Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.20759 Avicennia marina HOM05D004001 ORTHO05D004559 0.0e+00 1677.1 963 100.0
SalBow5G4135 Salvia bowleyana HOM05D004001 ORTHO05D004559 1.6e-308 1062.8 967 67.6
Dinv32391 Davidia involucrata HOM05D004001 ORTHO05D004559 1.9e-269 932.9 967 59.7
Nitab4.5_0010473g0020 Nicotiana tabacum HOM05D004001 ORTHO05D004559 2.8e-260 902.5 981 59.2
Migut.B01647 Erythranthe guttata HOM05D004001 ORTHO05D004559 2.3e-259 899.4 974 62.2
Actinidia12272 Actinidia chinensis HOM05D004001 ORTHO05D004559 9.9e-258 894.0 979 57.0
Actinidia31422 Actinidia chinensis HOM05D004001 ORTHO05D004559 8.3e-257 891.0 949 58.2
Solyc01g091500.3 Solanum lycopersicum HOM05D004001 ORTHO05D004559 3.9e-254 882.1 980 58.1
Sopen01g037250 Solanum pennellii HOM05D004001 ORTHO05D004559 4.9e-249 865.1 985 57.4
Cc02_g36540 Coffea canephora HOM05D004001 ORTHO05D004559 8.4e-249 864.4 976 58.6
Oeu037907.1 Olea europaea HOM05D004001 ORTHO05D004559 4.2e-248 862.1 1000 56.1
Nitab4.5_0004320g0020 Nicotiana tabacum HOM05D004001 ORTHO05D004559 2.1e-247 859.8 999 56.5
PGSC0003DMG400012752 Solanum tuberosum HOM05D004001 ORTHO05D004559 4.6e-247 858.6 1000 56.8
SGA_v2.0_scaffold95G28893 Striga asiatica HOM05D004001 ORTHO05D004559 5.6e-245 851.7 966 57.8
CAN.G170.4 Capsicum annuum HOM05D004001 ORTHO05D004559 1.9e-237 826.6 978 55.5
TAR629G2254 Trochodendron aralioides HOM05D004001 ORTHO05D004559 2.5e-237 826.2 968 54.3
Atru.chr5.325 Acer truncatum HOM05D004001 ORTHO05D004559 3.2e-232 809.3 896 54.6
Thecc.01G374400 Theobroma cacao HOM05D004001 ORTHO05D004559 2.1e-228 796.6 972 52.6
CiPaw.01G260600 Carya illinoinensis HOM05D004001 ORTHO05D004559 2.8e-228 796.2 914 53.6
Rhsim07G0025900 Rhododendron simsii HOM05D004001 ORTHO05D004559 9.3e-224 781.2 857 57.2
QL08p051978 Quercus lobata HOM05D004001 ORTHO05D004559 1.6e-223 780.4 964 54.6
CANSAT56G0321 Cannabis sativa HOM05D004001 ORTHO05D004559 1.8e-222 776.9 933 52.5
Duzib138G1007 Durio zibethinus HOM05D004001 ORTHO05D004559 3.9e-222 775.8 973 54.0
Rhsim07G0026000 Rhododendron simsii HOM05D004001 ORTHO05D004559 1.3e-220 770.8 944 53.1
Peaxi162Scf00021g01316 Petunia axillaris HOM05D004001 ORTHO05D004559 1.5e-218 763.8 966 53.5
Lj9C572T3 Lonicera japonica HOM05D004001 ORTHO05D004559 1.4e-216 757.3 976 53.1
Haze_16831 Corylus avellana HOM05D004001 ORTHO05D004559 3.5e-215 752.7 963 50.7
TAR636G3381 Trochodendron aralioides HOM05D004001 ORTHO05D004559 1.0e-214 751.1 977 51.6
Potri.014G071400 Populus trichocarpa HOM05D004001 ORTHO05D004559 7.4e-213 745.0 965 50.9
Glyma.18G221900 Glycine max HOM05D004001 ORTHO05D004559 1.1e-211 741.1 912 53.1
SGA_v2.0_scaffold153G37027 Striga asiatica HOM05D004001 ORTHO05D001724 3.1e-211 739.6 977 52.4
Gorai.007G092200 Gossypium raimondii HOM05D004001 ORTHO05D004559 6.9e-211 738.4 979 50.8
MD02G1201400 Malus domestica HOM05D004001 ORTHO05D004559 9.0e-211 738.0 894 53.8
TWI14G1161 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 4.5e-210 735.7 973 49.2
arahy.Tifrunner.gnm1.ann1.0Y1PWL Arachis hypogaea HOM05D004001 ORTHO05D004559 1.3e-209 734.2 924 51.3
Eucgr.E01409 Eucalyptus grandis HOM05D004001 ORTHO05D004559 3.2e-208 729.6 879 52.1
Cfa001702 Carpinus fangiana HOM05D004001 ORTHO05D004559 9.4e-208 728.0 966 50.4
Manes.05G044000 Manihot esculenta HOM05D004001 ORTHO05D004559 9.4e-208 728.0 888 51.5
Gohir.D11G086300 Gossypium hirsutum HOM05D004001 ORTHO05D004559 4.6e-207 725.7 978 49.5
unitig_8.g3817 Utricularia gibba HOM05D004001 ORTHO05D004559 4.6e-207 725.7 931 51.8
FAN06G2206 Fragaria x ananassa HOM05D004001 ORTHO05D004559 1.1e-205 721.1 920 51.2
FAN10G1409 Fragaria x ananassa HOM05D004001 ORTHO05D004559 1.1e-205 721.1 920 51.2
FvH4_7g12090 Fragaria vesca HOM05D004001 ORTHO05D004559 5.7e-205 718.8 920 51.1
Lalb_Chr12g0208391 Lupinus albus HOM05D004001 ORTHO05D004559 1.7e-204 717.2 927 52.4
Lalb_Chr12g0208441 Lupinus albus HOM05D004001 ORTHO05D004559 1.7e-204 717.2 927 52.4
FAN10G1690 Fragaria x ananassa HOM05D004001 ORTHO05D004559 3.7e-204 716.1 896 51.8
FAN06G4715 Fragaria x ananassa HOM05D004001 ORTHO05D004559 4.8e-204 715.7 920 50.9
Lalb_Chr07g0189651 Lupinus albus HOM05D004001 ORTHO05D004559 6.3e-204 715.3 908 51.3
RcHm_v2.0_Chr1g0350831 Rosa chinensis HOM05D004001 ORTHO05D004559 2.4e-203 713.4 921 54.2
Sc26g0001190 Simmondsia chinensis HOM05D004001 ORTHO05D004559 4.1e-203 712.6 952 51.1
arahy.Tifrunner.gnm1.ann1.2UV9R4 Arachis hypogaea HOM05D004001 ORTHO05D004559 2.9e-201 706.4 945 50.3
HanXRQChr03g0093811 Helianthus annuus HOM05D004001 ORTHO05D004559 2.9e-201 706.4 910 51.3
Sabra14G0050700 Salix brachista HOM05D004001 ORTHO05D004559 3.0e-198 696.4 961 49.1
Gorai.008G114700 Gossypium raimondii HOM05D004001 ORTHO05D004559 5.1e-198 695.7 963 48.2
FAN03G0266 Fragaria x ananassa HOM05D004001 ORTHO05D004559 2.6e-197 693.3 898 52.1
CsaV3_3G009550 Cucumis sativus L. HOM05D004001 ORTHO05D004559 3.3e-197 693.0 987 47.8
Lj7C526G13 Lonicera japonica HOM05D004001 ORTHO05D004559 1.7e-196 690.6 972 47.5
Lj1g0027935 Lotus japonicus HOM05D004001 ORTHO05D004559 2.8e-196 689.9 934 49.8
arahy.Tifrunner.gnm1.ann1.EYC1DY Arachis hypogaea HOM05D004001 ORTHO05D004559 3.7e-196 689.5 920 49.9
vmacro13388 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 1.4e-195 687.6 787 55.8
arahy.Tifrunner.gnm1.ann1.CI1NNE Arachis hypogaea HOM05D004001 ORTHO05D004559 1.8e-195 687.2 928 50.1
GSVIVG01027630001 Vitis vinifera HOM05D004001 ORTHO05D004559 3.1e-195 686.4 954 48.1
arahy.Tifrunner.gnm1.ann1.9J1L2I Arachis hypogaea HOM05D004001 ORTHO05D004559 4.1e-195 686.0 952 49.3
Nn4g26437 Nelumbo nucifera HOM05D004001 ORTHO05D004559 1.2e-194 684.5 979 47.0
arahy.Tifrunner.gnm1.ann1.H5PXMS Arachis hypogaea HOM05D004001 ORTHO05D004559 1.3e-193 681.0 952 48.8
Ciclev10018784m.g Citrus clementina HOM05D004001 ORTHO05D004559 1.3e-193 681.0 929 47.8
Glyma.09G268000 Glycine max HOM05D004001 ORTHO05D004559 3.8e-193 679.5 904 49.3
PSO478G3708 Papaver somniferum HOM05D004001 ORTHO05D004559 5.0e-193 679.1 929 47.8
COL.COLO4_12572 Corchorus olitorius HOM05D004001 ORTHO05D004559 1.9e-192 677.2 842 52.7
AUR62013619 Chenopodium quinoa HOM05D004001 ORTHO05D004559 1.5e-189 667.5 914 48.9
Ca_07831_v3 Cicer arietinum L. HOM05D004001 ORTHO05D004559 1.3e-188 664.5 933 48.1
EL10Ac1g00911 Beta vulgaris HOM05D004001 ORTHO05D004559 1.8e-187 660.6 931 48.0
Gohir.D12G105400 Gossypium hirsutum HOM05D004001 ORTHO05D004559 2.4e-187 660.2 930 48.2
ClCG05G002120 Citrullus lanatus HOM05D004001 ORTHO05D004559 3.1e-187 659.8 1086 45.0
Aqoxy7G00586 Aquilegia oxysepala HOM05D004001 ORTHO05D004559 5.9e-186 655.6 933 47.3
Prupe.2G147400 Prunus persica HOM05D004001 ORTHO05D004559 5.9e-186 655.6 840 53.0
Phvul.008G075200 Phaseolus vulgaris HOM05D004001 ORTHO05D004559 1.3e-185 654.4 923 48.3
Hund17008 Selenicereus undatus HOM05D004001 ORTHO05D004559 1.7e-185 654.1 1045 45.0
Medtr7g075140 Medicago truncatula HOM05D004001 ORTHO05D004559 2.7e-183 646.7 944 47.7
PSO782G3046 Papaver somniferum HOM05D004001 ORTHO05D004559 2.8e-180 636.7 931 46.0
AUR62004229 Chenopodium quinoa HOM05D004001 ORTHO05D004559 1.4e-179 634.4 951 46.4
Psat3g115320 Pisum sativum HOM05D004001 ORTHO05D004559 1.8e-179 634.0 932 47.2
ECA240G2591 Erigeron canadensis HOM05D004001 ORTHO05D004559 2.5e-176 623.6 906 47.9
Lsat_1_v5_gn_3_133301 Lactuca sativa HOM05D004001 ORTHO05D004559 2.8e-172 610.1 948 46.0
Gohir.A12G102200 Gossypium hirsutum HOM05D004001 ORTHO05D004559 1.2e-170 604.7 973 43.9
arahy.Tifrunner.gnm1.ann1.JKPH3R Arachis hypogaea HOM05D004001 ORTHO05D004559 2.0e-170 604.0 864 47.5
PGR042G2753 Punica granatum HOM05D004001 ORTHO05D004559 3.6e-167 593.2 888 49.0
BcaB02g08998 Brassica carinata HOM05D004001 ORTHO05D004559 2.3e-161 573.9 933 44.8
CDE04G0282 Ceratophyllum demersum HOM05D004001 ORTHO05D004559 9.5e-160 568.5 826 46.0
AL4G44630 Arabidopsis lyrata HOM05D004001 ORTHO05D004559 2.8e-159 567.0 934 43.4
Sed0014964 Sechium edule HOM05D004001 ORTHO05D004559 5.8e-157 559.3 825 47.5
CSS0038978 Camellia sinensis var. sinensis HOM05D004001 ORTHO05D004559 1.4e-155 554.7 482 65.6
AT2G45460 Arabidopsis thaliana HOM05D004001 ORTHO05D004559 1.9e-155 554.3 932 42.9
MELO3C006177.2 Cucumis melo HOM05D004001 ORTHO05D004559 2.7e-154 550.4 940 45.0
CARHR140650 Cardamine hirsuta HOM05D004001 ORTHO05D004559 5.6e-152 542.7 930 42.4
Sp4g27490 Schrenkiella parvula HOM05D004001 ORTHO05D004559 1.1e-150 538.5 961 42.5
BolC4t22266H Brassica oleracea HOM05D004001 ORTHO05D004559 2.6e-149 533.9 921 42.3
BraA05t19519Z Brassica rapa HOM05D004001 ORTHO05D004559 1.1e-147 528.5 943 41.3
C04p06430 Brassica napus HOM05D004001 ORTHO05D004559 3.2e-147 526.9 908 42.8
BcaC02g12205 Brassica carinata HOM05D004001 ORTHO05D004559 4.6e-146 523.1 907 42.8
Carub.0004s2807 Capsella rubella HOM05D004001 ORTHO05D004559 1.3e-145 521.5 970 40.7
A05p05490 Brassica napus HOM05D004001 ORTHO05D004559 6.6e-145 519.2 929 41.9
Aa31LG1G26960 Aethionema arabicum HOM05D004001 ORTHO05D004559 1.2e-143 515.0 935 41.0
Thhalv10001303m.g Eutrema salsugineum HOM05D004001 ORTHO05D004559 2.3e-142 510.8 950 40.6
MBI11_g23939_MAGBIO Magnolia biondii HOM05D004001 ORTHO05D004559 1.6e-138 498.0 762 48.0
Os03g0127600 Oryza sativa ssp. japonica HOM05D004001 ORTHO05D004559 2.7e-138 497.3 937 41.0
Zm00001eb403560 Zea mays HOM05D004001 ORTHO05D004559 6.8e-134 482.6 904 40.0
Ah.16g103740 Amaranthus hybridus HOM05D004001 ORTHO05D004559 8.4e-132 475.7 942 39.8
TPR.G26922 Trifolium pratense HOM05D004001 ORTHO05D004559 1.3e-127 461.8 879 39.8
Gohir.A11G081700 Gossypium hirsutum HOM05D004001 ORTHO05D004559 3.6e-127 460.3 979 39.5
SHI13515 Sapria himalayana HOM05D004001 ORTHO05D004559 8.1e-127 459.1 538 53.0
ATR0757G164 Amborella trichopoda HOM05D004001 ORTHO05D004559 2.0e-125 454.5 899 41.0
unitig_31.g34038 Utricularia gibba HOM05D004001 ORTHO05D004559 2.3e-121 441.0 584 50.7
Zm00001eb002020 Zea mays HOM05D004001 ORTHO05D004559 6.7e-113 412.9 861 37.7
SEGI_05063 Sequoiadendron giganteum HOM05D004001 ORTHO05D004559 1.9e-99 368.2 898 36.2
SalBow3G1117 Salvia bowleyana HOM05D004001 ORTHO05D004559 1.6e-95 355.1 244 75.8
DCAR_006877 Daucus carota HOM05D004001 ORTHO05D004559 4.8e-95 353.6 471 46.3
HPP92_018394 Vanilla planifolia HOM05D004001 ORTHO05D004559 6.9e-94 349.7 708 39.7
DCAR_006876 Daucus carota HOM05D004001 ORTHO05D004559 3.4e-85 320.9 464 48.1
CSS0022656 Camellia sinensis var. sinensis HOM05D004001 ORTHO05D004559 2.2e-84 318.2 484 46.3
arahy.Tifrunner.gnm1.ann1.RB3Z54 Arachis hypogaea HOM05D004001 ORTHO05D004559 7.2e-83 313.2 417 50.8
AagrBONN_evm.TU.Sc2ySwM_362.1643 Anthoceros agrestis HOM05D004001 ORTHO05D004559 9.4e-83 312.8 578 40.0
arahy.Tifrunner.gnm1.ann1.5M5P73 Arachis hypogaea HOM05D004001 ORTHO05D004559 2.0e-80 305.1 397 49.6
Oeu005774.1 Olea europaea HOM05D004001 ORTHO05D004559 2.1e-66 258.5 214 70.1
VMungo1383G1498 Vigna mungo HOM05D004001 ORTHO05D004559 1.3e-63 249.2 434 44.0
Mapoly0005s0201 Marchantia polymorpha HOM05D004001 ORTHO05D004559 6.1e-58 230.3 922 30.3
Actinidia33460 Actinidia chinensis HOM05D004001 ORTHO05D004559 5.9e-53 213.8 181 61.3
vmacro13387 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 2.0e-45 188.7 157 62.4
SEGI_21780 Sequoiadendron giganteum HOM05D004001 ORTHO05D004559 1.2e-40 172.9 635 32.6
Pp3c5_28010 Physcomitrium patens HOM05D004001 ORTHO05D004559 7.0e-38 163.7 1012 26.3
VMungo1383G3044 Vigna mungo HOM05D004001 ORTHO05D004559 1.6e-37 162.5 165 53.3
arahy.Tifrunner.gnm1.ann1.K6PBMX Arachis hypogaea HOM05D004001 ORTHO05D004559 2.3e-36 158.7 158 58.9
Mapoly0048s0074 Marchantia polymorpha HOM05D004001 ORTHO05D004559 2.6e-32 145.2 235 37.9
CBR_g40168 Chara braunii HOM05D004001 ORTHO05D004559 4.4e-32 144.4 621 26.4
arahy.Tifrunner.gnm1.ann1.Q8AXKZ Arachis hypogaea HOM05D005562 ORTHO05D007785 2.2e-31 142.1 164 56.1
Cpa.g.sc18.133 Carica papaya HOM05D004001 ORTHO05D004559 3.2e-30 138.3 290 40.7
arahy.Tifrunner.gnm1.ann1.LXQN6Z Arachis hypogaea HOM05D004001 ORTHO05D004559 9.2e-30 136.7 313 37.7
arahy.Tifrunner.gnm1.ann1.DK59KL Arachis hypogaea HOM05D004001 ORTHO05D004559 1.6e-29 136.0 151 53.6
Hma1.2p1_1793F.1_g302640 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 2.8e-26 125.2 158 50.6
Hma1.2p1_1793F.1_g302630 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 3.6e-26 124.8 98 63.3
Hma1.2p1_3528F.1_g336625 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 3.6e-26 124.8 98 63.3
arahy.Tifrunner.gnm1.ann1.7YWS89 Arachis hypogaea HOM05D004001 ORTHO05D004559 1.7e-23 115.9 378 35.2
Rhsim07G0026800 Rhododendron simsii HOM05D004001 ORTHO05D004559 1.4e-22 112.8 296 36.8
arahy.Tifrunner.gnm1.ann1.FJEF2G Arachis hypogaea HOM05D004001 ORTHO05D004559 2.7e-21 108.6 203 46.3
arahy.Tifrunner.gnm1.ann1.2V3ERI Arachis hypogaea HOM05D004001 ORTHO05D004559 1.1e-17 96.7 253 39.9
Oeu005773.1 Olea europaea HOM05D004001 ORTHO05D004559 1.2e-16 93.2 107 54.2
arahy.Tifrunner.gnm1.ann1.63QVJR Arachis hypogaea HOM05D004001 ORTHO05D004559 3.4e-16 91.7 246 39.0
EL10Ac2g04735 Beta vulgaris HOM05D002948 ORTHO05D003577 4.4e-16 91.3 119 48.7
vmacro22718 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 7.8e-13 80.5 65 66.2
TWI56G0444 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 1.4e-09 69.7 155 31.6
Dinv00152 Davidia involucrata HOM05D026811 ORTHO05D004559 3.1e-09 68.6 56 64.3
TWI56G0921 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 3.1e-09 68.6 134 35.1
TWI56G1317 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 3.1e-09 68.6 134 35.1
arahy.Tifrunner.gnm1.ann1.8X1DD2 Arachis hypogaea HOM05D004001 ORTHO05D004559 4.0e-09 68.2 96 44.8
Dinv00153 Davidia involucrata HOM05D004001 ORTHO05D004559 5.3e-09 67.8 67 58.2
TWI56G0254 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 1.2e-08 66.6 127 34.6
TWI56G1263 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 1.2e-08 66.6 127 34.6
TWI56G1146 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 1.5e-08 66.2 168 30.4
Psat6g122920 Pisum sativum HOM05D004001 ORTHO05D004559 2.0e-08 65.9 47 66.0
Dinv00151 Davidia involucrata HOM05D026811 ORTHO05D004559 5.8e-08 64.3 52 63.5
unitig_11.g32402 Utricularia gibba HOM05D052051 ORTHO05D004559 7.6e-08 63.9 47 63.8
unitig_8.g3821 Utricularia gibba HOM05D052051 ORTHO05D004559 7.6e-08 63.9 47 63.8
arahy.Tifrunner.gnm1.ann1.GD98VG Arachis hypogaea HOM05D004001 ORTHO05D004559 3.8e-07 61.6 59 62.7
unitig_31.g34039 Utricularia gibba HOM05D004001 ORTHO05D004559 3.8e-07 61.6 81 55.6
arahy.Tifrunner.gnm1.ann1.YQ72RL Arachis hypogaea HOM05D004001 ORTHO05D004559 4.9e-07 61.2 177 30.5
arahy.Tifrunner.gnm1.ann1.73J9IG Arachis hypogaea HOM05D004001 ORTHO05D004559 6.4e-07 60.8 101 46.5
arahy.Tifrunner.gnm1.ann1.8SNI53 Arachis hypogaea HOM05D004001 ORTHO05D004559 8.4e-07 60.5 36 83.3


User provided reference genes

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