Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.2066 Avicennia marina HOM05D004580 ORTHO05D005917 6.5e-229 797.0 384 100.0
MSTRG.13678 Avicennia marina HOM05D004580 ORTHO05D005917 2.6e-193 678.7 384 84.4
Migut.E00684 Erythranthe guttata HOM05D004580 ORTHO05D005917 5.3e-178 627.9 359 83.6
SGA_v2.0_scaffold358G49840 Striga asiatica HOM05D004580 ORTHO05D005917 1.9e-172 609.4 363 80.2
Oeu036766.1 Olea europaea HOM05D004580 ORTHO05D005917 2.5e-172 609.0 381 76.1
Nitab4.5_0000069g0120 Nicotiana tabacum HOM05D004580 ORTHO05D005917 1.1e-170 603.6 373 77.2
Nitab4.5_0013217g0010 Nicotiana tabacum HOM05D004580 ORTHO05D005917 9.9e-169 597.0 373 76.7
PGSC0003DMG402016396 Solanum tuberosum HOM05D004580 ORTHO05D005917 4.9e-168 594.7 375 76.0
Sopen01g003800 Solanum pennellii HOM05D004580 ORTHO05D005917 1.2e-166 590.1 357 79.0
Solyc01g008280.4 Solanum lycopersicum HOM05D004580 ORTHO05D005917 1.9e-164 582.8 357 77.9
Manes.18G065933 Manihot esculenta HOM05D004580 ORTHO05D005917 9.6e-156 553.9 390 68.5
Hma1.2p1_0044F.1_g026170 Hydrangea macrophylla HOM05D004580 ORTHO05D005917 1.8e-154 549.7 360 71.7
Ciclev10001487m.g Citrus clementina HOM05D004580 ORTHO05D005917 2.0e-153 546.2 380 68.2
Eucgr.B00032 Eucalyptus grandis HOM05D004580 ORTHO05D005917 1.3e-152 543.5 364 70.9
CiPaw.07G178200 Carya illinoinensis HOM05D004580 ORTHO05D005917 3.8e-152 542.0 383 67.9
Cfa013658 Carpinus fangiana HOM05D004580 ORTHO05D005917 1.9e-151 539.7 383 68.7
COL.COLO4_12032 Corchorus olitorius HOM05D004580 ORTHO05D005917 1.9e-151 539.7 386 66.3
AT4G08960 Arabidopsis thaliana HOM05D004580 ORTHO05D005917 5.5e-151 538.1 397 65.7
Atru.chr13.1137 Acer truncatum HOM05D004580 ORTHO05D005917 7.2e-151 537.7 357 71.4
PGR031G1028 Punica granatum HOM05D004580 ORTHO05D005917 9.3e-151 537.3 362 69.1
Carub.0006s2756 Capsella rubella HOM05D004580 ORTHO05D005917 1.6e-150 536.6 372 69.1
Dinv17643 Davidia involucrata HOM05D004580 ORTHO05D005917 1.6e-150 536.6 345 73.0
Gorai.010G039500 Gossypium raimondii HOM05D004580 ORTHO05D005917 1.6e-150 536.6 387 66.7
AL6G41550 Arabidopsis lyrata HOM05D004580 ORTHO05D005917 2.1e-150 536.2 398 65.3
VMungo1127G0933 Vigna mungo HOM05D004580 ORTHO05D005917 2.1e-150 536.2 360 72.8
Lsat_1_v5_gn_4_64561 Lactuca sativa HOM05D004580 ORTHO05D005917 2.7e-150 535.8 364 70.1
BcaC01g04745 Brassica carinata HOM05D004580 ORTHO05D005917 3.5e-150 535.4 392 65.6
CARHR259970 Cardamine hirsuta HOM05D004580 ORTHO05D005917 3.5e-150 535.4 402 63.9
Haze_22292 Corylus avellana HOM05D004580 ORTHO05D005917 4.6e-150 535.0 390 67.2
Cpa.g.sc36.160 Carica papaya HOM05D004580 ORTHO05D005917 7.9e-150 534.3 395 64.6
ECA236G1081 Erigeron canadensis HOM05D004580 ORTHO05D005917 1.8e-149 533.1 388 67.8
Gohir.A06G034900 Gossypium hirsutum HOM05D004580 ORTHO05D005917 1.8e-149 533.1 387 66.1
C09p37760 Brassica napus HOM05D004580 ORTHO05D005917 2.3e-149 532.7 391 65.2
BolC9t56609H Brassica oleracea HOM05D004580 ORTHO05D005917 2.3e-149 532.7 391 65.2
Duzib093G0091 Durio zibethinus HOM05D004580 ORTHO05D005917 2.3e-149 532.7 388 65.7
Gohir.D06G035500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 2.3e-149 532.7 387 66.4
Potri.005G162900 Populus trichocarpa HOM05D004580 ORTHO05D005917 5.1e-149 531.6 396 64.6
TAR625G1360 Trochodendron aralioides HOM05D004580 ORTHO05D005917 8.7e-149 530.8 351 71.8
C03p34240 Brassica napus HOM05D004580 ORTHO05D005917 1.5e-148 530.0 388 65.5
BolC3t15733H Brassica oleracea HOM05D004580 ORTHO05D005917 1.5e-148 530.0 388 65.5
ClCG08G011200 Citrullus lanatus HOM05D004580 ORTHO05D005917 1.5e-148 530.0 363 70.8
Sabra05G0123100 Salix brachista HOM05D004580 ORTHO05D005917 1.5e-148 530.0 391 65.0
CsaV3_2G029780 Cucumis sativus L. HOM05D004580 ORTHO05D005917 1.9e-148 529.6 363 70.5
Phvul.011G102600 Phaseolus vulgaris HOM05D004580 ORTHO05D005917 1.9e-148 529.6 360 71.7
TWI12G1022 Tripterygium wilfordii HOM05D004580 ORTHO05D005917 1.9e-148 529.6 364 69.5
A03p28330 Brassica napus HOM05D004580 ORTHO05D005917 2.5e-148 529.3 388 65.2
HanXRQChr04g0124871 Helianthus annuus HOM05D004580 ORTHO05D005917 4.3e-148 528.5 384 67.2
THA.LOC104813113 Tarenaya hassleriana HOM05D004580 ORTHO05D005917 4.3e-148 528.5 395 64.8
BcaB01g02835 Brassica carinata HOM05D004580 ORTHO05D005917 5.7e-148 528.1 392 64.5
BraA03t12037Z Brassica rapa HOM05D004580 ORTHO05D005917 5.7e-148 528.1 388 65.2
Prupe.1G521000 Prunus persica HOM05D004580 ORTHO05D005917 5.7e-148 528.1 387 66.1
Sed0021368 Sechium edule HOM05D004580 ORTHO05D005917 5.7e-148 528.1 367 67.3
Sp6g08660 Schrenkiella parvula HOM05D004580 ORTHO05D005917 7.4e-148 527.7 393 64.9
BcaB01g02823 Brassica carinata HOM05D004580 ORTHO05D005917 9.7e-148 527.3 392 64.5
Potri.002G099000 Populus trichocarpa HOM05D004580 ORTHO05D005917 1.6e-147 526.6 394 65.7
Glyma.11G184601 Glycine max HOM05D004580 ORTHO05D005917 2.2e-147 526.2 345 73.9
vmacro15988 Vaccinium macrocarpon HOM05D004580 ORTHO05D005917 2.2e-147 526.2 364 69.2
DCAR_002598 Daucus carota HOM05D004580 ORTHO05D005917 3.7e-147 525.4 385 67.0
BcaB01g02381 Brassica carinata HOM05D004580 ORTHO05D005917 4.8e-147 525.0 390 64.9
MELO3C011036.2 Cucumis melo HOM05D004580 ORTHO05D005917 4.8e-147 525.0 364 69.2
Nn5g30036 Nelumbo nucifera HOM05D004580 ORTHO05D005917 4.8e-147 525.0 364 69.0
Aa31LG9G14650 Aethionema arabicum HOM05D004580 ORTHO05D005917 6.3e-147 524.6 370 67.3
FvH4_6g23990 Fragaria vesca HOM05D004580 ORTHO05D005917 8.2e-147 524.2 375 65.9
FAN14G1039 Fragaria x ananassa HOM05D004580 ORTHO05D005917 8.2e-147 524.2 375 65.9
DCAR_023183 Daucus carota HOM05D004580 ORTHO05D005917 1.1e-146 523.9 363 70.0
Thhalv10028722m.g Eutrema salsugineum HOM05D004580 ORTHO05D005917 1.1e-146 523.9 397 64.7
Aqoxy7G04111 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 3.1e-146 522.3 338 71.0
Actinidia04333 Actinidia chinensis HOM05D004580 ORTHO05D005917 4.1e-146 521.9 358 68.7
Duzib041G0230 Durio zibethinus HOM05D004580 ORTHO05D005917 4.1e-146 521.9 392 64.5
arahy.Tifrunner.gnm1.ann1.UE4JHM Arachis hypogaea HOM05D004580 ORTHO05D005917 5.3e-146 521.5 352 70.5
MD15G1419400 Malus domestica HOM05D004580 ORTHO05D005917 5.3e-146 521.5 361 67.6
Thecc.08G104300 Theobroma cacao HOM05D004580 ORTHO05D005917 5.3e-146 521.5 388 64.7
Nn5g30292 Nelumbo nucifera HOM05D004580 ORTHO05D005917 6.9e-146 521.2 336 72.3
RcHm_v2.0_Chr7g0243401 Rosa chinensis HOM05D004580 ORTHO05D005917 6.9e-146 521.2 356 69.4
CANSAT25G2089 Cannabis sativa HOM05D004580 ORTHO05D005917 9.0e-146 520.8 360 68.3
arahy.Tifrunner.gnm1.ann1.T3Z839 Arachis hypogaea HOM05D004580 ORTHO05D005917 2.6e-145 519.2 351 70.7
QL12p037342 Quercus lobata HOM05D004580 ORTHO05D005917 2.6e-145 519.2 360 68.3
RcHm_v2.0_Chr1g0321971 Rosa chinensis HOM05D004580 ORTHO05D005917 3.4e-145 518.8 363 68.3
Sabra02G0077800 Salix brachista HOM05D004580 ORTHO05D005917 3.2e-143 512.3 391 64.7
FAN05G1019 Fragaria x ananassa HOM05D004580 ORTHO05D005917 5.5e-143 511.5 346 68.5
BcaC04g20934 Brassica carinata HOM05D004580 ORTHO05D005917 2.1e-142 509.6 391 63.9
Sc10g0006870 Simmondsia chinensis HOM05D004580 ORTHO05D005917 3.6e-142 508.8 379 64.6
MD08G1227100 Malus domestica HOM05D004580 ORTHO05D005917 4.6e-142 508.4 353 67.4
PSO541G6503 Papaver somniferum HOM05D004580 ORTHO05D005917 1.0e-141 507.3 371 65.0
CSS0036827 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 3.9e-141 505.4 362 68.2
CSS0039091 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 6.7e-141 504.6 360 68.3
Ah.01g012710 Amaranthus hybridus HOM05D004580 ORTHO05D005917 2.5e-140 502.7 393 62.1
PSO781G0322 Papaver somniferum HOM05D004580 ORTHO05D005917 7.4e-140 501.1 358 64.8
Peaxi162Scf00021g02317 Petunia axillaris HOM05D004580 ORTHO05D005917 2.2e-139 499.6 365 67.7
ClCG11G014220 Citrullus lanatus HOM05D004580 ORTHO05D005917 1.1e-138 497.3 356 66.3
Hund08631 Selenicereus undatus HOM05D004580 ORTHO05D005917 1.1e-138 497.3 404 60.9
CsaV3_3G047600 Cucumis sativus L. HOM05D004580 ORTHO05D005917 1.4e-138 496.9 344 67.2
MELO3C003564.2 Cucumis melo HOM05D004580 ORTHO05D005917 2.4e-138 496.1 343 67.3
TAR381G0740 Trochodendron aralioides HOM05D004580 ORTHO05D005917 3.1e-138 495.7 351 68.1
ATR0706G027 Amborella trichopoda HOM05D004580 ORTHO05D005917 1.2e-137 493.8 337 69.7
AUR62017729 Chenopodium quinoa HOM05D004580 ORTHO05D005917 1.5e-137 493.4 371 63.9
MBI05_g34722_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 5.9e-137 491.5 377 62.6
Sed0008659 Sechium edule HOM05D004580 ORTHO05D005917 5.9e-137 491.5 326 68.4
Lj3P847T35 Lonicera japonica HOM05D004580 ORTHO05D005917 7.7e-137 491.1 306 74.2
CSS0011251 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 6.5e-136 488.0 309 72.8
Medtr4g053370 Medicago truncatula HOM05D004580 ORTHO05D005917 9.4e-135 484.2 351 67.0
Psat7g188520 Pisum sativum HOM05D004580 ORTHO05D005917 9.4e-135 484.2 369 64.0
Rhsim09G0069400 Rhododendron simsii HOM05D004580 ORTHO05D005917 9.4e-135 484.2 390 62.3
PSO541G6453 Papaver somniferum HOM05D004580 ORTHO05D005917 1.6e-134 483.4 360 63.3
Nn1g05417 Nelumbo nucifera HOM05D004580 ORTHO05D005917 2.1e-134 483.0 346 67.6
Lalb_Chr03g0028011 Lupinus albus HOM05D004580 ORTHO05D005917 7.9e-134 481.1 374 62.6
GSVIVG01009068001 Vitis vinifera HOM05D004580 ORTHO05D005917 5.1e-133 478.4 345 67.0
Ca_19393_v3 Cicer arietinum L. HOM05D004580 ORTHO05D005917 6.7e-133 478.0 368 64.1
EL10Ac9g22979 Beta vulgaris HOM05D004580 ORTHO05D005917 4.8e-131 471.9 343 64.4
CDE05G3003 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 7.0e-130 468.0 351 64.1
Lj3g0026440 Lotus japonicus HOM05D004580 ORTHO05D005917 2.2e-128 463.0 347 65.4
FvH4_5g29380 Fragaria vesca HOM05D004580 ORTHO05D005917 8.5e-128 461.1 337 65.3
SEGI_24357 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 3.6e-126 455.7 365 61.4
HPP92_004278 Vanilla planifolia HOM05D004580 ORTHO05D005917 8.0e-126 454.5 369 63.1
MBI02_g02175_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 2.3e-125 453.0 332 64.2
Os06g0219800 Oryza sativa ssp. japonica HOM05D004580 ORTHO05D005917 8.2e-123 444.5 395 57.7
Zm00001eb372770 Zea mays HOM05D004580 ORTHO05D005917 4.1e-122 442.2 384 58.9
AagrBONN_evm.TU.Sc2ySwM_117.2526 Anthoceros agrestis HOM05D004580 ORTHO05D005917 8.5e-120 434.5 334 62.3
Pp3c1_41950 Physcomitrium patens HOM05D004580 ORTHO05D005917 8.5e-120 434.5 334 61.1
SHI33348 Sapria himalayana HOM05D004580 ORTHO05D005917 1.9e-119 433.3 395 55.9
Mapoly0004s0171 Marchantia polymorpha HOM05D004580 ORTHO05D005917 4.7e-118 428.7 343 59.5
Pp3c2_670 Physcomitrium patens HOM05D004580 ORTHO05D005917 8.8e-117 424.5 298 65.4
Gorai.009G235200 Gossypium raimondii HOM05D004580 ORTHO05D005917 2.2e-115 419.9 343 60.3
SMO329G0013 Selaginella moellendorffii HOM05D004580 ORTHO05D005917 1.8e-114 416.8 322 61.2
Gohir.D05G227500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 6.5e-112 408.3 256 73.0
FAN18G2046 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.8e-109 400.2 286 65.7
HPP92_016361 Vanilla planifolia HOM05D004580 ORTHO05D005917 1.5e-108 397.1 355 57.5
CBR_g45439 Chara braunii HOM05D004580 ORTHO05D005917 1.4e-106 390.6 381 53.0
Gohir.A05G224950 Gossypium hirsutum HOM05D004580 ORTHO05D005917 3.3e-103 379.4 304 61.5
Glyma.12G087751 Glycine max HOM05D004580 ORTHO05D005917 5.6e-103 378.6 206 85.9
unitig_8.g3592 Utricularia gibba HOM05D004580 ORTHO05D005917 6.1e-102 375.2 201 84.6
FAN02G1810 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.7e-99 367.1 200 81.5
Lalb_Chr19g0136591 Lupinus albus HOM05D004580 ORTHO05D005917 5.9e-97 358.6 387 49.6
TPR.G17228 Trifolium pratense HOM05D004580 ORTHO05D005917 1.9e-95 353.6 311 56.6
CAN.G282.45 Capsicum annuum HOM05D004580 ORTHO05D005917 1.5e-87 327.4 231 70.1
BraA09t38542Z Brassica rapa HOM05D004580 ORTHO05D005917 2.5e-87 326.6 221 69.2
A09p29790 Brassica napus HOM05D004580 ORTHO05D005917 1.8e-85 320.5 179 81.0
Aqoxy6G00748 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 4.7e-78 295.8 237 60.8
Oeu013193.1 Olea europaea HOM05D004580 ORTHO05D005917 1.5e-76 290.8 192 72.4
Cre13.g580650 Chlamydomonas reinhardtii HOM05D004580 ORTHO05D005917 6.4e-75 285.4 395 39.5
SEGI_19435 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 2.4e-74 283.5 294 49.0
PRCOL_00005481 Prasinoderma coloniale HOM05D004580 ORTHO05D005917 4.1e-74 282.7 345 42.9
FAN24G1342 Fragaria x ananassa HOM05D004580 ORTHO05D005917 9.2e-74 281.6 229 60.3
MCO01G633 Micromonas commoda HOM05D004580 ORTHO05D005917 1.8e-69 267.3 302 43.4
FvH4_2g11953 Fragaria vesca HOM05D004580 ORTHO05D000007 7.6e-68 261.9 221 57.9
Cfa021829 Carpinus fangiana HOM05D004580 ORTHO05D011646 8.4e-59 231.9 357 37.5
CDE05G0498 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 1.8e-56 224.2 215 52.6
Cfa001645 Carpinus fangiana HOM05D004580 ORTHO05D020348 1.1e-53 214.9 360 35.6
GSVIVG01009057001 Vitis vinifera HOM05D004580 ORTHO05D005917 1.4e-45 188.0 127 71.7
FAN24G1075 Fragaria x ananassa HOM05D004580 ORTHO05D005917 6.1e-33 146.0 148 51.4
Nn3g16512 Nelumbo nucifera HOM05D004580 ORTHO05D005917 3.0e-24 117.1 64 81.2
Nn5g29558 Nelumbo nucifera HOM05D004580 ORTHO05D005917 4.4e-23 113.2 112 50.0
Cfa014845 Carpinus fangiana HOM05D000016 ORTHO05D000725 7.4e-23 112.5 110 46.4
FvH4_4g06652 Fragaria vesca HOM05D004580 ORTHO05D000031 7.7e-20 102.4 57 77.2
unitig_8.g3591 Utricularia gibba HOM05D004580 ORTHO05D005917 1.8e-13 81.3 98 53.1
Nitab4.5_0006124g0020 Nicotiana tabacum HOM05D000011 ORTHO05D036898 1.7e-06 58.2 29 82.8


User provided reference genes

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