Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.2058 Avicennia marina HOM05D000083 ORTHO05D003582 0.0e+00 1521.9 778 100.0
SalBow6G1016 Salvia bowleyana HOM05D000083 ORTHO05D003582 0.0e+00 1214.1 784 81.0
SGA_v2.0_scaffold99G29461 Striga asiatica HOM05D000083 ORTHO05D003582 0.0e+00 1184.1 815 77.8
Dinv11712 Davidia involucrata HOM05D000083 ORTHO05D003582 0.0e+00 1144.0 787 76.4
Rhsim09G0073200 Rhododendron simsii HOM05D000083 ORTHO05D003582 0.0e+00 1120.5 786 75.2
Cc00_g03930 Coffea canephora HOM05D000083 ORTHO05D003582 0.0e+00 1109.7 786 75.2
Lj3C850G18 Lonicera japonica HOM05D000083 ORTHO05D003582 0.0e+00 1104.0 789 75.0
Potri.005G094200 Populus trichocarpa HOM05D000083 ORTHO05D003582 1.1e-311 1073.2 794 70.9
Peaxi162Scf00363g00731 Petunia axillaris HOM05D000083 ORTHO05D003582 6.4e-311 1070.5 787 72.3
TAR629G3380 Trochodendron aralioides HOM05D000083 ORTHO05D003582 6.4e-308 1060.4 796 71.5
Solyc11g033270.2 Solanum lycopersicum HOM05D000083 ORTHO05D003582 1.6e-306 1055.8 784 71.8
GSVIVG01012031001 Vitis vinifera HOM05D000083 ORTHO05D003582 4.6e-306 1054.3 774 73.5
Potri.007G070100 Populus trichocarpa HOM05D000083 ORTHO05D003582 1.0e-305 1053.1 795 70.2
Ciclev10030510m.g Citrus clementina HOM05D000083 ORTHO05D003582 2.3e-305 1052.0 796 71.0
Sopen11g015750 Solanum pennellii HOM05D000083 ORTHO05D003582 5.1e-305 1050.8 784 71.4
Oeu027907.6 Olea europaea HOM05D000083 ORTHO05D003582 1.5e-304 1049.3 784 72.2
Manes.11G101900 Manihot esculenta HOM05D000083 ORTHO05D003582 1.9e-304 1048.9 788 70.9
Thecc.02G160900 Theobroma cacao HOM05D000083 ORTHO05D003582 7.4e-304 1047.0 794 70.3
MD13G1006900 Malus domestica HOM05D000083 ORTHO05D003582 2.1e-303 1045.4 794 70.7
QL03p043964 Quercus lobata HOM05D000083 ORTHO05D003582 4.8e-303 1044.3 806 70.0
TWI53G2094 Tripterygium wilfordii HOM05D000083 ORTHO05D003582 8.1e-303 1043.5 793 70.4
Peaxi162Scf01172g00034 Petunia axillaris HOM05D000083 ORTHO05D003582 1.4e-302 1042.7 786 71.0
CAN.G624.28 Capsicum annuum HOM05D000083 ORTHO05D003582 1.8e-302 1042.3 784 70.8
RcHm_v2.0_Chr4g0446521 Rosa chinensis HOM05D000083 ORTHO05D003582 3.1e-302 1041.6 793 70.5
vmacro10904 Vaccinium macrocarpon HOM05D000083 ORTHO05D003582 3.1e-302 1041.6 765 72.7
Aqoxy7G03614 Aquilegia oxysepala HOM05D000083 ORTHO05D003582 4.0e-302 1041.2 795 69.9
CiPaw.04G139600 Carya illinoinensis HOM05D000083 ORTHO05D003582 4.0e-302 1041.2 792 70.7
Sabra05G0078000 Salix brachista HOM05D000083 ORTHO05D003582 5.3e-302 1040.8 837 67.0
Gohir.A03G164300 Gossypium hirsutum HOM05D000083 ORTHO05D003582 9.0e-302 1040.0 794 70.5
MD16G1000900 Malus domestica HOM05D000083 ORTHO05D003582 3.4e-301 1038.1 794 70.4
Lj3g0012190 Lotus japonicus HOM05D000083 ORTHO05D003582 5.8e-301 1037.3 783 70.8
Haze_11721 Corylus avellana HOM05D000083 ORTHO05D003582 1.7e-300 1035.8 853 66.8
Prupe.1G346000 Prunus persica HOM05D000083 ORTHO05D003582 2.9e-300 1035.0 789 70.6
Duzib132G0002 Durio zibethinus HOM05D000083 ORTHO05D003582 3.8e-300 1034.6 798 69.3
DCAR_030398 Daucus carota HOM05D000083 ORTHO05D003582 4.9e-300 1034.2 778 71.7
FvH4_4g36790 Fragaria vesca HOM05D000083 ORTHO05D003582 1.9e-299 1032.3 792 70.2
TAR371G0617 Trochodendron aralioides HOM05D000083 ORTHO05D003582 2.4e-299 1031.9 796 70.5
FAN07G1039 Fragaria x ananassa HOM05D000083 ORTHO05D003582 3.2e-299 1031.6 794 70.0
HanXRQChr17g0540841 Helianthus annuus HOM05D000083 ORTHO05D003582 5.5e-299 1030.8 774 71.8
CsaV3_3G031470 Cucumis sativus L. HOM05D000083 ORTHO05D003582 2.1e-298 1028.9 796 69.8
MELO3C024030.2 Cucumis melo HOM05D000083 ORTHO05D003582 2.7e-298 1028.5 799 69.6
Duzib248G1611 Durio zibethinus HOM05D000083 ORTHO05D003582 2.3e-297 1025.4 794 69.0
Gorai.005G210100 Gossypium raimondii HOM05D000083 ORTHO05D003582 3.0e-297 1025.0 794 69.5
FAN12G3263 Fragaria x ananassa HOM05D000083 ORTHO05D003582 3.9e-297 1024.6 801 69.4
TWI74G1512 Tripterygium wilfordii HOM05D000083 ORTHO05D003582 3.9e-297 1024.6 794 69.6
HanXRQChr06g0172001 Helianthus annuus HOM05D000083 ORTHO05D003582 3.3e-296 1021.5 773 71.5
Gohir.D02G187600 Gossypium hirsutum HOM05D000083 ORTHO05D003582 4.3e-296 1021.1 794 69.4
Nn7g37822 Nelumbo nucifera HOM05D000083 ORTHO05D003582 9.6e-296 1020.0 776 72.0
PSO063G5474 Papaver somniferum HOM05D000083 ORTHO05D003582 1.4e-294 1016.1 786 71.1
Ca_19030_v3 Cicer arietinum L. HOM05D000083 ORTHO05D003582 1.8e-294 1015.8 779 70.2
PSO782G1916 Papaver somniferum HOM05D000083 ORTHO05D003582 4.0e-294 1014.6 786 70.9
AUR62017682 Chenopodium quinoa HOM05D000083 ORTHO05D003582 5.8e-293 1010.7 775 71.2
Glyma.12G027600 Glycine max HOM05D000083 ORTHO05D003582 7.6e-293 1010.4 780 69.6
ClCG10G011890 Citrullus lanatus HOM05D000083 ORTHO05D003582 1.0e-292 1010.0 833 66.9
Glyma.11G101700 Glycine max HOM05D000083 ORTHO05D003582 1.7e-292 1009.2 780 69.4
AUR62015218 Chenopodium quinoa HOM05D000083 ORTHO05D003582 2.9e-292 1008.4 775 71.0
CANSAT64G2172 Cannabis sativa HOM05D000083 ORTHO05D003582 6.5e-292 1007.3 791 69.5
Psat7g176440 Pisum sativum HOM05D000083 ORTHO05D003582 8.4e-292 1006.9 783 69.1
ECA246G2960 Erigeron canadensis HOM05D000083 ORTHO05D003582 3.5e-290 1001.5 780 70.5
Lalb_Chr19g0139361 Lupinus albus HOM05D000083 ORTHO05D003582 4.6e-290 1001.1 775 68.8
Sabra07G0058700 Salix brachista HOM05D000083 ORTHO05D003582 4.6e-290 1001.1 802 66.8
DCAR_023443 Daucus carota HOM05D000083 ORTHO05D003582 3.9e-289 998.0 775 68.4
Sed0020503 Sechium edule HOM05D000083 ORTHO05D003582 1.1e-288 996.5 795 67.8
FAN17G2779 Fragaria x ananassa HOM05D000083 ORTHO05D003582 1.9e-288 995.7 840 66.0
Medtr4g075410 Medicago truncatula HOM05D000083 ORTHO05D003582 1.9e-288 995.7 779 68.4
Ah.01g012890 Amaranthus hybridus HOM05D000083 ORTHO05D003582 2.1e-287 992.3 775 70.2
Gohir.D12G137900 Gossypium hirsutum HOM05D000083 ORTHO05D003582 3.7e-287 991.5 794 67.5
Migut.E00701 Erythranthe guttata HOM05D000083 ORTHO05D003582 4.8e-287 991.1 700 76.1
VMungo1383G1323 Vigna mungo HOM05D000083 ORTHO05D003582 2.4e-286 988.8 774 69.1
Gorai.008G149400 Gossypium raimondii HOM05D000083 ORTHO05D003582 4.1e-286 988.0 794 67.3
Phvul.011G030800 Phaseolus vulgaris HOM05D000083 ORTHO05D003582 1.2e-285 986.5 773 69.6
Gohir.A12G134300 Gossypium hirsutum HOM05D000083 ORTHO05D003582 5.9e-285 984.2 794 67.3
Medtr4g074875 Medicago truncatula HOM05D000083 ORTHO05D003582 1.0e-284 983.4 778 68.3
THA.LOC104822679 Tarenaya hassleriana HOM05D000083 ORTHO05D003582 3.8e-284 981.5 772 69.4
EL10Ac9g22930 Beta vulgaris HOM05D000083 ORTHO05D003582 1.2e-282 976.5 774 69.3
PGR044G0594 Punica granatum HOM05D000083 ORTHO05D003582 6.1e-282 974.2 773 67.8
ATR0326G043 Amborella trichopoda HOM05D000083 ORTHO05D003582 6.7e-281 970.7 808 66.6
Gohir.A01G013000 Gossypium hirsutum HOM05D000083 ORTHO05D003582 6.7e-281 970.7 780 68.1
arahy.Tifrunner.gnm1.ann1.FSDW2L Arachis hypogaea HOM05D000083 ORTHO05D003582 8.7e-281 970.3 773 69.3
Gorai.002G016000 Gossypium raimondii HOM05D000083 ORTHO05D003582 1.1e-280 969.9 776 68.2
arahy.Tifrunner.gnm1.ann1.ZIJB47 Arachis hypogaea HOM05D000083 ORTHO05D003582 9.7e-280 966.8 772 68.7
Gohir.D01G014300 Gossypium hirsutum HOM05D000083 ORTHO05D003582 2.8e-279 965.3 776 67.9
Eucgr.J00858 Eucalyptus grandis HOM05D000083 ORTHO05D003582 7.7e-277 957.2 776 67.0
Lsat_1_v5_gn_3_33541 Lactuca sativa HOM05D000083 ORTHO05D003582 1.0e-276 956.8 773 68.0
Carub.0003s1301 Capsella rubella HOM05D000083 ORTHO05D003582 3.8e-276 954.9 773 67.8
CARHR088200 Cardamine hirsuta HOM05D000083 ORTHO05D003582 1.4e-275 953.0 774 68.5
AL3G25440 Arabidopsis lyrata HOM05D000083 ORTHO05D003582 4.2e-275 951.4 773 67.5
AT3G13530 Arabidopsis thaliana HOM05D000083 ORTHO05D003582 1.6e-274 949.5 774 67.6
Sabra07G0058200 Salix brachista HOM05D000083 ORTHO05D003582 7.9e-274 947.2 807 63.7
Nitab4.5_0002113g0210 Nicotiana tabacum HOM05D000083 ORTHO05D003582 1.1e-272 943.3 784 66.6
Aa31LG10G1090 Aethionema arabicum HOM05D000083 ORTHO05D003582 2.0e-272 942.6 774 66.9
BolC3t16908H Brassica oleracea HOM05D000083 ORTHO05D003582 6.3e-271 937.6 773 67.4
BcaB04g18769 Brassica carinata HOM05D000083 ORTHO05D003582 1.1e-270 936.8 773 67.8
Ah.01g001600 Amaranthus hybridus HOM05D000083 ORTHO05D003582 6.9e-270 934.1 791 65.2
C03p46440 Brassica napus HOM05D000083 ORTHO05D003582 1.2e-269 933.3 773 67.1
Thhalv10019902m.g Eutrema salsugineum HOM05D000083 ORTHO05D003582 5.9e-269 931.0 774 66.8
THA.LOC104810328 Tarenaya hassleriana HOM05D000083 ORTHO05D003582 1.9e-267 926.0 770 64.9
Sp3g06890 Schrenkiella parvula HOM05D000083 ORTHO05D003582 4.2e-267 924.9 774 66.5
Sc06g0007920 Simmondsia chinensis HOM05D000083 ORTHO05D003582 8.8e-265 917.1 736 67.1
Sp3g11740 Schrenkiella parvula HOM05D000083 ORTHO05D003582 1.1e-264 916.8 780 65.5
Aa31LG8G730 Aethionema arabicum HOM05D000083 ORTHO05D003582 2.8e-263 912.1 775 65.5
BcaC01g03989 Brassica carinata HOM05D000083 ORTHO05D003582 5.3e-262 907.9 773 65.6
TPR.G32329 Trifolium pratense HOM05D000083 ORTHO05D003582 5.3e-262 907.9 772 64.9
BraA03t12978Z Brassica rapa HOM05D000083 ORTHO05D003582 1.2e-261 906.7 773 65.6
A03p38250 Brassica napus HOM05D000083 ORTHO05D003582 8.5e-260 900.6 773 65.2
Carub.0003s0756 Capsella rubella HOM05D000083 ORTHO05D003582 1.2e-258 896.7 772 65.3
AT3G07980 Arabidopsis thaliana HOM05D000083 ORTHO05D003582 2.7e-258 895.6 773 64.6
Hund24289 Selenicereus undatus HOM05D000083 ORTHO05D003582 3.6e-258 895.2 774 65.2
Os04g0660500 Oryza sativa ssp. japonica HOM05D000083 ORTHO05D003582 5.7e-256 887.9 776 62.9
HPP92_002093 Vanilla planifolia HOM05D000083 ORTHO05D003582 7.7e-253 877.5 782 62.3
AL3G19360 Arabidopsis lyrata HOM05D000083 ORTHO05D003582 6.1e-250 867.8 773 63.3
Thhalv10019926m.g Eutrema salsugineum HOM05D000083 ORTHO05D003582 5.2e-249 864.8 714 67.1
CARHR082720 Cardamine hirsuta HOM05D000083 ORTHO05D003582 4.8e-247 858.2 774 62.3
Zm00001eb067530 Zea mays HOM05D000083 ORTHO05D003582 1.8e-246 856.3 773 59.5
CDE04G1078 Ceratophyllum demersum HOM05D000083 ORTHO05D003582 7.7e-245 850.9 778 61.3
Zm00001eb432730 Zea mays HOM05D000083 ORTHO05D003582 3.8e-244 848.6 773 59.2
BraA03t12735Z Brassica rapa HOM05D000083 ORTHO05D003582 1.1e-243 847.0 781 62.2
A03p35590 Brassica napus HOM05D000083 ORTHO05D003582 1.9e-243 846.3 781 62.2
C03p43230 Brassica napus HOM05D000083 ORTHO05D003582 2.5e-243 845.9 781 62.4
BolC3t16592H Brassica oleracea HOM05D000083 ORTHO05D003582 8.8e-241 837.4 781 61.8
SEGI_09729 Sequoiadendron giganteum HOM05D000083 ORTHO05D003582 2.6e-240 835.9 810 58.3
DCAR_004230 Daucus carota HOM05D000083 ORTHO05D003582 1.3e-236 823.5 784 60.6
PGSC0003DMG400007647 Solanum tuberosum HOM05D000083 ORTHO05D003582 1.7e-236 823.2 635 69.8
Lalb_Chr10g0095051 Lupinus albus HOM05D000083 ORTHO05D003582 7.8e-229 797.7 748 60.0
unitig_22.g5627 Utricularia gibba HOM05D000083 ORTHO05D003582 5.4e-222 775.0 631 66.2
Atru.chr11.1178 Acer truncatum HOM05D000083 ORTHO05D003582 1.5e-211 740.3 613 65.7
Lalb_Chr03g0024821 Lupinus albus HOM05D000083 ORTHO05D003582 1.6e-205 720.3 606 65.2
SMO198G0032 Selaginella moellendorffii HOM05D000083 ORTHO05D003582 4.6e-205 718.8 792 54.7
Cpa.g.sc119.48 Carica papaya HOM05D000083 ORTHO05D003582 7.3e-203 711.4 620 64.7
SEGI_08600 Sequoiadendron giganteum HOM05D000083 ORTHO05D003582 6.0e-197 691.8 800 51.4
Mapoly0140s0044 Marchantia polymorpha HOM05D000083 ORTHO05D003582 1.3e-194 684.1 822 50.2
BcaB03g11558 Brassica carinata HOM05D000083 ORTHO05D003582 5.8e-192 675.2 782 55.5
Oeu033540.1 Olea europaea HOM05D000083 ORTHO05D003582 7.6e-192 674.9 527 69.4
BcaB04g20987 Brassica carinata HOM05D000083 ORTHO05D003582 1.2e-189 667.5 774 53.2
C01p51560 Brassica napus HOM05D000083 ORTHO05D003582 1.2e-189 667.5 774 53.2
A01p40080 Brassica napus HOM05D000083 ORTHO05D003582 3.9e-188 662.5 774 53.1
BcaB03g11553 Brassica carinata HOM05D000083 ORTHO05D003582 1.1e-185 654.4 779 53.7
BolC1t05099H Brassica oleracea HOM05D000083 ORTHO05D003582 1.1e-185 654.4 774 53.0
BraA01t04049Z Brassica rapa HOM05D000083 ORTHO05D003582 1.8e-185 653.7 774 52.8
Pp3c15_11760 Physcomitrium patens HOM05D000083 ORTHO05D003582 1.3e-178 630.9 785 47.1
HPP92_002088 Vanilla planifolia HOM05D000083 ORTHO05D003582 7.9e-173 611.7 420 76.7
DCAR_026911 Daucus carota HOM05D000083 ORTHO05D003582 2.3e-172 610.1 771 46.8
Pp3c15_25040 Physcomitrium patens HOM05D000083 ORTHO05D003582 1.0e-167 594.7 793 46.8
Pp3c9_25590 Physcomitrium patens HOM05D000083 ORTHO05D003582 1.3e-159 567.8 800 45.9
Sed0024928 Sechium edule HOM05D000083 ORTHO05D003582 1.2e-144 518.1 508 57.7
SHI17990 Sapria himalayana HOM05D000083 ORTHO05D003582 8.8e-140 501.9 350 75.7
CBR_g38927 Chara braunii HOM05D000083 ORTHO05D003582 8.0e-133 478.8 775 38.8
Hma1.2p1_0005F.1_g004230 Hydrangea macrophylla HOM05D000083 ORTHO05D003582 2.0e-131 474.2 484 58.3
Nitab4.5_0011898g0010 Nicotiana tabacum HOM05D000083 ORTHO05D003582 8.9e-108 395.6 768 38.4
PRCOL_00002034 Prasinoderma coloniale HOM05D000083 ORTHO05D003582 6.2e-93 346.3 778 32.4
CBR_g66805 Chara braunii HOM05D000083 ORTHO05D003582 4.0e-92 343.6 677 35.2
BcaB03g11561 Brassica carinata HOM05D000083 ORTHO05D003582 3.5e-88 330.5 449 48.3
Lalb_Chr03g0024811 Lupinus albus HOM05D000083 ORTHO05D003582 8.4e-82 309.3 174 87.4
MSTRG.2055 Avicennia marina HOM05D000083 ORTHO05D003582 6.6e-79 299.7 148 100.0
BcaB03g11559 Brassica carinata HOM05D000083 ORTHO05D003582 7.3e-78 296.2 233 70.4
SHI17994 Sapria himalayana HOM05D000083 ORTHO05D003582 8.7e-71 272.7 339 49.9
Oeu057598.1 Olea europaea HOM05D000083 ORTHO05D003582 7.6e-67 259.6 225 65.8
Atru.chr11.1179 Acer truncatum HOM05D000083 ORTHO05D003582 3.5e-64 250.8 142 89.4
Hma1.2p1_0499F.1_g166780 Hydrangea macrophylla HOM05D000083 ORTHO05D003582 3.5e-64 250.8 150 83.3
A05p35920 Brassica napus HOM05D000083 ORTHO05D003582 3.0e-63 247.7 172 74.4
BraA05t22398Z Brassica rapa HOM05D000083 ORTHO05D003582 3.0e-63 247.7 172 74.4
Ah.07g198430 Amaranthus hybridus HOM05D005111 ORTHO05D003582 4.5e-59 233.8 238 58.0
Oeu023128.1 Olea europaea HOM05D000083 ORTHO05D003582 2.9e-58 231.1 208 63.9
COL.COLO4_08996 Corchorus olitorius HOM05D000083 ORTHO05D003582 3.2e-57 227.6 126 89.7
Cpa.g.sc119.47 Carica papaya HOM05D000083 ORTHO05D003582 5.5e-57 226.9 126 90.5
Oeu007541.1 Olea europaea HOM05D000083 ORTHO05D003582 1.9e-54 218.4 216 59.7
Oeu023129.1 Olea europaea HOM05D000083 ORTHO05D003582 8.2e-53 213.0 188 64.4
unitig_22.g5628 Utricularia gibba HOM05D000083 ORTHO05D003582 4.8e-45 187.2 117 80.3
C05p54340 Brassica napus HOM05D000083 ORTHO05D003582 7.2e-41 173.3 136 71.3
BolC5t34102H Brassica oleracea HOM05D000083 ORTHO05D003582 7.2e-41 173.3 136 71.3
Actinidia04074 Actinidia chinensis HOM05D000083 ORTHO05D003582 1.8e-39 168.7 116 75.9
Cfa022394 Carpinus fangiana HOM05D000083 ORTHO05D003582 2.0e-38 165.2 774 23.1
HPP92_002069 Vanilla planifolia HOM05D000083 ORTHO05D003582 6.3e-37 160.2 180 55.0
AagrBONN_evm.TU.Sc2ySwM_344.4764 Anthoceros agrestis HOM05D000083 ORTHO05D003582 1.1e-36 159.5 119 65.5
HPP92_002070 Vanilla planifolia HOM05D000083 ORTHO05D003582 1.5e-35 155.6 126 68.3
HPP92_002089 Vanilla planifolia HOM05D000083 ORTHO05D003582 1.0e-34 152.9 101 72.3
Oeu042808.3 Olea europaea HOM05D000083 ORTHO05D290297 1.0e-31 142.9 166 57.8
Zm00001eb339770 Zea mays HOM05D000083 ORTHO05D003582 5.2e-31 140.6 165 49.1
SHI17995 Sapria himalayana HOM05D000083 ORTHO05D003582 1.0e-26 126.3 94 60.6
Zm00001eb134900 Zea mays HOM05D000083 ORTHO05D003582 3.0e-15 88.2 67 65.7
Cre01.g016570 Chlamydomonas reinhardtii HOM05D000083 ORTHO05D003582 8.8e-15 86.7 169 31.4
Actinidia04075 Actinidia chinensis HOM05D000083 ORTHO05D003582 2.2e-13 82.0 47 91.5
MCO05G550 Micromonas commoda HOM05D000083 ORTHO05D003582 4.8e-13 80.9 303 27.4
Oeu043479.1 Olea europaea HOM05D001851 ORTHO05D002237 7.0e-12 77.0 68 60.3
Psat2g036920 Pisum sativum HOM05D000083 ORTHO05D003582 5.2e-07 60.8 65 60.0


User provided reference genes

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