Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.20684 Avicennia marina HOM05D006344 ORTHO05D007744 3.6e-299 1030.8 514 100.0
SalBow8G3479 Salvia bowleyana HOM05D006344 ORTHO05D007744 1.4e-218 763.1 541 71.7
Migut.B01523 Erythranthe guttata HOM05D006344 ORTHO05D007744 2.0e-209 732.6 517 71.4
SGA_v2.0_scaffold52G19234 Striga asiatica HOM05D006344 ORTHO05D007744 3.4e-204 715.3 517 69.6
Cc02_g25170 Coffea canephora HOM05D006344 ORTHO05D007744 2.1e-198 696.0 526 68.4
Oeu011251.1 Olea europaea HOM05D006344 ORTHO05D007744 1.5e-191 673.3 552 63.4
Sopen10g011810 Solanum pennellii HOM05D006344 ORTHO05D007744 4.0e-189 665.2 521 64.5
CSS0047635 Camellia sinensis var. sinensis HOM05D006344 ORTHO05D007744 4.4e-188 661.8 527 64.9
CSS0005629 Camellia sinensis var. sinensis HOM05D006344 ORTHO05D007744 1.0e-184 650.6 551 61.9
Nn1g00813 Nelumbo nucifera HOM05D006344 ORTHO05D007744 1.1e-183 647.1 521 63.1
unitig_0.g1343 Utricularia gibba HOM05D006344 ORTHO05D007744 2.8e-182 642.5 483 67.1
Eucgr.D01222 Eucalyptus grandis HOM05D006344 ORTHO05D007744 6.4e-179 631.3 436 69.3
QL04p029920 Quercus lobata HOM05D006344 ORTHO05D007744 6.4e-179 631.3 439 69.5
Potri.002G138600 Populus trichocarpa HOM05D006344 ORTHO05D007744 1.4e-178 630.2 528 59.8
Glyma.12G152700 Glycine max HOM05D006344 ORTHO05D007744 4.1e-178 628.6 428 70.1
Cfa011061 Carpinus fangiana HOM05D006344 ORTHO05D007744 5.4e-178 628.2 457 68.5
vmacro13505 Vaccinium macrocarpon HOM05D006344 ORTHO05D007744 1.6e-177 626.7 520 64.4
Nitab4.5_0000228g0070 Nicotiana tabacum HOM05D006344 ORTHO05D007744 2.0e-177 626.3 563 59.9
arahy.Tifrunner.gnm1.ann1.6KIV37 Arachis hypogaea HOM05D006344 ORTHO05D007744 3.5e-177 625.5 431 68.7
VMungo0331G0733 Vigna mungo HOM05D006344 ORTHO05D007744 6.0e-177 624.8 457 65.2
Sc26g0001660 Simmondsia chinensis HOM05D006344 ORTHO05D007744 1.3e-176 623.6 424 72.2
arahy.Tifrunner.gnm1.ann1.7K9T15 Arachis hypogaea HOM05D006344 ORTHO05D007744 6.6e-176 621.3 460 65.2
Phvul.010G046700 Phaseolus vulgaris HOM05D006344 ORTHO05D007744 5.6e-175 618.2 458 65.3
Thecc.01G396400 Theobroma cacao HOM05D006344 ORTHO05D007744 5.6e-175 618.2 529 63.5
Haze_02860 Corylus avellana HOM05D006344 ORTHO05D007744 4.7e-174 615.1 438 69.4
Ciclev10019814m.g Citrus clementina HOM05D006344 ORTHO05D007744 6.2e-174 614.8 467 67.9
MD07G1109900 Malus domestica HOM05D006344 ORTHO05D007744 8.0e-174 614.4 445 69.2
Aqoxy3G02683 Aquilegia oxysepala HOM05D006344 ORTHO05D007744 1.1e-173 614.0 487 63.4
Prupe.2G133500 Prunus persica HOM05D006344 ORTHO05D007744 1.1e-173 614.0 447 68.7
Sabra02G0107400 Salix brachista HOM05D006344 ORTHO05D007744 1.8e-173 613.2 541 57.7
Manes.05G055800 Manihot esculenta HOM05D006344 ORTHO05D007744 3.1e-173 612.5 437 67.5
THA.LOC104802498 Tarenaya hassleriana HOM05D006344 ORTHO05D007744 7.5e-172 607.8 520 61.9
EL10Ac1g00751 Beta vulgaris HOM05D006344 ORTHO05D007744 1.7e-171 606.7 468 64.7
AUR62013752 Chenopodium quinoa HOM05D006344 ORTHO05D007744 2.9e-171 605.9 478 64.9
Dinv44052 Davidia involucrata HOM05D006344 ORTHO05D007744 3.7e-171 605.5 385 75.1
Medtr8g007155 Medicago truncatula HOM05D006344 ORTHO05D007744 6.4e-171 604.7 451 66.3
TAR375G1150 Trochodendron aralioides HOM05D006344 ORTHO05D007744 8.3e-171 604.4 525 60.4
RcHm_v2.0_Chr1g0348081 Rosa chinensis HOM05D006344 ORTHO05D007744 1.4e-170 603.6 436 68.6
Hund17097 Selenicereus undatus HOM05D006344 ORTHO05D007744 2.4e-170 602.8 473 66.0
Ca_14805_v3 Cicer arietinum L. HOM05D006344 ORTHO05D007744 5.4e-170 601.7 445 65.4
Gohir.D12G100600 Gossypium hirsutum HOM05D006344 ORTHO05D007744 9.2e-170 600.9 519 61.8
Lalb_Chr12g0210531 Lupinus albus HOM05D006344 ORTHO05D007744 9.2e-170 600.9 466 62.7
TWI23G1150 Tripterygium wilfordii HOM05D006344 ORTHO05D007744 1.6e-169 600.1 515 59.6
Glyma.06G240000 Glycine max HOM05D006344 ORTHO05D007744 2.1e-169 599.7 458 64.4
Gohir.A12G097600 Gossypium hirsutum HOM05D006344 ORTHO05D007744 2.1e-169 599.7 518 61.4
Lj3g0017960 Lotus japonicus HOM05D006344 ORTHO05D007744 2.7e-169 599.4 474 62.9
Duzib138G0679 Durio zibethinus HOM05D006344 ORTHO05D007744 4.6e-169 598.6 446 67.0
CANSAT25G2006 Cannabis sativa HOM05D006344 ORTHO05D007744 7.8e-169 597.8 499 61.9
FAN10G1159 Fragaria x ananassa HOM05D006344 ORTHO05D007744 1.3e-168 597.0 479 63.3
Gorai.008G109500 Gossypium raimondii HOM05D006344 ORTHO05D007744 1.7e-168 596.7 520 61.2
FAN06G2435 Fragaria x ananassa HOM05D006344 ORTHO05D007744 5.1e-168 595.1 436 67.7
FAN06G3766 Fragaria x ananassa HOM05D006344 ORTHO05D007744 5.1e-168 595.1 436 67.7
GSVIVG01018294001 Vitis vinifera HOM05D006344 ORTHO05D007744 5.1e-168 595.1 385 73.0
Thhalv10001417m.g Eutrema salsugineum HOM05D006344 ORTHO05D007744 6.6e-168 594.7 524 60.5
FvH4_7g10380 Fragaria vesca HOM05D006344 ORTHO05D007744 6.6e-168 594.7 436 67.7
FAN10G0415 Fragaria x ananassa HOM05D006344 ORTHO05D007744 6.6e-168 594.7 479 63.0
ECA234G3853 Erigeron canadensis HOM05D006344 ORTHO05D007744 1.5e-167 593.6 451 65.0
Duzib133G0621 Durio zibethinus HOM05D006344 ORTHO05D007744 7.3e-167 591.3 519 59.7
FAN01G1631 Fragaria x ananassa HOM05D006344 ORTHO05D007744 7.3e-167 591.3 472 63.6
TPR.G32142 Trifolium pratense HOM05D006344 ORTHO05D007744 2.8e-166 589.3 449 64.8
PSO782G2130 Papaver somniferum HOM05D006344 ORTHO05D007744 1.4e-165 587.0 515 58.4
Sp4g26830 Schrenkiella parvula HOM05D006344 ORTHO05D007744 2.3e-165 586.3 521 58.9
Rhsim07G0037100 Rhododendron simsii HOM05D006344 ORTHO05D007744 4.0e-165 585.5 493 62.3
AT2G44760 Arabidopsis thaliana HOM05D006344 ORTHO05D007744 5.2e-165 585.1 522 59.8
AUR62023399 Chenopodium quinoa HOM05D006344 ORTHO05D007744 8.9e-165 584.3 462 62.8
Lsat_1_v5_gn_4_39300 Lactuca sativa HOM05D006344 ORTHO05D007744 1.5e-164 583.6 453 64.2
MELO3C005945.2 Cucumis melo HOM05D006344 ORTHO05D007744 3.4e-164 582.4 447 64.2
AL4G43840 Arabidopsis lyrata HOM05D006344 ORTHO05D007744 5.8e-164 581.6 525 59.8
CiPaw.14G019800 Carya illinoinensis HOM05D006344 ORTHO05D007744 8.3e-163 577.8 453 64.5
Psat4g223640 Pisum sativum HOM05D006344 ORTHO05D007744 8.3e-163 577.8 478 60.5
FAN03G0097 Fragaria x ananassa HOM05D006344 ORTHO05D007744 2.1e-161 573.2 485 60.8
HanXRQChr17g0562521 Helianthus annuus HOM05D006344 ORTHO05D007744 2.1e-161 573.2 443 65.0
ATR0665G564 Amborella trichopoda HOM05D006344 ORTHO05D007744 1.0e-160 570.9 523 57.0
A05p04940 Brassica napus HOM05D006344 ORTHO05D007744 1.3e-160 570.5 448 65.0
CARHR139980 Cardamine hirsuta HOM05D006344 ORTHO05D007744 1.3e-160 570.5 462 63.9
BcaB02g08857 Brassica carinata HOM05D006344 ORTHO05D007744 8.6e-160 567.8 448 65.0
BcaC02g12272 Brassica carinata HOM05D006344 ORTHO05D007744 2.1e-158 563.1 514 57.4
C04p05760 Brassica napus HOM05D006344 ORTHO05D007744 2.1e-158 563.1 514 57.8
BolC4t22205H Brassica oleracea HOM05D006344 ORTHO05D007744 2.1e-158 563.1 514 57.4
Carub.0004s2733 Capsella rubella HOM05D006344 ORTHO05D007744 4.7e-158 562.0 520 57.7
BraA05t19467Z Brassica rapa HOM05D006344 ORTHO05D007744 6.2e-158 561.6 445 64.7
Aa31LG1G26310 Aethionema arabicum HOM05D006344 ORTHO05D007744 4.4e-156 555.4 554 55.8
COL.COLO4_12394 Corchorus olitorius HOM05D006344 ORTHO05D007744 6.4e-155 551.6 368 71.2
Os04g0545200 Oryza sativa ssp. japonica HOM05D006344 ORTHO05D007744 7.8e-153 544.7 460 60.4
HPP92_012970 Vanilla planifolia HOM05D006344 ORTHO05D007744 2.5e-151 539.7 454 59.9
Zm00001eb427880 Zea mays HOM05D006344 ORTHO05D007744 4.3e-151 538.9 450 59.1
DCAR_025059 Daucus carota HOM05D006344 ORTHO05D007744 6.2e-150 535.0 445 59.8
PGR004G1920 Punica granatum HOM05D006344 ORTHO05D007744 1.8e-149 533.5 450 64.2
ClCG05G000130 Citrullus lanatus HOM05D006344 ORTHO05D007744 6.9e-149 531.6 447 61.1
Actinidia18353 Actinidia chinensis HOM05D006344 ORTHO05D007744 3.8e-147 525.8 404 66.6
COL.COLO4_10415 Corchorus olitorius HOM05D006344 ORTHO05D007744 2.5e-143 513.1 500 55.0
Sed0012570 Sechium edule HOM05D006344 ORTHO05D007744 2.8e-142 509.6 425 60.7
CDE06G1994 Ceratophyllum demersum HOM05D006344 ORTHO05D007744 9.0e-141 504.6 445 57.3
Cpa.g.sc22.25 Carica papaya HOM05D006344 ORTHO05D007744 1.2e-140 504.2 385 66.0
CsaV3_3G007240 Cucumis sativus L. HOM05D006344 ORTHO05D007744 7.6e-140 501.5 624 45.2
Nitab4.5_0009461g0020 Nicotiana tabacum HOM05D006344 ORTHO05D007744 2.2e-123 446.8 332 66.3
Lj9C555G1 Lonicera japonica HOM05D006344 ORTHO05D007744 9.7e-119 431.4 250 80.0
Peaxi162Scf00103g00911 Petunia axillaris HOM05D006344 ORTHO05D007744 2.0e-95 354.0 192 82.3
Atru.chr5.116 Acer truncatum HOM05D006344 ORTHO05D007744 2.6e-95 353.6 239 71.5
Peaxi162Scf00103g00912 Petunia axillaris HOM05D006344 ORTHO05D007744 1.5e-90 337.8 328 57.9
Solyc10g037890.3 Solanum lycopersicum HOM05D006344 ORTHO05D007744 2.2e-86 323.9 183 82.0
PGSC0003DMG400026373 Solanum tuberosum HOM05D006344 ORTHO05D007744 1.4e-85 321.2 323 56.0
CAN.G768.2 Capsicum annuum HOM05D006344 ORTHO05D007744 2.4e-85 320.5 330 55.8
Solyc10g037900.1 Solanum lycopersicum HOM05D006344 ORTHO05D007744 8.5e-83 312.0 329 52.9
Pp3c5_3810 Physcomitrium patens HOM05D006344 ORTHO05D007744 3.1e-77 293.5 479 38.2
PGSC0003DMG400003447 Solanum tuberosum HOM05D006344 ORTHO05D007744 5.0e-75 286.2 163 81.0
SEGI_37248 Sequoiadendron giganteum HOM05D006344 ORTHO05D007744 2.0e-71 274.2 221 58.4
AagrBONN_evm.TU.Sc2ySwM_117.1538 Anthoceros agrestis HOM05D006344 ORTHO05D007744 1.4e-61 241.5 559 30.1
SMO340G0133 Selaginella moellendorffii HOM05D002542 ORTHO05D007744 4.9e-54 216.5 448 32.4
Mapoly0089s0048 Marchantia polymorpha HOM05D006344 ORTHO05D007744 1.4e-53 214.9 603 28.9
Atru.chr5.115 Acer truncatum HOM05D006344 ORTHO05D007744 4.9e-46 189.9 221 50.2
SMO356G0573 Selaginella moellendorffii HOM05D002542 ORTHO05D005078 1.5e-39 168.3 363 32.2
Lj9A555T32 Lonicera japonica HOM05D006344 ORTHO05D007744 5.4e-37 159.8 138 60.9
SEGI_14599 Sequoiadendron giganteum HOM05D006344 ORTHO05D007744 1.3e-33 148.7 182 45.6
HanXRQChr09g0257941 Helianthus annuus HOM05D006344 ORTHO05D007744 2.8e-25 120.9 108 57.4
SEGI_30390 Sequoiadendron giganteum HOM05D006344 ORTHO05D007744 2.4e-24 117.9 103 55.3
Peaxi162Scf00562g00069 Petunia axillaris HOM05D006344 ORTHO05D007744 3.8e-22 110.5 148 43.2
Actinidia26517 Actinidia chinensis HOM05D006344 ORTHO05D007744 4.2e-21 107.1 60 78.3
CDE06G0422 Ceratophyllum demersum HOM05D006344 ORTHO05D007744 3.7e-17 94.0 58 69.0
CBR_g48168 Chara braunii HOM05D006344 ORTHO05D007744 2.0e-15 88.2 164 33.5
Peaxi162Scf00562g00611 Petunia axillaris HOM05D006344 ORTHO05D007744 6.5e-14 83.2 69 66.7
COL.COLO4_10413 Corchorus olitorius HOM05D006344 ORTHO05D007744 4.3e-10 70.5 73 54.8
Cre16.g684900 Chlamydomonas reinhardtii HOM05D006344 ORTHO05D007744 3.7e-09 67.4 150 31.3
BcaB08g35012 Brassica carinata HOM05D006344 ORTHO05D007744 1.1e-08 65.9 42 66.7
CBR_g48169 Chara braunii HOM05D006344 ORTHO05D007744 1.2e-07 62.4 81 38.3
HanXRQChr01g0015371 Helianthus annuus HOM05D000263 ORTHO05D000213 2.0e-07 61.6 41 63.4


User provided reference genes

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