Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.20929 Avicennia marina HOM05D003400 ORTHO05D003687 7.0e-84 313.9 160 100.0
MSTRG.8889 Avicennia marina HOM05D003400 ORTHO05D003687 3.2e-52 208.8 104 100.0
MSTRG.171 Avicennia marina HOM05D003400 ORTHO05D003687 7.6e-30 134.4 161 51.6
SalBow3G2848 Salvia bowleyana HOM05D003400 ORTHO05D003687 1.1e-28 130.6 152 51.3
SGA_v2.0_scaffold44G16620 Striga asiatica HOM05D003400 ORTHO05D003687 3.2e-28 129.0 160 49.4
Migut.F00607 Erythranthe guttata HOM05D003400 ORTHO05D003687 2.1e-27 126.3 161 50.9
Peaxi162Scf00739g00321 Petunia axillaris HOM05D003400 ORTHO05D003687 4.9e-21 105.1 145 42.8
Nitab4.5_0002745g0010 Nicotiana tabacum HOM05D003400 ORTHO05D003687 5.5e-20 101.7 161 41.6
Lj1C967G2 Lonicera japonica HOM05D003400 ORTHO05D003687 2.1e-19 99.8 178 40.4
Nitab4.5_0000171g0020 Nicotiana tabacum HOM05D003400 ORTHO05D003687 6.0e-19 98.2 161 40.4
Solyc06g048970.3 Solanum lycopersicum HOM05D003400 ORTHO05D003687 6.0e-19 98.2 150 42.7
Sopen06g015320 Solanum pennellii HOM05D003400 ORTHO05D003687 2.3e-18 96.3 150 42.0
CAN.G24.15 Capsicum annuum HOM05D003400 ORTHO05D003687 4.3e-17 92.0 161 37.9
PGSC0003DMG400016640 Solanum tuberosum HOM05D003400 ORTHO05D003687 1.6e-16 90.1 141 41.8
SGA_v2.0_scaffold60G20888 Striga asiatica HOM05D003400 ORTHO05D003687 4.0e-15 85.5 144 43.8
Cc02_g05370 Coffea canephora HOM05D003400 ORTHO05D003687 5.3e-15 85.1 163 39.9
Oeu063984.1 Olea europaea HOM05D003400 ORTHO05D003687 6.9e-15 84.7 118 48.3
MSTRG.8378 Avicennia marina HOM05D003400 ORTHO05D003687 9.0e-15 84.3 131 44.3
Dinv21846 Davidia involucrata HOM05D003400 ORTHO05D003687 1.1e-12 77.4 190 33.2
Atru.chr12.183 Acer truncatum HOM05D003400 ORTHO05D003687 2.5e-12 76.3 201 33.8
Actinidia01000 Actinidia chinensis HOM05D003400 ORTHO05D003687 4.2e-12 75.5 174 34.5
Rhsim09G0185900 Rhododendron simsii HOM05D003400 ORTHO05D003687 1.2e-11 73.9 146 36.3
vmacro09957 Vaccinium macrocarpon HOM05D003400 ORTHO05D003687 2.7e-11 72.8 156 37.8
QL08p064852 Quercus lobata HOM05D003400 ORTHO05D003687 7.9e-11 71.2 188 31.4
Oeu006054.1 Olea europaea HOM05D003400 ORTHO05D003687 3.0e-10 69.3 82 45.1
GSVIVG01032673001 Vitis vinifera HOM05D003400 ORTHO05D003687 1.5e-09 67.0 177 32.8
Thecc.10G181000 Theobroma cacao HOM05D003400 ORTHO05D003687 1.9e-09 66.6 179 35.8
Haze_17357 Corylus avellana HOM05D003400 ORTHO05D003687 9.7e-09 64.3 187 32.1
Duzib114G0186 Durio zibethinus HOM05D003400 ORTHO05D003687 9.7e-09 64.3 143 38.5
COL.COLO4_19367 Corchorus olitorius HOM05D003400 ORTHO05D003687 1.3e-08 63.9 174 31.6
ECA232G0413 Erigeron canadensis HOM05D003400 ORTHO05D003687 1.3e-08 63.9 140 37.9
arahy.Tifrunner.gnm1.ann1.JMN63H Arachis hypogaea HOM05D003400 ORTHO05D003687 2.2e-08 63.2 183 31.7
CSS0037757 Camellia sinensis var. sinensis HOM05D003400 ORTHO05D003687 2.8e-08 62.8 177 32.2
Rhsim03G0152100 Rhododendron simsii HOM05D003400 ORTHO05D003687 2.8e-08 62.8 89 42.7
Prupe.2G264100 Prunus persica HOM05D003400 ORTHO05D003687 3.7e-08 62.4 187 32.6
Dinv34484 Davidia involucrata HOM05D003400 ORTHO05D003687 4.8e-08 62.0 108 39.8
MD01G1167700 Malus domestica HOM05D003400 ORTHO05D003687 6.3e-08 61.6 181 31.5
arahy.Tifrunner.gnm1.ann1.45IBUQ Arachis hypogaea HOM05D003400 ORTHO05D003687 8.2e-08 61.2 183 31.1
Rhsim03G0152500 Rhododendron simsii HOM05D003400 ORTHO05D003687 8.2e-08 61.2 177 36.2
FAN03G2499 Fragaria x ananassa HOM05D003400 ORTHO05D003687 3.1e-07 59.3 89 46.1
Gohir.D04G012500 Gossypium hirsutum HOM05D003400 ORTHO05D003687 3.1e-07 59.3 174 32.8
Gorai.012G014800 Gossypium raimondii HOM05D003400 ORTHO05D003687 3.1e-07 59.3 174 32.8
vmacro06891 Vaccinium macrocarpon HOM05D003400 ORTHO05D003687 3.1e-07 59.3 89 40.4
FvH4_7g25930 Fragaria vesca HOM05D003400 ORTHO05D003687 5.3e-07 58.5 144 34.7
FAN06G1869 Fragaria x ananassa HOM05D003400 ORTHO05D003687 5.3e-07 58.5 144 34.7
Gohir.A05G403000 Gossypium hirsutum HOM05D003400 ORTHO05D003687 5.3e-07 58.5 174 32.8
TAR623G0519 Trochodendron aralioides HOM05D003400 ORTHO05D003687 5.3e-07 58.5 201 31.8
RcHm_v2.0_Chr1g0372301 Rosa chinensis HOM05D003400 ORTHO05D003687 6.9e-07 58.2 90 45.6
TAR369G0853 Trochodendron aralioides HOM05D003400 ORTHO05D003687 6.9e-07 58.2 201 28.4
Actinidia07793 Actinidia chinensis HOM05D003400 ORTHO05D003687 9.0e-07 57.8 126 31.7
Cpa.g.sc19.58 Carica papaya HOM05D003400 ORTHO05D003687 9.0e-07 57.8 120 37.5
Hma1.2p1_0264F.1_g106160 Hydrangea macrophylla HOM05D003400 ORTHO05D003687 9.0e-07 57.8 180 30.6
Lj8C54T21 Lonicera japonica HOM05D003400 ORTHO05D003687 1.2e-06 57.4 57 47.4
Sabra19G0073600 Salix brachista HOM05D003400 ORTHO05D003687 1.5e-06 57.0 182 29.7
Actinidia31626 Actinidia chinensis HOM05D003400 ORTHO05D003687 3.4e-06 55.8 156 33.3
EL10Ac3g07235 Beta vulgaris HOM05D003400 ORTHO05D003687 3.4e-06 55.8 141 32.6
Potri.019G058200 Populus trichocarpa HOM05D003400 ORTHO05D003687 3.4e-06 55.8 184 28.3
FAN01G0709 Fragaria x ananassa HOM05D003400 ORTHO05D003687 4.5e-06 55.5 136 36.8
Hma1.2p1_0292F.1_g115970 Hydrangea macrophylla HOM05D003400 ORTHO05D003687 7.7e-06 54.7 181 27.1


User provided reference genes

Program Settings