Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.20784 Avicennia marina HOM05D004815 ORTHO05D005742 2.5e-209 731.9 367 100.0
SalBow7G0216 Salvia bowleyana HOM05D004815 ORTHO05D005742 2.3e-151 539.3 410 68.0
Migut.B01673 Erythranthe guttata HOM05D004815 ORTHO05D005742 1.3e-141 506.9 367 70.8
SGA_v2.0_scaffold153G37057 Striga asiatica HOM05D004815 ORTHO05D005742 3.8e-141 505.4 367 71.1
Cc02_g37080 Coffea canephora HOM05D004815 ORTHO05D005742 2.2e-133 479.6 371 64.7
Oeu059223.1 Olea europaea HOM05D003859 ORTHO05D004927 1.6e-131 473.4 369 66.9
Ciclev10020702m.g Citrus clementina HOM05D004815 ORTHO05D005742 1.3e-130 470.3 372 65.3
Cc09_g02920 Coffea canephora HOM05D004815 ORTHO05D005742 9.6e-129 464.2 370 64.1
MD02G1195800 Malus domestica HOM05D004815 ORTHO05D005742 2.8e-128 462.6 370 63.0
TAR629G0568 Trochodendron aralioides HOM05D004815 ORTHO05D005742 6.2e-128 461.5 371 64.4
Atru.chr5.381_Atru.chr5.382 Acer truncatum HOM05D004815 ORTHO05D005742 1.8e-127 459.9 369 64.2
Haze_16704 Corylus avellana HOM05D004815 ORTHO05D005742 5.3e-127 458.4 369 62.9
Lj7C524T7 Lonicera japonica HOM05D004815 ORTHO05D005742 1.2e-126 457.2 369 64.2
CiPaw.01G257600 Carya illinoinensis HOM05D004815 ORTHO05D005742 5.8e-126 454.9 370 63.0
Cpa.g.sc18.178 Carica papaya HOM05D004815 ORTHO05D005742 1.7e-125 453.4 371 62.8
Actinidia31455 Actinidia chinensis HOM05D004815 ORTHO05D005742 2.9e-125 452.6 375 60.5
RcHm_v2.0_Chr1g0351921 Rosa chinensis HOM05D004815 ORTHO05D005742 2.9e-125 452.6 370 61.4
Potri.014G078300 Populus trichocarpa HOM05D004815 ORTHO05D005742 1.1e-124 450.7 369 62.9
Cfa001810 Carpinus fangiana HOM05D004815 ORTHO05D005742 1.9e-124 449.9 374 61.0
unitig_749.g14360 Utricularia gibba HOM05D003518 ORTHO05D005164 3.2e-124 449.1 346 67.1
arahy.Tifrunner.gnm1.ann1.GZV6IQ Arachis hypogaea HOM05D004815 ORTHO05D005742 4.2e-124 448.7 369 61.0
Nitab4.5_0013229g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 5.5e-124 448.4 369 60.4
PGSC0003DMG400000005 Solanum tuberosum HOM05D004815 ORTHO05D005742 6.0e-123 444.9 370 60.8
GSVIVG01027589001 Vitis vinifera HOM05D004815 ORTHO05D005742 6.0e-123 444.9 370 61.6
TWI23G0970 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 7.9e-123 444.5 369 61.0
CANSAT56G0719 Cannabis sativa HOM05D004815 ORTHO05D005742 1.3e-122 443.7 370 60.5
Potri.002G152300 Populus trichocarpa HOM05D004815 ORTHO05D005742 1.8e-122 443.4 371 62.3
Sabra14G0053800 Salix brachista HOM05D004815 ORTHO05D005742 1.8e-122 443.4 375 61.6
Manes.01G263200 Manihot esculenta HOM05D004815 ORTHO05D005742 6.7e-122 441.4 370 61.6
Lj3g0020425 Lotus japonicus HOM05D004815 ORTHO05D005742 1.5e-121 440.3 369 59.9
Solyc01g091900.3 Solanum lycopersicum HOM05D004815 ORTHO05D005742 1.5e-121 440.3 374 60.4
TWI59G0538 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 2.5e-121 439.5 370 59.5
arahy.Tifrunner.gnm1.ann1.32Q5MD Arachis hypogaea HOM05D004815 ORTHO05D005742 5.6e-121 438.3 369 60.2
CAN.G170.62 Capsicum annuum HOM05D004815 ORTHO05D005742 9.6e-121 437.6 371 59.8
FAN01G1324 Fragaria x ananassa HOM05D004815 ORTHO05D005742 1.3e-120 437.2 370 60.0
Manes.05G040900 Manihot esculenta HOM05D004815 ORTHO05D005742 1.6e-120 436.8 369 60.2
Glyma.03G018700 Glycine max HOM05D004815 ORTHO05D005742 2.8e-120 436.0 369 59.6
Gorai.001G172600 Gossypium raimondii HOM05D004815 ORTHO05D005742 2.8e-120 436.0 371 59.8
Lalb_Chr17g0340041 Lupinus albus HOM05D004815 ORTHO05D005742 3.7e-120 435.6 369 58.5
FAN10G2694 Fragaria x ananassa HOM05D004815 ORTHO05D005742 4.8e-120 435.3 370 60.0
MELO3C022521.2 Cucumis melo HOM05D004815 ORTHO05D005742 1.1e-119 434.1 373 58.2
CsaV3_6G005940 Cucumis sativus L. HOM05D004815 ORTHO05D005742 1.8e-119 433.3 370 58.1
DCAR_006900 Daucus carota HOM05D004815 ORTHO05D005742 2.4e-119 433.0 346 63.3
Thecc.01G370200 Theobroma cacao HOM05D004815 ORTHO05D005742 3.1e-119 432.6 368 60.6
Gohir.A07G144600 Gossypium hirsutum HOM05D004815 ORTHO05D005742 4.0e-119 432.2 371 59.6
TAR636G2513 Trochodendron aralioides HOM05D004815 ORTHO05D005742 4.0e-119 432.2 369 60.7
Ca_23774_v3 Cicer arietinum L. HOM05D004815 ORTHO05D005742 6.9e-119 431.4 369 59.1
Aqoxy7G00483 Aquilegia oxysepala HOM05D004815 ORTHO05D005742 2.0e-118 429.9 372 59.7
Medtr8g033040 Medicago truncatula HOM05D004815 ORTHO05D005742 2.0e-118 429.9 369 58.5
PGR031G2979 Punica granatum HOM05D004815 ORTHO05D005742 2.0e-118 429.9 372 58.9
TPR.G17395 Trifolium pratense HOM05D004815 ORTHO05D005742 2.0e-118 429.9 369 58.5
Gohir.D07G150500 Gossypium hirsutum HOM05D004815 ORTHO05D005742 3.4e-118 429.1 371 59.6
Duzib133G0793 Durio zibethinus HOM05D004815 ORTHO05D005742 5.8e-118 428.3 372 59.1
AUR62033376 Chenopodium quinoa HOM05D004815 ORTHO05D005742 1.0e-117 427.6 370 60.3
ECA236G5005 Erigeron canadensis HOM05D004815 ORTHO05D005742 2.2e-117 426.4 371 59.8
TPR.G17590 Trifolium pratense HOM05D004815 ORTHO05D005742 1.1e-116 424.1 366 58.5
VMungo0331G0142 Vigna mungo HOM05D004815 ORTHO05D005742 1.4e-116 423.7 369 59.1
HanXRQChr06g0169351 Helianthus annuus HOM05D004815 ORTHO05D005742 2.7e-115 419.5 369 58.5
Lalb_Chr10g0097591 Lupinus albus HOM05D004815 ORTHO05D005742 6.0e-115 418.3 369 57.5
EL10Ac1g00976 Beta vulgaris HOM05D004815 ORTHO05D005742 1.1e-113 414.1 371 59.0
Sed0027777 Sechium edule HOM05D004815 ORTHO05D005742 1.1e-113 414.1 376 55.3
Peaxi162Scf00021g00232 Petunia axillaris HOM05D004815 ORTHO05D005742 1.5e-113 413.7 350 60.6
FAN06G3277 Fragaria x ananassa HOM05D004815 ORTHO05D005742 2.5e-113 412.9 367 57.8
FAN06G3416 Fragaria x ananassa HOM05D004815 ORTHO05D005742 2.5e-113 412.9 367 57.8
PSO478G4379 Papaver somniferum HOM05D004815 ORTHO05D005742 9.6e-113 411.0 373 56.6
Solyc06g074460.4 Solanum lycopersicum HOM05D004815 ORTHO05D005742 6.3e-112 408.3 370 54.3
Rhsim07G0022400 Rhododendron simsii HOM05D004815 ORTHO05D005742 8.2e-112 407.9 362 58.6
Aa31LG1G27160 Aethionema arabicum HOM05D004815 ORTHO05D005742 1.4e-111 407.1 373 57.4
Glyma.07G080200 Glycine max HOM05D004815 ORTHO05D005742 2.4e-111 406.4 352 59.4
Sopen06g030930 Solanum pennellii HOM05D004815 ORTHO05D005742 5.9e-110 401.7 370 53.2
Hund27330 Selenicereus undatus HOM05D004815 ORTHO05D005742 2.9e-109 399.4 384 56.5
Lsat_1_v5_gn_7_8041 Lactuca sativa HOM05D004815 ORTHO05D005742 3.8e-109 399.1 352 59.1
PSO782G2788 Papaver somniferum HOM05D004815 ORTHO05D005742 8.5e-109 397.9 373 55.8
AL4G44860 Arabidopsis lyrata HOM05D004815 ORTHO05D005742 4.2e-108 395.6 376 57.4
MBI04_g28567_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 4.2e-108 395.6 361 57.3
Carub.0004s2834 Capsella rubella HOM05D004815 ORTHO05D005742 7.2e-108 394.8 378 56.1
CAN.G919.13 Capsicum annuum HOM05D004815 ORTHO05D005742 3.6e-107 392.5 370 53.0
Thhalv10001499m.g Eutrema salsugineum HOM05D004815 ORTHO05D005742 3.6e-107 392.5 375 55.5
BcaB01g03258 Brassica carinata HOM05D004815 ORTHO05D005742 7.9e-107 391.3 371 54.4
A05p05650 Brassica napus HOM05D004815 ORTHO05D005742 6.7e-106 388.3 381 55.1
BraA05t19537Z Brassica rapa HOM05D004815 ORTHO05D005742 8.7e-106 387.9 380 55.5
BcaB02g09018 Brassica carinata HOM05D004815 ORTHO05D005742 1.5e-105 387.1 388 53.6
Sp4g27730 Schrenkiella parvula HOM05D004815 ORTHO05D005742 1.5e-105 387.1 377 54.6
BcaC02g12192 Brassica carinata HOM05D004815 ORTHO05D005742 4.3e-105 385.6 377 54.4
HanXRQChr04g0121731 Helianthus annuus HOM05D004815 ORTHO05D005742 4.3e-105 385.6 349 57.0
AT2G45690 Arabidopsis thaliana HOM05D004815 ORTHO05D005742 5.7e-105 385.2 375 55.7
Sc02g0002260 Simmondsia chinensis HOM05D004815 ORTHO05D005742 5.7e-105 385.2 358 55.9
BolC4t22283H Brassica oleracea HOM05D004815 ORTHO05D005742 9.7e-105 384.4 377 54.4
A03p25310 Brassica napus HOM05D004815 ORTHO05D005742 2.2e-104 383.3 374 53.5
Nitab4.5_0001901g0030 Nicotiana tabacum HOM05D004815 ORTHO05D005742 2.8e-104 382.9 370 52.7
Nitab4.5_0005459g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 2.8e-104 382.9 394 51.5
vmacro13348 Vaccinium macrocarpon HOM05D004815 ORTHO05D005742 8.2e-104 381.3 403 52.1
ClCG06G000170 Citrullus lanatus HOM05D004815 ORTHO05D005742 1.1e-103 380.9 374 53.2
Sabra02G0120600 Salix brachista HOM05D004815 ORTHO05D005742 1.4e-103 380.6 371 55.5
C03p30200 Brassica napus HOM05D004815 ORTHO05D005742 3.1e-103 379.4 380 53.7
Psat4g200880 Pisum sativum HOM05D004815 ORTHO05D005742 3.1e-103 379.4 348 56.0
Lalb_Chr19g0127171 Lupinus albus HOM05D004815 ORTHO05D005742 5.3e-103 378.6 374 52.9
BcaC01g05112 Brassica carinata HOM05D004815 ORTHO05D005742 4.5e-102 375.6 381 53.3
Phvul.010G089200 Phaseolus vulgaris HOM05D004815 ORTHO05D005742 5.9e-102 375.2 346 57.8
QL08p050919 Quercus lobata HOM05D004815 ORTHO05D005742 1.3e-101 374.0 349 57.0
BolC3t15369H Brassica oleracea HOM05D004815 ORTHO05D005742 1.7e-101 373.6 380 53.4
Nn1g01309 Nelumbo nucifera HOM05D004815 ORTHO05D005742 2.2e-101 373.2 324 58.3
Actinidia09581 Actinidia chinensis HOM05D004815 ORTHO05D005742 2.5e-100 369.8 321 57.3
BraA03t11735Z Brassica rapa HOM05D004815 ORTHO05D005742 1.4e-98 364.0 377 52.5
Peaxi162Scf00114g00211 Petunia axillaris HOM05D004815 ORTHO05D005742 3.9e-98 362.5 346 53.8
Sopen01g037670 Solanum pennellii HOM05D004815 ORTHO05D005742 1.3e-96 357.5 326 58.0
FvH4_7g12840 Fragaria vesca HOM05D004815 ORTHO05D005742 4.8e-96 355.5 329 55.9
Duzib138G1778 Durio zibethinus HOM05D004815 ORTHO05D005742 2.4e-95 353.2 349 54.4
Ciclev10023945m.g Citrus clementina HOM05D004815 ORTHO05D005742 5.3e-95 352.1 371 53.1
AUR62004281 Chenopodium quinoa HOM05D004815 ORTHO05D005742 2.0e-94 350.1 370 52.2
Prupe.2G152800 Prunus persica HOM05D004815 ORTHO05D005742 4.5e-94 349.0 301 59.5
C04p06610 Brassica napus HOM05D004815 ORTHO05D005742 7.7e-94 348.2 356 52.2
Zm00001eb208530 Zea mays HOM05D004815 ORTHO05D005742 1.0e-93 347.8 384 48.2
HPP92_004960 Vanilla planifolia HOM05D004815 ORTHO05D005742 2.5e-92 343.2 371 47.7
THA.LOC104817269 Tarenaya hassleriana HOM05D004815 ORTHO05D005742 7.2e-92 341.7 332 54.8
MD02G1195700 Malus domestica HOM05D004815 ORTHO05D005742 1.5e-89 334.0 329 53.8
Nitab4.5_0001127g0010 Nicotiana tabacum HOM05D004815 ORTHO05D005742 2.4e-87 326.6 369 50.1
Ah.15g094120 Amaranthus hybridus HOM05D001215 ORTHO05D001387 4.1e-87 325.9 361 51.2
Sed0004795 Sechium edule HOM05D004815 ORTHO05D005742 6.5e-85 318.5 306 55.2
Lalb_Chr01g0021231 Lupinus albus HOM05D004815 ORTHO05D005742 2.7e-83 313.2 372 45.2
SEGI_15318 Sequoiadendron giganteum HOM05D004815 ORTHO05D005742 2.9e-77 293.1 382 42.4
Dinv43746 Davidia involucrata HOM05D004815 ORTHO05D005742 1.1e-76 291.2 293 52.6
Mapoly0047s0037 Marchantia polymorpha HOM05D004815 ORTHO05D005742 9.8e-73 278.1 405 40.2
Os02g0123200 Oryza sativa ssp. japonica HOM05D004815 ORTHO05D005742 1.7e-72 277.3 345 44.3
SHI13492 Sapria himalayana HOM05D004815 ORTHO05D005742 1.7e-69 267.3 478 38.3
CARHR140910 Cardamine hirsuta HOM05D004815 ORTHO05D005742 2.8e-67 260.0 293 49.8
COL.COLO4_12639 Corchorus olitorius HOM05D004815 ORTHO05D005742 1.8e-66 257.3 213 61.0
SMO147G0187 Selaginella moellendorffii HOM05D004815 ORTHO05D005742 1.2e-65 254.6 386 37.3
AagrBONN_evm.TU.Sc2ySwM_228.5506 Anthoceros agrestis HOM05D004815 ORTHO05D005742 2.2e-64 250.4 396 38.6
Eucgr.D02393 Eucalyptus grandis HOM05D004815 ORTHO05D005742 4.9e-64 249.2 241 56.4
PGSC0003DMG400007146 Solanum tuberosum HOM05D004815 ORTHO05D005742 5.4e-63 245.7 260 49.6
Dinv32412 Davidia involucrata HOM05D004815 ORTHO05D005742 2.0e-62 243.8 259 52.9
CSS0047010 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 3.8e-61 239.6 275 50.9
CSS0023679 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 2.3e-58 230.3 287 47.7
CDE11G0368 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 4.4e-57 226.1 194 57.7
ATR0757G223 Amborella trichopoda HOM05D004815 ORTHO05D005742 1.1e-55 221.5 236 53.0
Eucgr.D02410 Eucalyptus grandis HOM05D004815 ORTHO05D005742 4.6e-54 216.1 239 51.5
Pp3c20_6130 Physcomitrium patens HOM05D004815 ORTHO05D005742 9.5e-52 208.4 334 35.6
Gohir.A11G084200 Gossypium hirsutum HOM05D004815 ORTHO05D005742 8.0e-51 205.3 254 46.1
AagrBONN_evm.TU.Sc2ySwM_369.172 Anthoceros agrestis HOM05D004815 ORTHO05D005742 2.2e-48 197.2 381 34.4
Eucgr.D02397 Eucalyptus grandis HOM05D004815 ORTHO05D005742 3.0e-45 186.8 212 51.4
CDE11G0585 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 9.5e-44 181.8 139 61.9
FAN10G0991 Fragaria x ananassa HOM05D004815 ORTHO05D005742 4.7e-43 179.5 117 70.9
ATR0757G181 Amborella trichopoda HOM05D004815 ORTHO05D005742 5.8e-41 172.6 156 55.1
PRCOL_00005618 Prasinoderma coloniale HOM05D004815 ORTHO05D005742 6.2e-27 125.9 429 25.9
CBR_g3181 Chara braunii HOM05D004815 ORTHO05D005742 4.2e-23 113.2 202 30.7
Aa31LG6G10720 Aethionema arabicum HOM05D004815 ORTHO05D005742 2.7e-22 110.5 151 46.4
Glyma.04G148600 Glycine max HOM05D004815 ORTHO05D005742 6.0e-22 109.4 72 72.2
COL.COLO4_24134 Corchorus olitorius HOM05D000638 ORTHO05D000801 1.2e-14 85.1 107 47.7
Aa31sc1021G10 Aethionema arabicum HOM05D004815 ORTHO05D005742 2.7e-14 84.0 120 41.7
Lj3g0018651 Lotus japonicus HOM05D004815 ORTHO05D005742 7.9e-14 82.4 42 90.5
MBI11_g13051_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 7.1e-07 59.3 61 54.1
C07p07230 Brassica napus HOM05D004815 ORTHO05D005742 6.0e-06 56.2 57 47.4


User provided reference genes

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