Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.20688 Avicennia marina HOM05D006946 ORTHO05D008634 3.0e-193 678.3 341 100.0
Migut.B01532 Erythranthe guttata HOM05D006946 ORTHO05D008634 7.6e-128 461.1 349 69.1
SalBow5G3575 Salvia bowleyana HOM05D006946 ORTHO05D008634 3.5e-117 425.6 359 65.5
SGA_v2.0_scaffold340G49324 Striga asiatica HOM05D006946 ORTHO05D008634 3.0e-116 422.5 372 61.3
CSS0010598 Camellia sinensis var. sinensis HOM05D006946 ORTHO05D008634 2.2e-111 406.4 348 62.6
Actinidia32506 Actinidia chinensis HOM05D006946 ORTHO05D008634 3.9e-108 395.6 340 60.0
vmacro13499 Vaccinium macrocarpon HOM05D006946 ORTHO05D008634 6.6e-108 394.8 350 59.1
Rhsim07G0036200 Rhododendron simsii HOM05D006946 ORTHO05D008634 5.3e-105 385.2 352 58.5
Ciclev10020918m.g Citrus clementina HOM05D006946 ORTHO05D008634 9.0e-105 384.4 352 58.5
GSVIVG01018284001 Vitis vinifera HOM05D006946 ORTHO05D008634 3.8e-103 379.0 349 58.2
Thecc.01G395400 Theobroma cacao HOM05D006946 ORTHO05D008634 6.4e-103 378.3 343 58.0
Atru.chr5.122 Acer truncatum HOM05D006946 ORTHO05D008634 1.3e-100 370.5 357 55.7
Cc02_g25140 Coffea canephora HOM05D006946 ORTHO05D008634 3.3e-99 365.9 353 57.5
Nitab4.5_0007027g0020 Nicotiana tabacum HOM05D006946 ORTHO05D008634 4.3e-99 365.5 341 57.5
vmacro13524 Vaccinium macrocarpon HOM05D006946 ORTHO05D008634 4.3e-99 365.5 410 50.2
TAR629G0179 Trochodendron aralioides HOM05D006946 ORTHO05D008634 9.6e-99 364.4 352 56.2
Duzib133G0968 Durio zibethinus HOM05D006946 ORTHO05D008634 1.1e-97 360.9 345 55.7
HanXRQChr13g0423251 Helianthus annuus HOM05D006946 ORTHO05D008634 2.0e-96 356.7 327 58.4
Hma1.2p1_0072F.1_g038310 Hydrangea macrophylla HOM05D006946 ORTHO05D008634 2.0e-96 356.7 356 54.8
Potri.002G138000 Populus trichocarpa HOM05D006946 ORTHO05D008634 2.6e-96 356.3 350 55.1
CAN.G1473.5 Capsicum annuum HOM05D006946 ORTHO05D008634 3.4e-96 355.9 322 59.9
PGSC0003DMG400025996 Solanum tuberosum HOM05D006946 ORTHO05D008634 3.4e-96 355.9 332 58.1
Haze_02851 Corylus avellana HOM05D006946 ORTHO05D008634 1.0e-95 354.4 337 57.9
PGR042G0965 Punica granatum HOM05D006946 ORTHO05D008634 2.9e-95 352.8 356 53.1
Phvul.010G049700 Phaseolus vulgaris HOM05D006946 ORTHO05D008634 6.5e-95 351.7 357 52.7
Solyc01g090220.4 Solanum lycopersicum HOM05D006946 ORTHO05D008634 5.5e-94 348.6 329 58.1
VMungo0331G1797 Vigna mungo HOM05D006946 ORTHO05D008634 5.5e-94 348.6 357 51.5
QL04p030124 Quercus lobata HOM05D006946 ORTHO05D008634 9.3e-94 347.8 351 54.1
Sopen01g036020 Solanum pennellii HOM05D006946 ORTHO05D008634 1.2e-93 347.4 353 55.5
Lsat_1_v5_gn_3_126900 Lactuca sativa HOM05D006946 ORTHO05D008634 4.6e-93 345.5 343 56.3
Aqoxy1G01627 Aquilegia oxysepala HOM05D006946 ORTHO05D008634 1.0e-92 344.4 349 51.0
Cfa011066 Carpinus fangiana HOM05D006946 ORTHO05D008634 1.3e-92 344.0 342 57.0
COL.COLO4_12403 Corchorus olitorius HOM05D006946 ORTHO05D008634 1.3e-92 344.0 348 54.0
Aqoxy5G04137 Aquilegia oxysepala HOM05D006946 ORTHO05D008634 1.8e-92 343.6 352 51.4
Glyma.03G110700 Glycine max HOM05D006946 ORTHO05D008634 3.9e-92 342.4 360 51.4
CANSAT25G1232 Cannabis sativa HOM05D006946 ORTHO05D008634 1.1e-91 340.9 346 53.2
arahy.Tifrunner.gnm1.ann1.GB8G30 Arachis hypogaea HOM05D006946 ORTHO05D008634 4.3e-91 339.0 354 50.3
TPR.G33124 Trifolium pratense HOM05D006946 ORTHO05D008634 5.7e-91 338.6 363 51.5
THA.LOC104817188 Tarenaya hassleriana HOM05D006946 ORTHO05D008634 7.4e-91 338.2 343 52.5
FAN06G0853 Fragaria x ananassa HOM05D006946 ORTHO05D008634 1.6e-90 337.0 350 51.4
ECA240G0199 Erigeron canadensis HOM05D006946 ORTHO05D008634 2.1e-90 336.7 285 61.4
arahy.Tifrunner.gnm1.ann1.4A1F8H Arachis hypogaea HOM05D006946 ORTHO05D008634 6.3e-90 335.1 354 49.7
Gorai.008G109100 Gossypium raimondii HOM05D006946 ORTHO05D008634 6.3e-90 335.1 342 53.8
FAN06G0591 Fragaria x ananassa HOM05D006946 ORTHO05D008634 1.4e-89 334.0 350 51.4
FvH4_7g10220 Fragaria vesca HOM05D006946 ORTHO05D008634 1.8e-89 333.6 350 50.9
FAN10G0617 Fragaria x ananassa HOM05D006946 ORTHO05D008634 3.1e-89 332.8 349 51.0
FAN10G1802 Fragaria x ananassa HOM05D006946 ORTHO05D008634 3.1e-89 332.8 349 51.0
FAN03G2893 Fragaria x ananassa HOM05D006946 ORTHO05D008634 9.0e-89 331.3 350 51.1
Nn1g00836 Nelumbo nucifera HOM05D006946 ORTHO05D008634 1.2e-88 330.9 351 54.1
Gohir.D12G100200 Gossypium hirsutum HOM05D006946 ORTHO05D008634 2.6e-88 329.7 338 53.6
TWI14G0580 Tripterygium wilfordii HOM05D006946 ORTHO05D008634 2.6e-88 329.7 316 55.7
Medtr8g006950 Medicago truncatula HOM05D006946 ORTHO05D008634 3.4e-88 329.3 358 49.7
Lj3g0014310 Lotus japonicus HOM05D006946 ORTHO05D008634 4.5e-88 328.9 333 51.1
CARHR170620 Cardamine hirsuta HOM05D006946 ORTHO05D008634 2.9e-87 326.2 279 58.4
RcHm_v2.0_Chr1g0347961 Rosa chinensis HOM05D006946 ORTHO05D008634 4.2e-86 322.4 348 50.9
Ca_25802_v3 Cicer arietinum L. HOM05D006946 ORTHO05D008634 7.2e-86 321.6 356 48.9
PSO675G1257 Papaver somniferum HOM05D006946 ORTHO05D008634 1.6e-85 320.5 352 49.4
Sp5g02920 Schrenkiella parvula HOM05D006946 ORTHO05D008634 1.6e-85 320.5 351 49.0
Carub.0005s2704 Capsella rubella HOM05D006946 ORTHO05D008634 2.1e-85 320.1 280 57.1
Eucgr.E01546 Eucalyptus grandis HOM05D006946 ORTHO05D008634 2.3e-84 316.6 364 49.5
AT3G60300 Arabidopsis thaliana HOM05D006946 ORTHO05D008634 8.7e-84 314.7 283 56.5
PSO717G0092 Papaver somniferum HOM05D006946 ORTHO05D008634 1.5e-83 313.9 352 48.9
Aa31LG10G14420 Aethionema arabicum HOM05D006946 ORTHO05D008634 2.5e-83 313.2 292 56.2
Thhalv10006060m.g Eutrema salsugineum HOM05D006946 ORTHO05D008634 3.3e-83 312.8 282 55.7
unitig_750.g28410 Utricularia gibba HOM05D006946 ORTHO05D008634 3.3e-83 312.8 358 54.2
Sabra02G0106500 Salix brachista HOM05D006946 ORTHO05D008634 1.8e-81 307.0 428 44.9
Lalb_Chr07g0195411 Lupinus albus HOM05D006946 ORTHO05D008634 4.1e-81 305.8 355 48.5
EL10Ac1g00757 Beta vulgaris HOM05D006946 ORTHO05D008634 9.0e-81 304.7 322 53.1
Psat4g224200 Pisum sativum HOM05D006946 ORTHO05D008634 1.1e-78 297.7 350 47.7
Gohir.A12G097300 Gossypium hirsutum HOM05D006946 ORTHO05D008634 7.2e-78 295.0 250 59.2
A04p01710 Brassica napus HOM05D006946 ORTHO05D008634 2.7e-77 293.1 276 53.6
Nitab4.5_0000920g0010 Nicotiana tabacum HOM05D006946 ORTHO05D008634 6.1e-77 292.0 359 48.5
Sc02g0003120 Simmondsia chinensis HOM05D006946 ORTHO05D008634 6.1e-77 292.0 362 45.9
Ah.05g177890 Amaranthus hybridus HOM05D006946 ORTHO05D008634 1.4e-76 290.8 289 55.4
HPP92_022105 Vanilla planifolia HOM05D006946 ORTHO05D008634 8.8e-76 288.1 334 49.4
C04p32350 Brassica napus HOM05D006946 ORTHO05D008634 1.5e-75 287.3 350 45.7
AL5G42520 Arabidopsis lyrata HOM05D006946 ORTHO05D008634 2.2e-74 283.5 362 44.8
HPP92_022132 Vanilla planifolia HOM05D006946 ORTHO05D008634 6.3e-74 282.0 348 47.1
BraA04t15895Z Brassica rapa HOM05D006946 ORTHO05D008634 2.0e-72 276.9 294 49.3
ATR0057G021 Amborella trichopoda HOM05D006946 ORTHO05D008634 5.9e-72 275.4 345 45.5
AUR62023403 Chenopodium quinoa HOM05D006946 ORTHO05D008634 1.7e-71 273.9 324 49.4
Peaxi162Scf00475g00422 Petunia axillaris HOM05D000253 ORTHO05D000149 1.7e-71 273.9 414 43.0
BolC4t24784H Brassica oleracea HOM05D006946 ORTHO05D008634 5.0e-71 272.3 374 43.9
Zm00001eb200010 Zea mays HOM05D006946 ORTHO05D008634 1.1e-70 271.2 355 45.6
CiPaw.14G020200 Carya illinoinensis HOM05D006946 ORTHO05D008634 1.1e-65 254.6 199 61.8
Actinidia18349 Actinidia chinensis HOM05D006946 ORTHO05D008634 4.5e-64 249.2 242 55.8
Dinv43613 Davidia involucrata HOM05D006946 ORTHO05D008634 2.2e-63 246.9 240 55.8
Manes.05G055200 Manihot esculenta HOM05D006946 ORTHO05D008634 2.5e-62 243.4 251 55.8
AUR62013748 Chenopodium quinoa HOM05D006946 ORTHO05D008634 1.8e-60 237.3 324 45.1
Lj9A556T13 Lonicera japonica HOM05D006946 ORTHO05D008634 2.6e-59 233.4 258 54.7
Hund27407 Selenicereus undatus HOM05D006946 ORTHO05D008634 1.7e-58 230.7 482 34.2
Mapoly0040s0025 Marchantia polymorpha HOM05D006946 ORTHO05D008634 1.2e-48 198.0 311 37.9
Prupe.2G132200 Prunus persica HOM05D006946 ORTHO05D008634 2.7e-48 196.8 258 43.4
Medtr5g027110 Medicago truncatula HOM05D006946 ORTHO05D008634 3.5e-48 196.4 249 45.8
Hma1.2p1_0072F.1_g038320 Hydrangea macrophylla HOM05D006946 ORTHO05D008634 7.7e-48 195.3 161 62.1
AagrBONN_evm.TU.Sc2ySwM_117.2461 Anthoceros agrestis HOM05D006946 ORTHO05D008634 5.9e-40 169.1 298 35.6
PSO017G5203 Papaver somniferum HOM05D006946 ORTHO05D008634 9.5e-38 161.8 175 47.4
Potri.014G048000 Populus trichocarpa HOM05D006946 ORTHO05D008634 1.6e-37 161.0 235 41.3
SMO352G0084 Selaginella moellendorffii HOM05D006946 ORTHO05D008634 3.4e-35 153.3 163 46.6
Cpa.g.sc22.64 Carica papaya HOM05D006946 ORTHO05D008634 3.0e-31 140.2 103 67.0
CBR_g38735 Chara braunii HOM05D000019 ORTHO05D000353 2.4e-25 120.6 338 27.8
Cpa.g.sc22.65 Carica papaya HOM05D006946 ORTHO05D008634 4.0e-20 103.2 222 32.9
Psat1g142640 Pisum sativum HOM05D006946 ORTHO05D008634 2.6e-19 100.5 105 51.4
Psat2g026240 Pisum sativum HOM05D006946 ORTHO05D008634 2.1e-16 90.9 117 43.6
MCO13G420 Micromonas commoda HOM05D006946 ORTHO05D008634 4.6e-16 89.7 168 31.5
Psat1g142600 Pisum sativum HOM05D006946 ORTHO05D008634 1.7e-15 87.8 116 45.7
AUR62044571 Chenopodium quinoa HOM05D006946 ORTHO05D008634 5.1e-15 86.3 337 27.9
MD02G1213400 Malus domestica HOM05D006946 ORTHO05D008634 3.1e-12 77.0 111 40.5
Hma1.2p1_0072F.1_g038330 Hydrangea macrophylla HOM05D006946 ORTHO05D008634 8.9e-12 75.5 46 69.6
Cre13.g581801 Chlamydomonas reinhardtii HOM05D006946 ORTHO05D008634 1.7e-10 71.2 233 24.5
Psat5g300840 Pisum sativum HOM05D006946 ORTHO05D008634 1.7e-10 71.2 60 51.7
QL04p089514 Quercus lobata HOM05D006946 ORTHO05D008634 8.4e-10 68.9 37 81.1
Os11g0565400 Oryza sativa ssp. japonica HOM05D006946 ORTHO05D008634 3.5e-08 63.5 45 68.9
SEGI_22555 Sequoiadendron giganteum HOM05D006946 ORTHO05D000002 1.3e-07 61.6 152 33.6
HPP92_022101 Vanilla planifolia HOM05D006946 ORTHO05D008634 1.3e-07 61.6 46 63.0
Psat6g138360 Pisum sativum HOM05D000346 ORTHO05D008634 3.9e-07 60.1 95 40.0
Sabra07G0104700 Salix brachista HOM05D003486 ORTHO05D004600 5.1e-07 59.7 114 30.7
Potri.007G128300 Populus trichocarpa HOM05D003486 ORTHO05D004600 1.1e-06 58.5 116 31.9
SGA_v2.0_scaffold19G08736 Striga asiatica HOM05D002451 ORTHO05D007901 1.1e-06 58.5 34 73.5
Duzib151G0706 Durio zibethinus HOM05D003486 ORTHO05D004600 1.5e-06 58.2 116 32.8
PRCOL_00003801 Prasinoderma coloniale HOM05D013257 ORTHO05D015313 2.5e-06 57.4 230 23.0
Rhsim02G0076900 Rhododendron simsii HOM05D003486 ORTHO05D004600 2.5e-06 57.4 114 31.6
FvH4_4g10800 Fragaria vesca HOM05D003486 ORTHO05D004600 3.3e-06 57.0 109 31.2
Ciclev10019579m.g Citrus clementina HOM05D003486 ORTHO05D004600 4.3e-06 56.6 109 33.0
FAN07G1795 Fragaria x ananassa HOM05D003486 ORTHO05D004600 4.3e-06 56.6 109 31.2
Hma1.2p1_0847F.1_g227860 Hydrangea macrophylla HOM05D003486 ORTHO05D004600 4.3e-06 56.6 109 30.3
Sopen11g020460 Solanum pennellii HOM05D003486 ORTHO05D004600 4.3e-06 56.6 118 30.5
MD04G1040400 Malus domestica HOM05D003486 ORTHO05D004600 5.6e-06 56.2 122 31.1
Manes.11G120800 Manihot esculenta HOM05D003486 ORTHO05D004600 5.6e-06 56.2 116 30.2
VMungo1127G0960 Vigna mungo HOM05D003486 ORTHO05D004600 5.6e-06 56.2 311 24.8
Prupe.1G194100 Prunus persica HOM05D003486 ORTHO05D004600 9.6e-06 55.5 122 32.0


User provided reference genes

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