05D007418 ORTHO05D009419 2.6e-48 196.4 198 47.5
Aa31LG11G8030 Aethionema arabicum HOM05D007418 ORTHO05D009419 4.4e-48 195.7 247 40.9
A05p33720 Brassica napus HOM05D007418 ORTHO05D006651 4.4e-48 195.7 196 49.0
arahy.Tifrunner.gnm1.ann1.WR82LC Arachis hypogaea HOM05D007418 ORTHO05D009419 2.9e-47 193.0 227 42.7
Atru.chr3.2092 Acer truncatum HOM05D007418 ORTHO05D009419 3.7e-47 192.6 184 52.2
Lalb_Chr11g0075981 Lupinus albus HOM05D007418 ORTHO05D009419 1.4e-46 190.7 191 51.3
FAN21G2280 Fragaria x ananassa HOM05D007418 ORTHO05D009419 3.2e-46 189.5 248 41.5
FAN25G3222 Fragaria x ananassa HOM05D007418 ORTHO05D009419 5.4e-46 188.7 277 38.6
FAN11G0209 Fragaria x ananassa HOM05D007418 ORTHO05D009419 7.0e-46 188.3 248 41.1
vmacro04241 Vaccinium macrocarpon HOM05D007418 ORTHO05D009419 2.0e-45 186.8 323 36.8
MBI04_g37007_MAGBIO Magnolia biondii HOM05D007418 ORTHO05D009419 6.0e-45 185.3 254 43.7
Potri.001G004300 Populus trichocarpa HOM05D007418 ORTHO05D009419 1.7e-44 183.7 253 40.3
CBR_g28818 Chara braunii HOM05D007418 ORTHO05D009419 6.2e-42 175.3 198 44.4
Sed0010168 Sechium edule HOM05D007418 ORTHO05D009419 6.2e-42 175.3 163 50.9
Nitab4.5_0002351g0010 Nicotiana tabacum HOM05D007418 ORTHO05D009419 3.1e-41 172.9 175 55.4
SMO172G0180 Selaginella moellendorffii HOM05D007418 ORTHO05D009419 4.0e-41 172.6 198 43.9
AagrBONN_evm.TU.Sc2ySwM_344.2531 Anthoceros agrestis HOM05D007418 ORTHO05D009419 5.2e-41 172.2 166 51.2
Hma1.2p1_0062F.1_g034220 Hydrangea macrophylla HOM05D007418 ORTHO05D009419 3.4e-40 169.5 137 58.4
CiPaw.13G176700 Carya illinoinensis HOM05D007418 ORTHO05D009419 1.7e-39 167.2 163 49.1
Haze_07392 Corylus avellana HOM05D007418 ORTHO05D009419 2.1e-37 160.2 323 31.9
HPP92_000821 Vanilla planifolia HOM05D007418 ORTHO05D009419 4.6e-37 159.1 167 49.1
Sabra01G0003000 Salix brachista HOM05D007418 ORTHO05D009419 3.0e-36 156.4 251 35.9
Sc06g0004180 Simmondsia chinensis HOM05D007418 ORTHO05D009419 1.9e-35 153.7 122 56.6
Nitab4.5_0004630g0090 Nicotiana tabacum HOM05D007418 ORTHO05D009419 1.6e-21 107.5 80 62.5
Rhsim13G0232600 Rhododendron simsii HOM05D007418 ORTHO05D009419 1.7e-20 104.0 75 65.3
Cre06.g263050 Chlamydomonas reinhardtii HOM05D007418 ORTHO05D009419 9.6e-19 98.2 199 28.6
MCO01G577 Micromonas commoda HOM05D005727 ORTHO05D009419 9.6e-19 98.2 185 33.5
MD03G1004200 Malus domestica HOM05D007418 ORTHO05D009419 5.3e-17 92.4 237 28.3
QL04p006930 Quercus lobata HOM05D007418 ORTHO05D009419 5.8e-16 89.0 93 48.4
CBR_g46434 Chara braunii HOM05D005727 ORTHO05D007324 7.6e-16 88.6 185 30.3
Lj1g0000237 Lotus japonicus HOM05D005727 ORTHO05D007324 6.4e-15 85.5 183 25.7
CiPaw.09G221300 Carya illinoinensis HOM05D005727 ORTHO05D007324 8.4e-15 85.1 205 26.8
ATR1127G235 Amborella trichopoda HOM05D005727 ORTHO05D007324 1.9e-14 84.0 190 28.4
Phvul.008G082900 Phaseolus vulgaris HOM05D005727 ORTHO05D007324 2.4e-14 83.6 185 27.6
Lalb_Chr01g0023751 Lupinus albus HOM05D005727 ORTHO05D007324 4.2e-14 82.8 198 26.8
GSVIVG01030181001 Vitis vinifera HOM05D005727 ORTHO05D007324 5.4e-14 82.4 187 26.2
Manes.08G171300 Manihot esculenta HOM05D005727 ORTHO05D007324 7.1e-14 82.0 183 28.4
VMungo1383G0728 Vigna mungo HOM05D005727 ORTHO05D007324 9.3e-14 81.6 185 27.0
EL10Ac7g17100 Beta vulgaris HOM05D005727 ORTHO05D007324 1.2e-13 81.3 183 26.2
Haze_21174 Corylus avellana HOM05D005727 ORTHO05D007324 1.6e-13 80.9 183 26.2
Hund19761 Selenicereus undatus HOM05D005727 ORTHO05D007324 1.6e-13 80.9 197 25.9
Nn2g10300 Nelumbo nucifera HOM05D005727 ORTHO05D007324 2.1e-13 80.5 187 26.7
Sabra04G0153300 Salix brachista HOM05D005727 ORTHO05D007324 2.1e-13 80.5 199 26.1
Ah.15g090030 Amaranthus hybridus HOM05D005727 ORTHO05D007324 2.7e-13 80.1 184 26.6
PGR031G0696 Punica granatum HOM05D005727 ORTHO05D007324 2.7e-13 80.1 186 26.9
Sed0002775 Sechium edule HOM05D005727 ORTHO05D007324 2.7e-13 80.1 189 25.4
PGSC0003DMG400031234 Solanum tuberosum HOM05D005727 ORTHO05D007324 2.7e-13 80.1 189 28.0
TPR.G14131 Trifolium pratense HOM05D005727 ORTHO05D007324 2.7e-13 80.1 184 27.2
CAN.G487.5 Capsicum annuum HOM05D005727 ORTHO05D007324 4.6e-13 79.3 189 28.0
Cpa.g.sc86.59 Carica papaya HOM05D005727 ORTHO05D007324 4.6e-13 79.3 183 26.2
Glyma.18G213900 Glycine max HOM05D005727 ORTHO05D007324 4.6e-13 79.3 192 25.0
MELO3C009104.2 Cucumis melo HOM05D005727 ORTHO05D007324 6.0e-13 79.0 185 25.9
Solyc10g075020.3 Solanum lycopersicum HOM05D005727 ORTHO05D007324 6.0e-13 79.0 189 27.5
Sopen10g027500 Solanum pennellii HOM05D005727 ORTHO05D007324 6.0e-13 79.0 189 27.5
Mapoly0080s0087 Marchantia polymorpha HOM05D005727 ORTHO05D007324 7.9e-13 78.6 183 26.2
Sc02g0000150 Simmondsia chinensis HOM05D005727 ORTHO05D007324 7.9e-13 78.6 228 25.0
Cfa017035 Carpinus fangiana HOM05D005727 ORTHO05D007324 1.0e-12 78.2 183 26.2
AagrBONN_evm.TU.Sc2ySwM_228.1047 Anthoceros agrestis HOM05D005727 ORTHO05D007324 1.3e-12 77.8 183 27.3
Glyma.09G275000 Glycine max HOM05D005727 ORTHO05D007324 1.3e-12 77.8 192 25.0
Psat3g118920 Pisum sativum HOM05D005727 ORTHO05D007324 1.8e-12 77.4 185 26.5
Ciclev10012658m.g Citrus clementina HOM05D005727 ORTHO05D007324 2.3e-12 77.0 187 27.3
Gohir.A09G213660 Gossypium hirsutum HOM05D005727 ORTHO05D007324 2.3e-12 77.0 192 25.0
Gohir.D09G215000 Gossypium hirsutum HOM05D005727 ORTHO05D007324 2.3e-12 77.0 192 25.0
Gorai.006G235400 Gossypium raimondii HOM05D005727 ORTHO05D007324 2.3e-12 77.0 192 25.0
DCAR_023975 Daucus carota HOM05D005727 ORTHO05D007324 3.0e-12 76.6 199 25.6
Atru.chr8.117 Acer truncatum HOM05D005727 ORTHO05D007324 3.9e-12 76.3 183 26.2
QL07p032118 Quercus lobata HOM05D005727 ORTHO05D007324 3.9e-12 76.3 188 25.5
arahy.Tifrunner.gnm1.ann1.FBM6UZ Arachis hypogaea HOM05D005727 ORTHO05D007324 5.1e-12 75.9 192 24.5
AUR62006416 Chenopodium quinoa HOM05D005727 ORTHO05D007324 5.1e-12 75.9 183 25.1
FAN16G1782 Fragaria x ananassa HOM05D007418 ORTHO05D009419 6.7e-12 75.5 77 50.6
Lsat_1_v5_gn_5_152381 Lactuca sativa HOM05D005727 ORTHO05D007324 8.7e-12 75.1 187 25.7
Potri.016G136600 Populus trichocarpa HOM05D005727 ORTHO05D007324 8.7e-12 75.1 183 25.7
Dinv16978 Davidia involucrata HOM05D005727 ORTHO05D007324 1.1e-11 74.7 187 24.1
TWI53G1599 Tripterygium wilfordii HOM05D005727 ORTHO05D007324 1.1e-11 74.7 185 25.4
HPP92_018087 Vanilla planifolia HOM05D005727 ORTHO05D007324 1.1e-11 74.7 183 25.1
SMO358G0605 Selaginella moellendorffii HOM05D005727 ORTHO05D007324 1.5e-11 74.3 184 27.2
A10p33800 Brassica napus HOM05D005727 ORTHO05D007324 1.9e-11 73.9 183 24.0
CANSAT35G1579 Cannabis sativa HOM05D005727 ORTHO05D007324 2.5e-11 73.6 186 25.8
C09p74740 Brassica napus HOM05D005727 ORTHO05D007324 3.3e-11 73.2 183 24.0
Thecc.04G151700 Theobroma cacao HOM05D005727 ORTHO05D007324 4.3e-11 72.8 183 25.1
BolC3t14633H Brassica oleracea HOM05D005727 ORTHO05D007324 5.6e-11 72.4 183 24.0
Medtr7g073250 Medicago truncatula HOM05D005727 ORTHO05D007324 5.6e-11 72.4 187 25.1
BcaC06g31951 Brassica carinata HOM05D005727 ORTHO05D007324 7.4e-11 72.0 183 24.0
BcaNung03303 Brassica carinata HOM05D005727 ORTHO05D007324 9.6e-11 71.6 183 23.5
BcaNung03307 Brassica carinata HOM05D005727 ORTHO05D007324 9.6e-11 71.6 183 23.5
Nitab4.5_0010794g0010 Nicotiana tabacum HOM05D005727 ORTHO05D007324 9.6e-11 71.6 183 25.7
SHI31291 Sapria himalayana HOM05D007418 ORTHO05D009419 1.6e-10 70.9 83 39.8
AUR62029764 Chenopodium quinoa HOM05D005727 ORTHO05D007324 2.8e-10 70.1 193 23.8
Prupe.6G293500 Prunus persica HOM05D005727 ORTHO05D007324 6.2e-10 68.9 187 26.2
Peaxi162Scf01238g00221 Petunia axillaris HOM05D005727 ORTHO05D007324 3.1e-09 66.6 209 24.4
arahy.Tifrunner.gnm1.ann1.CT9SCB Arachis hypogaea HOM05D005727 ORTHO05D007324 4.0e-09 66.2 200 24.0
Sp6g41120 Schrenkiella parvula HOM05D005727 ORTHO05D007324 5.3e-09 65.9 197 23.4
Eucgr.A00739 Eucalyptus grandis HOM05D005727 ORTHO05D007324 9.0e-09 65.1 207 22.7
Ca_16215_v3 Cicer arietinum L. HOM05D009845 ORTHO05D010624 4.5e-08 62.8 76 43.4
TPR.G6905 Trifolium pratense HOM05D009845 ORTHO05D010624 4.5e-08 62.8 64 48.4
Medtr3g078610 Medicago truncatula HOM05D009845 ORTHO05D010624 2.4e-06 57.0 54 51.9
Psat5g113560 Pisum sativum HOM05D009845 ORTHO05D010624 4.2e-06 56.2 76 38.2
SEGI_30349 Sequoiadendron giganteum HOM05D005727 ORTHO05D007324 5.5e-06 55.8 129 30.2
Lj1g0026374 Lotus japonicus HOM05D009845 ORTHO05D010624 9.3e-06 55.1 53 47.2


User provided reference genes

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